View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14849_low_2 (Length: 496)

Name: NF14849_low_2
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14849_low_2
NF14849_low_2
[»] chr4 (17 HSPs)
chr4 (28-494)||(4915147-4915636)
chr4 (33-102)||(13104271-13104340)
chr4 (29-102)||(12138962-12139035)
chr4 (29-97)||(56271469-56271537)
chr4 (31-97)||(42815515-42815582)
chr4 (20-102)||(2999212-2999294)
chr4 (29-102)||(12799823-12799896)
chr4 (33-102)||(32696294-32696363)
chr4 (29-95)||(33860755-33860822)
chr4 (31-95)||(3078803-3078868)
chr4 (29-102)||(17683450-17683523)
chr4 (29-102)||(22819758-22819831)
chr4 (35-102)||(1815890-1815957)
chr4 (33-102)||(54669473-54669542)
chr4 (29-102)||(45143562-45143635)
chr4 (29-102)||(45152331-45152404)
chr4 (65-97)||(52895402-52895434)
[»] chr1 (25 HSPs)
chr1 (29-97)||(41507088-41507156)
chr1 (29-102)||(33358047-33358120)
chr1 (29-102)||(29154887-29154960)
chr1 (37-97)||(7101581-7101641)
chr1 (29-108)||(10889929-10890008)
chr1 (31-97)||(46281547-46281614)
chr1 (30-97)||(52714795-52714862)
chr1 (29-98)||(51436663-51436733)
chr1 (29-102)||(6143792-6143865)
chr1 (29-102)||(36577301-36577374)
chr1 (29-102)||(40316833-40316906)
chr1 (29-102)||(50328030-50328103)
chr1 (29-102)||(50824850-50824923)
chr1 (29-102)||(52362591-52362664)
chr1 (37-92)||(45417889-45417944)
chr1 (24-102)||(50433873-50433952)
chr1 (24-62)||(4509398-4509436)
chr1 (34-108)||(8200189-8200263)
chr1 (29-102)||(13489771-13489844)
chr1 (29-102)||(15704951-15705024)
chr1 (37-102)||(50881999-50882064)
chr1 (33-97)||(5486009-5486073)
chr1 (43-102)||(16856569-16856629)
chr1 (65-97)||(23621375-23621407)
chr1 (65-97)||(23738154-23738186)
[»] chr7 (18 HSPs)
chr7 (29-102)||(41458705-41458778)
chr7 (29-97)||(3062439-3062507)
chr7 (35-102)||(7817751-7817818)
chr7 (24-102)||(10055521-10055599)
chr7 (29-102)||(41894024-41894097)
chr7 (32-97)||(42555676-42555741)
chr7 (24-81)||(44304027-44304084)
chr7 (31-93)||(46829590-46829653)
chr7 (35-97)||(3343224-3343286)
chr7 (37-102)||(4713690-4713756)
chr7 (24-62)||(31844534-31844572)
chr7 (29-102)||(34757359-34757433)
chr7 (37-102)||(11352863-11352928)
chr7 (29-102)||(28036853-28036926)
chr7 (29-97)||(33775048-33775117)
chr7 (48-97)||(49069372-49069421)
chr7 (33-113)||(23048278-23048358)
chr7 (37-97)||(25067340-25067400)
[»] chr5 (21 HSPs)
chr5 (29-102)||(41175595-41175668)
chr5 (29-97)||(15952939-15953007)
chr5 (31-97)||(6940043-6940110)
chr5 (31-97)||(18695429-18695496)
chr5 (29-102)||(10649544-10649617)
chr5 (29-102)||(34270436-34270509)
chr5 (31-97)||(9939325-9939392)
chr5 (29-100)||(30004682-30004753)
chr5 (29-102)||(8675322-8675395)
chr5 (29-102)||(34124730-34124803)
chr5 (29-102)||(43213948-43214021)
chr5 (37-102)||(43441855-43441920)
chr5 (33-97)||(6517834-6517898)
chr5 (29-97)||(38704091-38704159)
chr5 (20-103)||(3640085-3640168)
chr5 (33-97)||(2224904-2224968)
chr5 (29-97)||(9226409-9226478)
chr5 (29-102)||(19481071-19481144)
chr5 (29-81)||(9581688-9581739)
chr5 (66-102)||(10658993-10659029)
chr5 (33-97)||(15008444-15008508)
[»] chr3 (19 HSPs)
chr3 (29-102)||(3281605-3281678)
chr3 (29-102)||(24095295-24095368)
chr3 (31-98)||(29573248-29573316)
chr3 (30-102)||(34057842-34057914)
chr3 (29-97)||(55282584-55282652)
chr3 (34-102)||(33795613-33795682)
chr3 (29-102)||(49761416-49761489)
chr3 (29-102)||(51465803-51465876)
chr3 (31-97)||(27718679-27718746)
chr3 (24-102)||(37927093-37927172)
chr3 (44-102)||(6999294-6999352)
chr3 (29-102)||(9158761-9158835)
chr3 (65-102)||(23183558-23183595)
chr3 (30-95)||(24645466-24645531)
chr3 (29-102)||(37410984-37411057)
chr3 (31-97)||(45754749-45754817)
chr3 (37-102)||(55400116-55400181)
chr3 (34-97)||(28430843-28430907)
chr3 (37-97)||(39697116-39697176)
[»] chr2 (19 HSPs)
chr2 (29-102)||(29712087-29712159)
chr2 (29-97)||(5054717-5054785)
chr2 (29-102)||(23352796-23352869)
chr2 (33-97)||(44254714-44254778)
chr2 (31-97)||(34134664-34134731)
chr2 (35-97)||(14233612-14233674)
chr2 (29-102)||(3012741-3012814)
chr2 (29-102)||(15269970-15270043)
chr2 (32-97)||(22525890-22525955)
chr2 (29-102)||(37105747-37105820)
chr2 (35-102)||(42866865-42866932)
chr2 (65-107)||(22620543-22620585)
chr2 (29-102)||(13765509-13765582)
chr2 (29-102)||(24562906-24562979)
chr2 (24-97)||(34431723-34431796)
chr2 (37-102)||(36643973-36644038)
chr2 (29-102)||(39213659-39213732)
chr2 (29-102)||(40936953-40937026)
chr2 (34-97)||(5032037-5032101)
[»] chr8 (16 HSPs)
chr8 (31-97)||(10644695-10644762)
chr8 (24-97)||(36568065-36568138)
chr8 (29-102)||(36885377-36885450)
chr8 (33-97)||(4658148-4658212)
chr8 (33-102)||(7586052-7586121)
chr8 (24-81)||(20174788-20174845)
chr8 (24-81)||(20219515-20219572)
chr8 (37-102)||(30439395-30439460)
chr8 (24-102)||(28646776-28646855)
chr8 (24-102)||(28651360-28651439)
chr8 (37-100)||(43397690-43397753)
chr8 (29-102)||(9208173-9208247)
chr8 (34-102)||(22706129-22706198)
chr8 (29-102)||(31597057-31597130)
chr8 (35-102)||(1871504-1871571)
chr8 (29-97)||(14707237-14707305)
[»] chr6 (15 HSPs)
chr6 (24-102)||(868841-868919)
chr6 (29-102)||(32459405-32459478)
chr6 (42-102)||(3832585-3832645)
chr6 (37-97)||(31749482-31749542)
chr6 (20-75)||(15318104-15318159)
chr6 (37-95)||(26832763-26832821)
chr6 (29-102)||(18141190-18141263)
chr6 (20-100)||(15368715-15368794)
chr6 (35-102)||(13143271-13143338)
chr6 (29-102)||(2688953-2689027)
chr6 (35-97)||(32046813-32046875)
chr6 (29-102)||(6531069-6531142)
chr6 (29-102)||(35213450-35213523)
chr6 (29-97)||(1369469-1369537)
chr6 (33-97)||(22341069-22341133)
[»] scaffold0532 (1 HSPs)
scaffold0532 (29-102)||(11073-11146)
[»] scaffold0136 (1 HSPs)
scaffold0136 (29-102)||(38534-38607)
[»] scaffold0141 (1 HSPs)
scaffold0141 (29-102)||(12041-12114)


Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 28 - 494
Target Start/End: Complemental strand, 4915636 - 4915147
Alignment:
Q  28 gatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcctaaaaatttaattaaagaaatggggt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4915636 gatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcctaaaaatttaattaaagaagtggggt 4915537  T
Q  128 caaatgacccctatgagcag---------------------gtgatggagagagatatagagag--gagaatgaagggtgttgaatggatgtgttgattt 204  Q
    ||||||||||||| ||||||                     |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||    
T  4915536 caaatgacccctacgagcagatccgtgtctatgatgagtaggtgatggagagagatatagagagaggtgaatgaagggtgttgaatggatgtgttgattt 4915437  T
