View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_low_16 (Length: 287)
Name: NF14849_low_16
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 10870776 - 10871022
Alignment:
| Q |
17 |
ttatactgaaggtatgtgaatgatttcctcaatttgctcaaattgtgctccttgatgcttcattacttactatttgcatgttgttttggtaggaaaaata |
116 |
Q |
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| T |
10870776 |
ttatactgaaggtatgtgaatgatttcctcaatttgctcaaattgtgctccttgatgcttcattacttactatttgcgtgttgttttggtaggaaaaata |
10870875 |
T |
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| Q |
117 |
ctcgacaaaagcaatggcgatgtagcagttgatcattatcatcgttataaggtcagtgatatctttcttttgcctaaatatcgtgtatgccaattgtcta |
216 |
Q |
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| T |
10870876 |
ctcgacaaaagcaatggcgatgtagcagttgatcattatcatcgttacaaggtcagtgatatctttctttttcctaaatattgtgtatgtcaattgtcta |
10870975 |
T |
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| Q |
217 |
gtattagtcttttgcttagatattatcatcatatatggcgtcgttta |
263 |
Q |
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| T |
10870976 |
gcattagtcttttgcttagatattatcattgtatatgatgtcgttta |
10871022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 10858294 - 10858377
Alignment:
| Q |
100 |
ttttggtaggaaaaatactcgacaaaagcaatggcgatgtagcagttgatcattatcatcgttataaggtcagtgatatctttc |
183 |
Q |
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| T |
10858294 |
tttttgtaggaaaaatacttgacaaaagcaatggtgatgtagcagttgatcactatcatcggtatttggtcagtaatatctttc |
10858377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 25040530 - 25040486
Alignment:
| Q |
125 |
aagcaatggcgatgtagcagttgatcattatcatcgttataaggt |
169 |
Q |
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| T |
25040530 |
aagcaatggagatgtagctgttgatcagtatcatcgttataaggt |
25040486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 25019697 - 25019653
Alignment:
| Q |
125 |
aagcaatggcgatgtagcagttgatcattatcatcgttataaggt |
169 |
Q |
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| T |
25019697 |
aagcaatggagatgtagctgttgatcagtaccatcgttataaggt |
25019653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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