View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_low_15 (Length: 301)
Name: NF14849_low_15
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 134 - 290
Target Start/End: Complemental strand, 23033923 - 23033767
Alignment:
| Q |
134 |
tttgtcattaagagttaattagatatataaggaaattacccaatgcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttat |
233 |
Q |
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| T |
23033923 |
tttgtcattaagagttaattagatatataaggaaattacccaatgcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttat |
23033824 |
T |
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| Q |
234 |
ccttgaagctgcttaactttgtttcacccatttttctaccttatgaaggtctttgat |
290 |
Q |
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| T |
23033823 |
ccttgaagctgcttaactttgtttcacccatttttctaccttatgaaggtctttgat |
23033767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 23025859 - 23025750
Alignment:
| Q |
160 |
ataaggaaattacccaatgcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttatccttgaagctgcttaactttgtttca |
259 |
Q |
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| T |
23025859 |
ataagaaaattacccaatgcctcgggttccacctgtcactaacgcagtcataccatgtagtgaccatcttttatccttgaagctgcttaactttgtttca |
23025760 |
T |
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| Q |
260 |
cccatttttc |
269 |
Q |
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| T |
23025759 |
cccatgtttc |
23025750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 23080262 - 23080175
Alignment:
| Q |
171 |
acccaatgcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttatccttgaagctgcttaactttgtttc |
258 |
Q |
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| T |
23080262 |
accctatgcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatctttgaagctgcttaactttgtttc |
23080175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 23091162 - 23091082
Alignment:
| Q |
178 |
gcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttatccttgaagctgcttaactttgtttc |
258 |
Q |
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|||||| |||||||| || |||| || ||||| || || ||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
23091162 |
gcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatctttgaagctgcttaactttgtttc |
23091082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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