Q  205 ttgtaagggtgttcaaaaataggcacttaagaaacattagcgagggatatgttttctcttggcaactcattcatggtaggcttccaaatcgttctaattt 304  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4915436 ttgtaagggtgttcaaaaataggcacttaacaaacattagcgagggatatgttttctcttggcaactcattcatggtaggcttccaactcgttctaattt 4915337  T
Q  305 atttagaagggtcatcttggtggatggtgttagctctaattgtgtgtggtgttcggcgttttaaaagtggaggattatttgttttgtagatgttgtttgg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4915336 atttagaagggtcatcttggtggatggtgttagctctaattgtgtgtggtgttcggcgttttaaaagtggatgattatttgttttgtagatgttgtttgg 4915237  T
Q  405 ttggtagagtttggtattcgattttaggtggattaagacgggagtgattcccggaagtgttgtatccctctttaaccatttcactacttc 494  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915236 ttgatagagtttggtattcgattttaggtggattaagacgggagtgattcccggaagtgttgtatccctctttaaccatttcactacttc 4915147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 13104340 - 13104271
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||| |||||||    
T  13104340 ctactttttctttgtaaattatggttgtcatgtaagttgtcaatcaaatggttgttcaaatatcattcct 13104271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 12138962 - 12139035
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| ||||||||||||| ||||| |  |||||| |||||||||||||| ||||||||||||||||    
T  12138962 atacctactttttctttgtaaattatggttgttacataagttatcaatcaaatggttgttcaaataacattcct 12139035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 56271469 - 56271537
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||| ||||||||||||| ||||||||  |||||||||| ||||||| | |||||||||||    
T  56271469 atacctactttttctttgtaaattatggttgtcataaaagttgtcaaacaaatggatgttcaaataaca 56271537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 42815515 - 42815582
Alignment:
Q  31 acctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||||||||||||| || |||||||  ||||||||| ||||||||||| |||||||||||    
T  42815515 acctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataaca 42815582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 2999212 - 2999294
Alignment:
Q  20 ttcatacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| || ||||| |||||| ||||||||||||| |||||| |  ||||||||||| |||||||| ||||||||||| ||||    
T  2999212 ttcatgcaaataccaactttttctttgtaaattatggttgtcctaaaagttgtcaattaaatggttgttcaaataacactcct 2999294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 12799823 - 12799896
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||||| |||| |||||||||||||  ||||||  |||||||| || ||||||||| ||||||||||||||||    
T  12799823 atacctattttttctttgtaaattatgattgtcacataagttgttaaccaaatggttgttcaaataacattcct 12799896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 32696294 - 32696363
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||| ||||||||||||| ||||||  |||||||||| | ||| ||||| ||||||||||||||||    
T  32696294 ctactttttctttgtaaattatggttgtcccttaagttgtccaccaattggttgttcaaataacattcct 32696363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 33860755 - 33860822
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataa 95  Q
    |||| ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||| |||||||||    
T  33860755 atacttactttttctttgtaaattatcgttgtcacgtaagttgtcaatcaaattggttgttcaaataa 33860822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 3078868 - 3078803
Alignment:
Q  31 acctacttttcctttgtaaa-ttatagttgtcatttaagttgtcaatcaaatggtttttcaaataa 95  Q
    |||||||||||||||||||| |||| |||||||  ||||||||| |||||||| || |||||||||    
T  3078868 acctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatgattgttcaaataa 3078803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 17683450 - 17683523
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||||||| ||||||||||| ||||    
T  17683450 ataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 17683523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 22819758 - 22819831
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||||||| ||||||||||| ||||    
T  22819758 ataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 22819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 1815957 - 1815890
Alignment:
Q  35 acttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||| ||||||||||||| | |||||  ||||||||||| || |||||| ||||||||||| ||||    
T  1815957 actttttctttgtaaattatggctgtcacataagttgtcaaccagatggttgttcaaataacactcct 1815890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 54669542 - 54669473
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaat-ggtttttcaaataacattcct 102  Q
    |||||||| ||||||||||||| |||||||  |||||||||| |||||| |||| ||||||||||| ||||    
T  54669542 ctactttttctttgtaaattatggttgtcaaataagttgtca-tcaaattggttgttcaaataacactcct 54669473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 45143635 - 45143562
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||| ||| ||||||||||| ||||    
T  45143635 ataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatagttgttcaaataacaatcct 45143562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 45152404 - 45152331
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||| ||| ||||||||||| ||||    
T  45152404 ataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatagttgttcaaataacaatcct 45152331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 52895402 - 52895434
Alignment:
Q  65 taagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||||||||||||||||| |||||||||||    
T  52895402 taagttgtcaatcaaatggttgttcaaataaca 52895434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 41507156 - 41507088
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||| |||||||||||    
T  41507156 atacctactttttctttgtaaattatagttgtcaaataagttgtcaaccaaatggttgttcaaataaca 41507088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 33358120 - 33358047
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| |||||||  ||||||||||| ||||||||| ||||||||||| ||||    
T  33358120 atacccactttttctttgtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcct 33358047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 29154887 - 29154960
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||| ||| ||||||||||||| ||||||   ||||||||||| ||||||||| ||||||||||| ||||    
T  29154887 atacctacgttttctttgtaaattatcgttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 29154960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 7101641 - 7101581
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||||||||||||||  |||||  | |||||||||||||||||||| |||||||||||    
T  7101641 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaatggttgttcaaataaca 7101581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 10890008 - 10889929
