View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_low_18 (Length: 244)
Name: NF14849_low_18
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_low_18 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10648036 - 10648276
Alignment:
| Q |
1 |
tagtcaaggttgctcaacttttgaaattgacatcgagggatcaacacaagtcactcaggagttccacaacaggcatatagattttgtgaatcacccaaaa |
100 |
Q |
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| T |
10648036 |
tagtcaaggttgctcaactttcaaaattgacatcgagggatcaacacaagtcactcaggagttccacaacaggcatatagattttgtgaatcacccacaa |
10648135 |
T |
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| Q |
101 |
ggcctcgtaattggcctccactgtcccaattcatatatattatcccccgcctaatcattctccaatatatgatgcatgttacacacaataaatatgatca |
200 |
Q |
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| T |
10648136 |
ggcctcgtaattggcctccactgtcccaattcatatatattatcccccgccgaatcattctccaatatatgatgcatgttacacacaataaatatgatca |
10648235 |
T |
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| Q |
201 |
aacgattcacccttactcctcaacacctaagtgagaattat |
241 |
Q |
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| T |
10648236 |
aacgactcacccttactcctcaatacctaagtgagtattat |
10648276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 8442 - 8324
Alignment:
| Q |
29 |
gacatcgagggatcaacacaagtcactcaggagttccacaacaggcatatagattttgtgaatcacccaaaaggcctcgtaattggcctccactgtccca |
128 |
Q |
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| T |
8442 |
gacatcgtgggatcaacacgagtcacataggagttccacaccagacatataga-ttcgtaaatcaccctcaaggcccagtaattggcctccaccatccca |
8344 |
T |
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| Q |
129 |
attcatatatattatccccc |
148 |
Q |
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| T |
8343 |
attcatatttactatccccc |
8324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 10301272 - 10301393
Alignment:
| Q |
29 |
gacatcgagggatcaacacaagtcactcaggagttccacaacaggcatatagattttgtgaatcacccaaaaggcctcgtaattggcctccactgtccca |
128 |
Q |
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| T |
10301272 |
gacatcgtgggatcagcacgagtcacctaggagtttcagaccagacatatagattt-gtagatcacctaa--ggccccgtaattggcctccaccatccca |
10301368 |
T |
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| Q |
129 |
attcatatatattatc-ccccgcct |
152 |
Q |
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| T |
10301369 |
attcatatctactatctccccgcct |
10301393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 12178802 - 12178710
Alignment:
| Q |
89 |
aatcacccaaaaggcctcg-taattggcctccactgtcccaattcatatatattatcc-cccgcctaatcattctccaatatatgatgcatgt |
179 |
Q |
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|||||||| ||||||||| || || |||||||| |||||||||||||||| ||||| |||||||||||| | || | ||||||||||||| |
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| T |
12178802 |
aatcaccctcaaggcctcggtatttagcctccaccttcccaattcatatatactatccacccgcctaatcactgtctataatatgatgcatgt |
12178710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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