View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14849_low_3 (Length: 495)
Name: NF14849_low_3
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_low_3 |
 | |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Complemental strand, 5953442 - 5952963
Alignment:
| Q |
17 |
aacttttgaaattcattctttttattgtcgtagctagaaatagattacacattttactttaattcttattttcagttggtgtgatatatataacagcttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5953442 |
aacttttgaaattcattctttttattgtcgtagctagaaatagattacacattttactgtaattcttattttcagttggtgtgatatatataacagcttg |
5953343 |
T |
|
| Q |
117 |
aatgttttatatagttactaatctctagtgatatggttcactagaaggccttagagagattt-gagctgacatatgtgaaacacatacagtctgaatata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5953342 |
aatgttttatatagttactaatctctagtgatatggttcactagaaggccttagagagattttgagctgacatatgtgaaacacatacagtctgaatata |
5953243 |
T |
|
| Q |
216 |
gagacagtaaagatgaaatcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatgg |
315 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5953242 |
gagaccgtaaagatgaaatcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatgg |
5953143 |
T |
|
| Q |
316 |
tgattggttgctgggtttttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5953142 |
tgattggttgctgggtttttctgaattttgtggtattacttcttgtttggcagccgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcg |
5953043 |
T |
|
| Q |
416 |
ggccacatgaacattattcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5953042 |
ggccacgggaacattattcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
5952963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 495
Target Start/End: Original strand, 13583275 - 13583532
Alignment:
| Q |
239 |
aaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctg |
338 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| | ||| |||| ||||||||| |||||| ||||||||||||||| ||| |||| || |||| ||| |
|
|
| T |
13583275 |
aaagttaatgttgatagtagttttctttctaatcataggatatcacgttttggagatcttatgagaaacaataatggtaattagttgttgagtttcactg |
13583374 |
T |
|
| Q |
339 |
aattttgttgta-ttacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttg |
437 |
Q |
| |
|
|||||| ||| ||| |||||| || | |||||||||| || |||||| |||||||| |||| ||||||| || |||| || ||||||||||| |
|
|
| T |
13583375 |
gtttttgtggtatttatttcttgcttcagagctgaattgtatgccacctttcatagccttcgtattgcatatgatgttggacacaagagcattattcttg |
13583474 |
T |
|
| Q |
438 |
aatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||| ||||||||| |||| | | || ||||||||| |||||| ||| ||| |||||| |
|
|
| T |
13583475 |
aatctgattctagggtggctcattatctaatcatgttggatgttcaacctcgtcatcc |
13583532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 239 - 495
Target Start/End: Original strand, 7022554 - 7022810
Alignment:
| Q |
239 |
aaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctg |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
7022554 |
aaagttaatgttgacggtagttctctttctaatcctgaaagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttttg |
7022653 |
T |
|
| Q |
339 |
aattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttga |
438 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
7022654 |
gattttgtggtattacttcttgcttggcggccgaattgtatgtcatttttcatggccttcgtattgcgtatggtgcgggctacatgaacattattcttga |
7022753 |
T |
|
| Q |
439 |
atcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7022754 |
gtcagattctaggatggctcttgatttaatcatgtcggatgtccaatctcatcatcc |
7022810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 233 - 495
Target Start/End: Complemental strand, 26292623 - 26292359
Alignment:
| Q |
233 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
332 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26292623 |
atcatcaaagttaatgttgacggtatttctctttctaatcatggaagatcagtttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
26292524 |
T |
|
| Q |
333 |
tttct--gaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacatt |
430 |
Q |
| |
|
||| | | ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
26292523 |
tttttatggattttgtggtattacttcttgcttggcggccgaattgtatgccatttttcatggccttcgtattgcgtatgatgcaggctacatgaacatt |
26292424 |
T |
|
| Q |
431 |
attcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
26292423 |
attcttgaatcagattctaggagggctcttgatttaaacatgtcgagtgtccaatctcgtcatcc |
26292359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 249 - 495
Target Start/End: Original strand, 34252052 - 34252300
Alignment:
| Q |
249 |
ttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctgaattttgttg |
348 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| | |
|
|
| T |
34252052 |
ttgacggtagttctctttctaattctgaaagatcgggttttggaggttttattagaaacaataatggtgattggttgctggatttttctgtattttgtgg |
34252151 |
T |
|
| Q |
349 |
tattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattct |
448 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||| || |||||||||| ||| ||| ||||||||||||||| | ||||||| |
|
|
| T |
34252152 |
tattacttcttgcttggcggccgaattgtatgccatttttcatggccttcgtattacgtatgatgcaggctacaagaacattattcttgagtgagattct |
34252251 |
T |
|
| Q |
449 |