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcctaaaaat 108  Q
    ||||| |||||| ||||||||||||| |||||||   |||||||||| ||||| ||| ||||||||||| |||| |||||    
T  10890008 ataccaactttttctttgtaaattatggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcctcaaaat 10889929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 46281547 - 46281614
Alignment:
Q  31 acctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||||||||||||| || |||||||  || |||||| ||||||||||| |||||||||||    
T  46281547 acctacttttcctttgtaaatttatggttgtcaaatatgttgtctatcaaatggttgttcaaataaca 46281614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 52714862 - 52714795
Alignment:
Q  30 tacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||| |||||| ||||||||||||| ||||||    |||||||||||||||||||| |||||||||||    
T  52714862 taccaactttttctttgtaaattattgttgtcccaaaagttgtcaatcaaatggttgttcaaataaca 52714795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 51436733 - 51436663
Alignment:
Q  29 atacctacttttcctttgtaaat-tatagttgtcatttaagttgtcaatcaaatggtttttcaaataacat 98  Q
    |||||||||||| |||||||||| ||| |||||||| ||||||||||| |||||  || ||||||||||||    
T  51436733 atacctactttttctttgtaaatctatggttgtcatataagttgtcaaccaaattattgttcaaataacat 51436663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 6143792 - 6143865
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| ||||||||||||| |||||| |  | |||||||| |||||| || ||||||||||| ||||    
T  6143792 atacctactttttctttgtaaattatggttgtcttaaatgttgtcaaccaaatgattgttcaaataacaatcct 6143865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 36577374 - 36577301
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| |||| |||||||| |||||| |  |||||||||| ||||||||| ||||||||||| ||||    
T  36577374 ataccaactttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcct 36577301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 40316906 - 40316833
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| |||| |||||||| |||||| |  |||||||||| ||||||||| ||||||||||| ||||    
T  40316906 ataccaactttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcct 40316833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 50328103 - 50328030
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||||||| ||||||||||| ||||    
T  50328103 ataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 50328030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 50824850 - 50824923
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| ||||||||||||| |||||    ||||||||| | ||||||||| ||||||||||| ||||    
T  50824850 atacctactttttctttgtaaattatggttgtatcataagttgtccaccaaatggttgttcaaataacactcct 50824923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 52362591 - 52362664
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| |||| |||||||| |||||| |  |||||||||| ||||||||| ||||||||||| ||||    
T  52362591 ataccaactttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcct 52362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 45417889 - 45417944
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaa 92  Q
    |||| |||| |||||||| |||||||  ||||||||||||||||||||| ||||||    
T  45417889 tttttctttataaattatggttgtcacataagttgtcaatcaaatggttgttcaaa 45417944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 50433873 - 50433952
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||| |||||||||||| |||| |||||||| |||||||   ||||||||||||||| | ||| ||||||||||| ||||    
T  50433873 tacaaatacctactttttctttataaattatggttgtcacacaagttgtcaatcaaattcgttgttcaaataacactcct 50433952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 4509436 - 4509398
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtca 62  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  4509436 tacaaatacctactttttctttgtaaattatagttgtca 4509398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 8200189 - 8200263
Alignment:
Q  34 tacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcctaaaaat 108  Q
    ||||||| ||||||||||||| ||||||   ||||||||||| |||| || | ||||||||||| |||| |||||    
T  8200189 tactttttctttgtaaattatggttgtcccataagttgtcaaccaaaaggctgttcaaataacactcctcaaaat 8200263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 13489771 - 13489844
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||| ||| ||||||||||| ||||    
T  13489771 ataccaactttttctttgtaaattatggttgtcccagaagttgtcaaccaaatagttgttcaaataacactcct 13489844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 15705024 - 15704951
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| |||| |||||||| |||||| |  ||||| |||| ||||||||| ||||||||||| ||||    
T  15705024 ataccaactttttctttataaattatggttgtcctaaaagttatcaaccaaatggttgttcaaataacactcct 15704951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 50882064 - 50881999
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| |||| ||||||||  ||||||  ||| ||||||||||||||||| ||||||||||| ||||    
T  50882064 tttttctttataaattatgattgtcacataaattgtcaatcaaatggttgttcaaataacactcct 50881999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 5486009 - 5486073
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||| ||||||||||||| |||||  | |||||||||||  ||||| || |||||||||||    
T  5486009 ctactttttctttgtaaattatggttgttttataagttgtcaagtaaatgattgttcaaataaca 5486073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 16856569 - 16856629
Alignment:
Q  43 tttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||||||||||| |||||||  |||||||||||| ||| | ||| ||||||||||||||||    
T  16856569 tttgtaaattatggttgtcaaataagttgtcaattaaattagttgttcaaataacattcct 16856629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 23621407 - 23621375
Alignment:
Q  65 taagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||||||||||||||||| |||||||||||    
T  23621407 taagttgtcaatcaaatggttgttcaaataaca 23621375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 23738186 - 23738154
Alignment:
Q  65 taagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||||||||||||||||| |||||||||||    
T  23738186 taagttgtcaatcaaatggttgttcaaataaca 23738154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 41458705 - 41458778
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| |||| |||||||| |||||||| ||||||||||| ||||||||| ||||||||||| ||||    
T  41458705 atacctactttttctttataaattatggttgtcatgtaagttgtcaaccaaatggttgttcaaataacactcct 41458778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 3062439 - 3062507
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||| |||| ||||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||    
