View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14849_low_14 (Length: 319)

Name: NF14849_low_14
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14849_low_14
NF14849_low_14
[»] chr5 (1 HSPs)
chr5 (19-308)||(29662025-29662315)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 29662025 - 29662315
Alignment:
Q  19 tctactattattcttctcttcaaccttcttgagaataggatcagtttcatagaactgatcttcttttgttaaaccaccaacaatccaatcccaaaaacct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29662025 tctactattattcttctcttcaaccttcttgagaataggatcagtttcatagaactgatcttcttttgttaaaccaccaacaatccaatcccaaaaacct 29662124  T
Q  119 ttctcttgcttgctactgccaccacctgtagtaccctttgcacctgtagctgcaaagactcttcctgttgttggaaccattggcaacatggtgatagaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29662125 ttctcttgcttgctactgccaccacctgtagtaccctttgcacctgtagctgcaaagactcttcccgttgttggaaccattggcaacatggtgatagaag 29662224  T
Q  219 ccattaattctcctagcttaatttgaaaaattatatcaactag-aaactaaaatataatataaattctctttgcctagtgttattgatgat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29662225 ccattaattctcctagcttaatttgaaaaattatatcaactagaaaactaaaatataatataaattctctttgcctagtgttattgatgat 29662315  T

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