T  3062439 atacctattttttctttgtaaattatggttgtcatgtaagttgtcaaccaaatggttgttcaaataaca 3062507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 7817751 - 7817818
Alignment:
Q  35 acttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||| ||||||||||||| |||||||  ||||||||||| ||||||||| ||||||||||| ||||    
T  7817751 actttttctttgtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcct 7817818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 10055599 - 10055521
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| ||||| |||||| ||||||||||||||||||||   ||||||||||| ||||||||| || |||||||| ||||    
T  10055599 tacaaataccaactttttctttgtaaattatagttgtcccataagttgtcaaccaaatggttgtttaaataacactcct 10055521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 41894024 - 41894097
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||||||||||||||||| |||||||   || |||||||  |||||||| ||||||||||| ||||    
T  41894024 ataccaacttttcctttgtaaattatggttgtcacaaaaattgtcaactaaatggttgttcaaataacactcct 41894097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 42555676 - 42555741
Alignment:
Q  32 cctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||||| |||||||| ||||||    |||||||||| ||||||||| |||||||||||    
T  42555676 cctacttttcctttataaattatggttgtctcaaaagttgtcaaccaaatggttgttcaaataaca 42555741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 44304027 - 44304084
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaat 81  Q
    |||| |||| || |||| || ||||||||||||||||||| |||||||||||||||||    
T  44304027 tacaaatacttattttttctctgtaaattatagttgtcatataagttgtcaatcaaat 44304084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 46829590 - 46829653
Alignment:
Q  31 acctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaat 93  Q
    |||||||||| ||||||||||| || |||||||  ||||||||| ||||||||||| |||||||    
T  46829590 acctactttttctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaat 46829653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 3343286 - 3343224
Alignment:
Q  35 acttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||| |||| |||||||| |||||| |  |||||||||||||||| ||| |||||||||||    
T  3343286 actttttctttataaattatggttgtcttaaaagttgtcaatcaaatagttgttcaaataaca 3343224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 4713690 - 4713756
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||| ||||||||||||| |||||||  ||||||||||| |||| ||||| ||||||||||| ||||    
T  4713690 tttttctttgtaaattatggttgtcacataagttgtcaaccaaattggttattcaaataacactcct 4713756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 31844572 - 31844534
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtca 62  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  31844572 tacaaatacctactttttctttgtaaattatagttgtca 31844534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 34757433 - 34757359
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||||||||||| |||| |||||||| |||||||   |||||||||| |||| ||||| ||||||||||| ||||    
T  34757433 atacctactttttctttataaattatggttgtcacaaaagttgtcaaccaaattggttgttcaaataacactcct 34757359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 11352928 - 11352863
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| ||||||||||||| ||||||    |||||||||| ||||||||| ||||||||||| ||||    
T  11352928 tttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 11352863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 28036853 - 28036926
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||||||| ||||| ||||| ||||    
T  28036853 ataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaattaacactcct 28036926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 33775048 - 33775117
Alignment:
Q  29 atacctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||||||||| ||| |||||| || |||||||  |||||||||||||||| | || |||||||||||    
T  33775048 atacctacttttcttttataaattcatggttgtcaaataagttgtcaatcaaacgattgttcaaataaca 33775117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 49069372 - 49069421
Alignment:
Q  48 aaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||||||||||    |||||||||||||||||||| |||||||||||    
T  49069372 aaattatagttgtcccaaaagttgtcaatcaaatggttgttcaaataaca 49069421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 23048358 - 23048278
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcctaaaaatttaat 113  Q
    |||||||| ||||||||||||| ||||| |  ||||||||||   || ||||| ||||||||||| |||| ||||| ||||    
T  23048358 ctactttttctttgtaaattatggttgtaaaataagttgtcaccaaattggttgttcaaataacactcctcaaaatataat 23048278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 25067340 - 25067400
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||| ||||||||||||| ||| |||| ||| ||||||| ||||||||| || ||||||||    
T  25067340 tttttctttgtaaattatggttatcatataaattgtcaaccaaatggttgtttaaataaca 25067400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 41175668 - 41175595
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| |||||||  ||||||||||| ||||||||| ||||||||||| ||||    
T  41175668 atacccactttttctttgtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcct 41175595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 15953007 - 15952939
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||| |||||| ||||||||||||| |||||||  ||||||||||| ||||||||| |||||||||||    
T  15953007 atacccactttttctttgtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataaca 15952939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 6940110 - 6940043
Alignment:
Q  31 acctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||||||||||||| || |||||||  ||||||||| ||||||||||| |||||||||||    
T  6940110 acctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataaca 6940043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 18695429 - 18695496
Alignment:
Q  31 acctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||||||||||||| || |||||||  ||||||||| ||||||||||| |||||||||||    
T  18695429 acctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataaca 18695496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 10649544 - 10649617
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| |||||||   |||||||||| ||||||||| ||||||||||| ||||    
T  10649544 ataccaactttttctttgtaaattatggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcct 10649617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 34270436 - 34270509
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||||||||||||||||| ||||||    || ||||||| ||||||||| ||||||||||| ||||    
T  34270436 atacctacttttcctttgtaaattatggttgtctcaaaatttgtcaaccaaatggttgttcaaataacactcct 34270509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 9939392 - 9939325
Alignment:
Q  31 acctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||||||||||||| || |||||||  ||| ||||| ||||||||||| |||||||||||    
T  9939392 acctacttttcctttgtaaatttatggttgtcaaataaattgtctatcaaatggttgttcaaataaca 9939325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 30004753 - 30004682
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattc 100  Q
    |||||||||||| |||||||||||||||||||     |||||||||| |||| |||| ||||||||||||||    
T  30004753 atacctactttttctttgtaaattatagttgttccaaaagttgtcaaccaaacggttgttcaaataacattc 30004682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 8675395 - 8675322
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||||||| ||||||||||| ||||    
T  8675395 ataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 8675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 34124730 - 34124803
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| |||||| |  || |||||||| |||||||| ||||||||||| ||||    
T  34124730 ataccaactttttctttgtaaattatggttgtcttaaaaattgtcaattaaatggttgttcaaataacactcct 34124803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 43214021 - 43213948
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||||| |||| |||| ||||||||||||||  |  |||||||||| ||||||||| ||||||||||| ||||    
T  43214021 atacctattttttctttataaattatagttgttttaaaagttgtcaaccaaatggttgttcaaataacactcct 43213948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 43441855 - 43441920
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| ||||||||||||| |||||| |  |||||||||| ||||||||| ||||||||||| ||||    
T  43441855 tttttctttgtaaattatggttgtcttaaaagttgtcaaccaaatggttgttcaaataacactcct 43441920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 6517834 - 6517898
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||| ||||||||||||||||| || |  ||||| ||||| |||||||| |||||||||||    
T  6517834 ctactttttctttgtaaattatagttatcttaaaagttatcaattaaatggttgttcaaataaca 6517898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 38704159 - 38704091
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||| |||||| ||||||||||||| ||||||    ||||||| |||||||||||| |||||||||||    
T  38704159 ataccaactttttctttgtaaattatggttgtcccaaaagttgttaatcaaatggttgttcaaataaca 38704091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 3640168 - 3640085
Alignment:
Q  20 ttcatacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattccta 103  Q
    ||||| || ||||| |||||| |||| |||||||| |||||||  |||||||||||  |||||||  ||||||||||| |||||    
T  3640168 ttcatgcaaatacccactttttctttataaattatggttgtcacataagttgtcaactaaatggtagttcaaataacactccta 3640085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 2224904 - 2224968
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataaca 97  Q
    |||||||| ||||||||||||| |||||||  ||||||||| |||||| ||||| |||||||||||    
T  2224904 ctactttttctttgtaaattatggttgtcaaataagttgtc-atcaaattggttgttcaaataaca 2224968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 9226409 - 9226478
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataaca 97  Q
    |||| ||||||| |||||||||||||| ||||||   |||||||||| |||| ||||| |||||||||||    
T  9226409 atacttactttttctttgtaaattataattgtcacaaaagttgtcaaccaaattggttgttcaaataaca 9226478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 19481144 - 19481071
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||||||||||    ||||| |||| |||||| || ||||||||||| ||||    
T  19481144 ataccaactttttctttgtaaattatagttgtcccaaaagttatcaaccaaatgattgttcaaataacactcct 19481071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 9581688 - 9581739
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaat 81  Q
    |||||||||||| ||||||||||||| |||||||   ||||||||||||||||    
T  9581688 atacctactttttctttgtaaattatggttgtca-caaagttgtcaatcaaat 9581739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 10659029 - 10658993
Alignment:
Q  66 aagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  10659029 aagttgtcaatcaaatggttgttcaaataacactcct 10658993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 15008508 - 15008444
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||||| ||||||||||||  ||||||  ||||||||||| |||||  || |||||||||||    
T  15008508 ctacttttcttttgtaaattattattgtcacataagttgtcaaccaaataattgttcaaataaca 15008444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 3281678 - 3281605
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||||| |||| ||||||||||||| |||||||| ||||||| ||| ||||||||| ||||||||||| ||||    
T  3281678 atacctattttttctttgtaaattatggttgtcatgtaagttgacaaccaaatggttgttcaaataacactcct 3281605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 24095368 - 24095295
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| ||||||||||||| ||||||||  |||||||||| ||||||| | ||||||||||| ||||    
T  24095368 atacctactttttctttgtaaattatggttgtcataaaagttgtcaaccaaatggatgttcaaataacactcct 24095295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 29573316 - 29573248
Alignment:
Q  31 acctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataacat 98  Q
    |||||||||||||||||||||| || |||||||  ||| ||||| ||||||||||| ||||||||||||    
T  29573316 acctacttttcctttgtaaatttatggttgtcaaataaattgtctatcaaatggttgttcaaataacat 29573248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 34057914 - 34057842
Alignment:
Q  30 tacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| |||||| |||| ||||||||||||||| |  |||||||||||||||||||| |||||| |||| ||||    
T  34057914 taccaactttttctttataaattatagttgtcctaaaagttgtcaatcaaatggttgttcaaacaacactcct 34057842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 55282652 - 55282584
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||| |||||| |||||||||||| |||||||   ||||||||||| ||||||||| |||||||||||    
T  55282652 ataccaactttttctttgtaaattacagttgtctcataagttgtcaaccaaatggttattcaaataaca 55282584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 33795682 - 33795613
Alignment:
Q  34 tacttttcctttgtaaattatagttgtcatttaagttgtcaa-tcaaatggtttttcaaataacattcct 102  Q
    ||||||| ||||||||||||| |||||||  ||||||||||| | || ||||| ||||||||||||||||    
T  33795682 tactttttctttgtaaattatggttgtcacgtaagttgtcaactaaattggttgttcaaataacattcct 33795613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 49761416 - 49761489
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| |||| ||||||||  ||||||| |||||||||||  ||||| || ||||||||||| ||||    
T  49761416 atacctactttttctttataaattatgattgtcatgtaagttgtcaactaaatgattgttcaaataacactcct 49761489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 51465876 - 51465803
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||||||| ||||||||||| ||||    
T  51465876 ataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 51465803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 27718746 - 27718679
Alignment:
Q  31 acctacttttcctttgtaaa-ttatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||||||||||| |||| |||||||  || |||| | ||||||||||| |||||||||||    
T  27718746 acctacttttcctttgtaaatttatggttgtcaaatatgttggctatcaaatggttgttcaaataaca 27718679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 37927172 - 37927093
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||| ||||||| |||| |||| |||||||| |||||||   ||||||||||||||| ||||| ||||||||||| ||||    
T  37927172 tacaaatacctattttttctttataaattatggttgtcacacaagttgtcaatcaaattggttgttcaaataacactcct 37927093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 6999294 - 6999352
Alignment:
Q  44 ttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||||||||| ||||||   ||||||||||| ||||||||| ||||||||||| ||||    
T  6999294 ttgtaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 6999352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 9158835 - 9158761
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||| ||||||| ||||||||||||| |||||||  ||||||||||| |||| | ||| ||||||||||| ||||    
T  9158835 atacttactttttctttgtaaattatggttgtcacataagttgtcaaccaaattagttgttcaaataacactcct 9158761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 23183558 - 23183595
Alignment:
Q  65 taagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  23183558 taagttgtcaatcaaatggttgttcaaataacactcct 23183595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 24645466 - 24645531
Alignment:
Q  30 tacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataa 95  Q
    |||||| |||| ||||||||||||| ||||||||  |||||||||| ||| ||| | |||||||||    
T  24645466 tacctattttttctttgtaaattatggttgtcataaaagttgtcaaccaagtggatgttcaaataa 24645531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 37410984 - 37411057
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| ||||||||||||| |||||    || ||||||||  |||||||| ||||||||||| ||||    
T  37410984 atacctacttttactttgtaaattatggttgtttcataggttgtcaactaaatggttgttcaaataacactcct 37411057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 45754749 - 45754817
Alignment:
Q  31 acctacttttcctttgtaaattata--gttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||| ||||||||||| ||  ||||||   |||||| |||||||||||||| |||||||||||    
T  45754749 acctactttttctttgtaaattttatggttgtctaataagttatcaatcaaatggttgttcaaataaca 45754817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 55400116 - 55400181
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| |||| |||||||| |||||| |  |||||||||| ||||||||| ||||||||||| ||||    
T  55400116 tttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcct 55400181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 28430843 - 28430907
Alignment:
Q  34 tacttttcctttgtaaattatagttgtcatttaagttgtcaatcaa-atggtttttcaaataaca 97  Q
    ||||||||||||||||||||| ||||| |  |||||||| ||||||  ||||| |||||||||||    
T  28430843 tacttttcctttgtaaattatggttgtgacataagttgtaaatcaatttggttattcaaataaca 28430907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 39697176 - 39697116
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||| ||||||||||||| ||||||    |||||||||||||||| ||| |||||||||||    
T  39697176 tttttctttgtaaattatggttgtcccaaaagttgtcaatcaaatagttgttcaaataaca 39697116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 29712087 - 29712159
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| ||||||||||||| |||||||| |||||| |||| ||||||||| ||||||||||| ||||    
T  29712087 atacctactttttctttgtaaattatggttgtcatgtaagtt-tcaaccaaatggttgttcaaataacagtcct 29712159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 5054717 - 5054785
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||| ||||||||||||| |||||||  ||||||||||| ||||| ||| |||||||||||    
T  5054717 atacctactttttctttgtaaattattgttgtcacataagttgtcaaccaaatagttattcaaataaca 5054785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 23352869 - 23352796
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| ||||||| ||||||||||||| ||||||   ||||||||||| ||||||||| ||||||||||| ||||    
T  23352869 atacatactttttctttgtaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 23352796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 44254714 - 44254778
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||| ||||||||||||| ||| ||   ||||||||||||||||||||| |||||||||||    
T  44254714 ctactttttctttgtaaattatggttatcccataagttgtcaatcaaatggttgttcaaataaca 44254778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 34134731 - 34134664
Alignment:
Q  31 acctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||| |||||||||||||| || |||||||  ||||||||| ||||||||||| |||||||||||    
T  34134731 acctactcttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataaca 34134664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 14233674 - 14233612
Alignment:
Q  35 acttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||| ||||||||||||| |||||| | |||||||||||  |||||||| |||||||||||    
T  14233674 actttttctttgtaaattatggttgtcttgtaagttgtcaacaaaatggttgttcaaataaca 14233612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 3012814 - 3012741
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| ||||  ||||||| ||||||   ||||||||||| ||||||||| ||||||||||| ||||    
T  3012814 atacctactttttctttaaaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 3012741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 15269970 - 15270043
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| ||||||||||||| ||| ||||  ||||| |||| ||||||| | ||||||||||| ||||    
T  15269970 atacctactttttctttgtaaattatggttatcataaaagttatcaaccaaatggatgttcaaataacactcct 15270043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 22525955 - 22525890
Alignment:
Q  32 cctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||||| ||||||||||||| ||||||    ||||| |||||||||||||| |||||||||||    
T  22525955 cctactttttctttgtaaattatggttgtctcaaaagttatcaatcaaatggttgttcaaataaca 22525890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 37105747 - 37105820
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| |||||||   |||||||||| ||||| ||| ||||||||||| ||||    
T  37105747 ataccaactttttctttgtaaattatggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcct 37105820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 42866865 - 42866932
Alignment:
Q  35 acttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||| |||||||||||||  ||||||  ||||||||| ||||||||||| || |||||||| ||||    
T  42866865 actttttctttgtaaattatgattgtcacgtaagttgtcgatcaaatggttgttaaaataacactcct 42866932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 22620543 - 22620585
Alignment:
Q  65 taagttgtcaatcaaatggtttttcaaataacattcctaaaaa 107  Q
    ||||||||||||||||| ||| || ||||||||||||||||||    
T  22620543 taagttgtcaatcaaatagttatttaaataacattcctaaaaa 22620585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 13765509 - 13765582
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| ||||||  |||||||||||| ||||||    |||||||||| ||||||||| ||||||||||| ||||    
T  13765509 ataccaactttttatttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 13765582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 24562979 - 24562906
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| || ||| |||| |||||||| |||||| |  |||||||||| ||||||||| ||||||||||| ||||    
T  24562979 ataccaaccttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcct 24562906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 34431796 - 34431723
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||| ||| |||||||| |||||||| |||| |||||||  |||||| |||| |||||| || |||||||||||    
T  34431796 tacacatatctactttttctttgtaagttatggttgtcacgtaagttatcaaccaaatgattgttcaaataaca 34431723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 36644038 - 36643973
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| ||||||||||||| ||||||   ||| ||||||| ||||||||| ||||||||||| ||||    
T  36644038 tttttctttgtaaattatggttgtcccataaattgtcaaccaaatggttgttcaaataacactcct 36643973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 39213732 - 39213659
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| |||||||||| || ||||||    |||||||||||||||||||| || |||||||| ||||    
T  39213732 ataccaactttttctttgtaaatgatggttgtcccaaaagttgtcaatcaaatggttgtttaaataacactcct 39213659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 40937026 - 40936953
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| |||||||  ||| ||||||   |||||||| ||||||||||| ||||    
T  40937026 atacccactttttctttgtaaattatggttgtcacataaattgtcagctaaatggttattcaaataacactcct 40936953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 5032037 - 5032101
Alignment:
Q  34 tacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||||| ||||||||||| || |||||||  ||||||||| |||||| |||| |||||||||||    
T  5032037 tactttttctttgtaaatttatggttgtcaaataagttgtctatcaaaaggttgttcaaataaca 5032101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 10644762 - 10644695
Alignment:
Q  31 acctacttttcctttgtaaatt-atagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||||||||||||| || |||||||  ||||||||| ||||||||||| |||||||||||    
T  10644762 acctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataaca 10644695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 36568065 - 36568138
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||| ||||||||||||  | |||||||||| ||||||   ||||||||||||||||||||| |||||||||||    
T  36568065 tacaaatacctactttttttgtgtaaattatggttgtcccataagttgtcaatcaaatggttgttcaaataaca 36568138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 36885450 - 36885377
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||||||| ||||||||||||| ||||||   ||||||||| | ||||||||| ||||||||||| ||||    
T  36885450 atacctactttttctttgtaaattatggttgtcccataagttgtccaccaaatggttgttcaaataacactcct 36885377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 4658212 - 4658148
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||| ||||||||||||| |||||| |  ||||||||||| |||||||| |||||||||||    
T  4658212 ctactttttctttgtaaattatggttgtcctaaaagttgtcaattaaatggttgttcaaataaca 4658148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 7586121 - 7586052
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||||| |||||||||||||||||||||  ||||||||||   || ||||| ||||||||||| ||||    
T  7586121 ctactttttctttgtaaattatagttgtcaaataagttgtcatgaaattggttgttcaaataacactcct 7586052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 20174788 - 20174845
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaat 81  Q
    |||| |||| || |||| || ||||||||||||||||||| |||||||||||||||||    
T  20174788 tacaaatacttattttttctctgtaaattatagttgtcatataagttgtcaatcaaat 20174845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 20219515 - 20219572
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaat 81  Q
    |||| |||| || |||| || ||||||||||||||||||| |||||||||||||||||    
T  20219515 tacaaatacttattttttctctgtaaattatagttgtcatataagttgtcaatcaaat 20219572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 30439460 - 30439395
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| ||||||||||||| |||||||  |||||| |||| ||||||||| ||||||||||| ||||    
T  30439460 tttttctttgtaaattatggttgtcacataagttatcaaccaaatggttgttcaaataacactcct 30439395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 28646776 - 28646855
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||| ||| |||||||| |||| |||||||| ||| |||  |||||||||||||||| ||||| ||||||||||| ||||    
T  28646776 tacaaatatctactttttctttataaattatggttatcacataagttgtcaatcaaattggttgttcaaataacactcct 28646855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 28651360 - 28651439
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||| ||| |||||||| |||| |||||||| ||| |||  |||||||||||||||| ||||| ||||||||||| ||||    
T  28651360 tacaaatatctactttttctttataaattatggttatcacataagttgtcaatcaaattggttgttcaaataacactcct 28651439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 43397690 - 43397753
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattc 100  Q
    ||||||||||||||||||  |||||  | |||||||||| ||||| ||| ||||||||||||||    
T  43397690 ttttcctttgtaaattatgattgtctctaaagttgtcaaccaaatagttgttcaaataacattc 43397753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 9208173 - 9208247
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||||||||||| |||| || |||||||||||||   |||||||||| |||| ||||| ||||||||||| ||||    
T  9208173 atacctactttttctttatatattatagttgtcacaaaagttgtcaaccaaattggttgttcaaataacactcct 9208247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 22706198 - 22706129
Alignment:
Q  34 tacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    ||||||| |||||||||| || |||||||  |||||||||||||||| ||||| || |||||||| ||||    
T  22706198 tactttttctttgtaaatgatggttgtcaagtaagttgtcaatcaaattggttgttaaaataacactcct 22706129  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 31597057 - 31597130
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| |||||||||||||  |||||    ||||| |||||||||||||| ||||||||||| ||||    
T  31597057 ataccaactttttctttgtaaattatgattgtctcaaaagttatcaatcaaatggttgttcaaataacactcct 31597130  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 1871571 - 1871504
Alignment:
Q  35 acttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||||| ||||||||||||| |||||||  |||||||| ||||||| ||||| ||||||||||| ||||    
T  1871571 actttttctttgtaaattatggttgtcaaataagttgt-aatcaaattggttgttcaaataacactcct 1871504  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 14707305 - 14707237
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||||||| |||||||||||||  |||||   ||||||||| | ||||| ||| |||||||||||    
T  14707305 atacctactttttctttgtaaattatgattgtctcataagttgtccaccaaatagttgttcaaataaca 14707237  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 868919 - 868841
Alignment:
Q  24 tacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| |||| ||||||| ||||||||||||| ||| |||| |||| |||||| ||||||||| ||||||||||| ||||    
T  868919 tacaaatacttactttttctttgtaaattatggttatcatgtaaggtgtcaaccaaatggttgttcaaataacactcct 868841  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 32459478 - 32459405
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| |||||| |  |||||||||||||||| ||| ||||||||||| ||||    
T  32459478 ataccaactttttctttgtaaattatggttgtcctaaaagttgtcaatcaaattgttgttcaaataacactcct 32459405  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 3832585 - 3832645
Alignment:
Q  42 ctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||||||||||| ||||||   ||||||||||||||||||||| ||||||||||| ||||    
T  3832585 ctttgtaaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcct 3832645  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 31749482 - 31749542
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||| ||||||||||||| ||||||  ||||||||||||||||||| || |||||||||||    
T  31749482 tttttctttgtaaattatggttgtctcttaagttgtcaatcaaatgattgttcaaataaca 31749542  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 15318159 - 15318104
Alignment:
Q  20 ttcatacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaa 75  Q
    ||||| || ||||||| |||||||||||||||||| |||||||||||| |||||||    
T  15318159 ttcatgcatatacctatttttcctttgtaaattatggttgtcatttaaattgtcaa 15318104  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 26832763 - 26832821
Alignment:
Q  37 ttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataa 95  Q
    |||| ||| ||||||||| |||||||  ||||||||||||||||||||| |||||||||    
T  26832763 tttttcttcgtaaattatggttgtcacataagttgtcaatcaaatggttgttcaaataa 26832821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 18141263 - 18141190
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||| | ||||||||||||| |||||||   |||||||||| ||||||||| ||||||||||| ||||    
T  18141263 ataccaacttattctttgtaaattatggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcct 18141190  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 15368794 - 15368715
Alignment:
Q  20 ttcatacagatacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattc 100  Q
    ||||| || ||||||||||||||||||| ||||||  |||| |||||||||||||  ||  ||||| ||||||||||||||    
T  15368794 ttcatgcatatacctacttttcctttgt-aattatgattgtgatttaagttgtcagccatttggttgttcaaataacattc 15368715  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 13143338 - 13143271
Alignment:
Q  35 acttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||||| ||||||||||||| ||||||    |||||||||| ||||||||| ||||||||||| ||||    
T  13143338 actttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 13143271  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 2689027 - 2688953
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaa-tggtttttcaaataacattcct 102  Q
    |||||||||||| |||| |||||||| |||||||   |||||||||| |||| || || ||||||||||||||||    
T  2689027 atacctactttttctttataaattatggttgtcacaaaagttgtcaaccaaattgattgttcaaataacattcct 2688953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 32046813 - 32046875
Alignment:
Q  35 acttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||| |||| |||||||| ||||||   ||||||||||| ||||||||| |||||||||||    
T  32046813 actttttctttataaattatggttgtcccataagttgtcaaccaaatggttgttcaaataaca 32046875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 6531142 - 6531069
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    |||| ||||||| ||||||||||||| ||||||   | |||| |||| ||||||||| ||||||||||| ||||    
T  6531142 atacatactttttctttgtaaattatggttgtcccattagttatcaaccaaatggttgttcaaataacactcct 6531069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 35213523 - 35213450
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| |||||||||||||  |||||    |||||||||| ||||||||| ||||||||||| ||||    
T  35213523 ataccaactttttctttgtaaattatgattgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 35213450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 1369469 - 1369537
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    ||||| |||||| ||||||||||||| ||||||    || ||||||| ||||||||| |||||||||||    
T  1369469 ataccaactttttctttgtaaattatggttgtctcaaaaattgtcaaccaaatggttgttcaaataaca 1369537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 22341133 - 22341069
Alignment:
Q  33 ctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataaca 97  Q
    |||||||| ||||||||||||| |||||||  ||||||||||   || ||||| |||||||||||    
T  22341133 ctactttttctttgtaaattattgttgtcaaataagttgtcaccaaattggttgttcaaataaca 22341069  T

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Target: scaffold0532 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 11073 - 11146
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| |||||||||||||  ||||||  ||||||||||| |||| |||| ||||||||||| ||||    
T  11073 atacccactttttctttgtaaattatgattgtcacataagttgtcaaccaaaaggttgttcaaataacactcct 11146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38534 - 38607
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||||||||||    ||||||||||  |||||||| ||||||||||| ||||    
T  38534 ataccaactttttctttgtaaattatagttgtcccaaaagttgtcaactaaatggttgttcaaataacactcct 38607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 12041 - 12114
Alignment:
Q  29 atacctacttttcctttgtaaattatagttgtcatttaagttgtcaatcaaatggtttttcaaataacattcct 102  Q
    ||||| |||||| ||||||||||||| ||||||    |||||||||| ||||| ||| ||||||||||| ||||    
T  12041 ataccaactttttctttgtaaattatggttgtcgcaaaagttgtcaaccaaatagttgttcaaataacactcct 12114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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