aggatggcccttgatttaatcatg--tcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
34252252 |
aggatggctcttgatttaatcatgtctcggatgtccaatcttatcatcc |
34252300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 233 - 494
Target Start/End: Original strand, 10570377 - 10570639
Alignment:
| Q |
233 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
332 |
Q |
| |
|
||||| |||||||||||| || ||||||||||||||||||||| | || ||||||||||||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
10570377 |
atcatcaaagttaatgttagcgatagttctctttctaatcctggaatataaggttttggaggtcttattagaaaccataacaatgattggttgttgggtc |
10570476 |
T |
|
| Q |
333 |
tttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatt-tttcatggccttcgtgttgcgtatgatgcgggccacatgaacatta |
431 |
Q |
| |
|
||||| |||||| |||||| || ||| |||| |||||||||||||| | |||||||| |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
10570477 |
tttctagtttttgtggtattattttttgcttggtggtcgaattgtatgaaacaatttcatggtcttcgtattgcgtatgatgcgggccatgtgaacatta |
10570576 |
T |
|
| Q |
432 |
ttcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatc |
494 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||| ||| ||||| |
|
|
| T |
10570577 |
ttcttgaatcagattctaggatggctcttaatttaattatgtcggatatccaacctcgtcatc |
10570639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 233 - 495
Target Start/End: Complemental strand, 15917590 - 15917328
Alignment:
| Q |
233 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
332 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
15917590 |
atcatcaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttatttgaaaaagtaatggtgattggttgctgggtt |
15917491 |
T |
|
| Q |
333 |
tttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattat |
432 |
Q |
| |
|
||| | ||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
15917490 |
tttatagattttgtggtattacttcttgcttggcggccaaattgtatgtcatttttcatggccttcgtattgcgtatgatgcgggtcacaagaacattat |
15917391 |
T |
|
| Q |
433 |
tcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15917390 |
tcttgaatcagattttaggatggctcttgatttaatcatgtcggatgtccaatctcatcatcc |
15917328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 373 - 494
Target Start/End: Complemental strand, 8567802 - 8567681
Alignment:
| Q |
373 |
attgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattctaggatggcccttgatttaatcatg |
472 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||| | |||| ||||| |||||||| |
|
|
| T |
8567802 |
attgtatgtcatttttcacggccttcgtattgcgtatgatgcgggtcaagggaacattattcttgaatcagattctatggtggcttttgatctaatcatg |
8567703 |
T |
|
| Q |
473 |
tcggatgtccaatctcatcatc |
494 |
Q |
| |
|
||||||||| || ||||||||| |
|
|
| T |
8567702 |
tcggatgtcgaacctcatcatc |
8567681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 233 - 495
Target Start/End: Original strand, 5170988 - 5171250
Alignment:
| Q |
233 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
332 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
5170988 |
atcatcaaagttaatgttgacggtagttctctttctaatcctggaagatcaggttttggaggtcttattagtgacaataatggtgattggttgctggatt |
5171087 |
T |
|
| Q |
333 |
tttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattat |
432 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||| ||| |||||||| |
|
|
| T |
5171088 |
tttctggattttgtggtattacttcttacttggcggccgaattgtatgccatttttcatggcctttgtattgcgtatgatgcgggctacaaaaacattat |
5171187 |
T |
|
| Q |
433 |
tcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5171188 |
tcttgagtcagattctaggatggctcttgatttaatcatgtcggatgtccaatctcatcatcc |
5171250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 249 - 495
Target Start/End: Original strand, 6770757 - 6771008
Alignment:
| Q |
249 |
ttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggttttt-----ctgaattt |
343 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
6770757 |
ttgacggtagttatctttctgatcatgggagatcaggttttggaggtcttataagaaacaataatggtgattggttgctgggtttttttcttctagattt |
6770856 |
T |
|
| Q |
344 |
tgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcag |
443 |
Q |
| |
|
||| ||||||||||||| ||||||| ||||||||||| ||||||| |||| |||| | |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6770857 |
tgtggtattacttcttgcttggcggccgaattgtatgccattttttatggtcttcatattgcgtatgatgcgggtcacatgaacattattcttgaatcaa |
6770956 |
T |
|
| Q |
444 |
attctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
6770957 |
attataggatggctcttgatttaatcatgtcgaatgtcgaatctcatcatcc |
6771008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 349 - 495
Target Start/End: Complemental strand, 33931707 - 33931559
Alignment:
| Q |
349 |
tattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattct |
448 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||| |||| |||||| |||||||||||||||| ||||||||||||||| |||||||||||| | |
|
|
| T |
33931707 |
tattacttcttgtttgacggccgaattgtatgccattttttatggtcttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt |
33931608 |
T |
|
| Q |
449 |
aggatggccc--ttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||||| | | |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33931607 |
aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcc |
33931559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 239 - 495
Target Start/End: Complemental strand, 55429284 - 55429027
Alignment:
| Q |
239 |
aaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctg |
338 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55429284 |
aaagttaatgttgacggtagttctctttcaaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgactggttgctgggtttttctg |
55429185 |
T |
|
| Q |
339 |
aattttgttgtattacttcttgtttggcggtcgaattgtatgtcattttt-catggccttcgtgttgcgtatgatgcgggccacatgaacattattcttg |
437 |
Q |
| |
|
||||||| |||||||||| || ||||| | |||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55429184 |
gattttgtggtattacttcctgcttggcagctgaattgtatgccatttttgcacggccttcgtattgcgtatgatgcgggccacatgaacattattcttg |
55429085 |
T |
|
| Q |
438 |
aatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55429084 |
aatcagattccaggatggctattgatttaatcatgtcggatgtcgaatctcatcatcc |
55429027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 233 - 495
Target Start/End: Complemental strand, 29018946 - 29018685
Alignment:
| Q |
233 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
332 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||| ||||||||||||||| || | ||| |
|
|
| T |
29018946 |
atcatcaaagttaacgttgacggtagttctctttctaatcttggaagatcaggttttggaggtcttatcaaaaa-aataatggtgattggatgttttgtt |
29018848 |
T |
|
| Q |
333 |
tttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattat |
432 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||| | | ||||||||| ||||||||||||||||||| ||| || ||||||||| |||||||||||||| |
|
|
| T |
29018847 |
tttctgatttttgtggtattacttcttgcttggctgccaaattgtatgccatttttcatggccttcgtattgtgtgtgatgcgggtcacatgaacattat |
29018748 |
T |
|
| Q |
433 |
tcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||||||| |||||||| | || | |||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
29018747 |
tcttgaattagattctaaggtgactcttgatctaatcatgtcggatgtccaacctcatcatcc |
29018685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 495
Target Start/End: Complemental strand, 17065474 - 17065242
Alignment:
| Q |
256 |
tagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctgaattttgttgtattact |
355 |
Q |
| |
|
||||||||| |||||| ||| |||| |||||||| ||||||| |||| | |||| ||||||||||| ||||||| | ||| |||| | |||||| | |
|
|
| T |
17065474 |
tagttctctatctaatattggaagataaggttttgacggtcttaaaagaagtagtaatagtgattggttgttgggtttctttgatttttatggtattatt |
17065375 |
T |
|
| Q |
356 |
tcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattctaggatgg |
455 |
Q |
| |
|
| || ||||| | |||||||||| |||||| ||| |||||||||| | ||||||| | ||||| ||||||||||| ||||||||| || |
|
|
| T |
17065374 |
ttttacttggcagcagaattgtatgccattttatatgaccttcgtgttacttatgatgatgatcacat-------attcttgaatccgattctagggtga |
17065282 |
T |
|
| Q |
456 |
cccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
| ||||||||||| |||||| || ||||| |||||||||| |
|
|
| T |
17065281 |
ctcttgatttaattatgtcgaatttccaacctcatcatcc |
17065242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 239 - 495
Target Start/End: Complemental strand, 19816673 - 19816417
Alignment:
| Q |
239 |
aaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctg |
338 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
19816673 |
aaagttaatgttgacgatagttctctttctaattctggaagatcaggttttggaggtcttattagaaacaataatggtgattggttccggggtttttctg |
19816574 |
T |
|
| Q |
339 |
aattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttga |
438 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
19816573 |
gattttgtggtattacttcttgcttggcggctgaattgtatgctatttttcatggccttcgtattgcatatgatgcgggccatatgagcattattcttga |
19816474 |
T |
|
| Q |
439 |
atcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19816473 |
atcagattctaggatggctcttgatttaatcatgtcggatgttgaatctcatcatcc |
19816417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 233 - 432
Target Start/End: Original strand, 21374852 - 21375052
Alignment:
| Q |
233 |
atcataaaagttaatgttgacggtagttctctttctaatcc-tgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggt |
331 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
21374852 |
atcatcaaagttaatgttgacggtagttctctttctaattaatggaagatcaggttttggaggttttattagaaacaataacggtgattggttgttgggt |
21374951 |
T |
|
| Q |
332 |
ttttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacatta |
431 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||| | ||||||||| |||||||||| |||||||| |||| ||| |||||||||||| |||||||| |
|
|
| T |
21374952 |
ttttctgaattttgtggtattacttctttcttgacggacaaattgtatgccatttttcattgccttcgtattgcatataatgcgggccacaggaacatta |
21375051 |
T |
|
| Q |
432 |
t |
432 |
Q |
| |
|
| |
|
|
| T |
21375052 |
t |
21375052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 31619317 - 31619229
Alignment:
| Q |
234 |
tcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattgg |
322 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||| |||||| | ||| | | ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31619317 |
tcattaaagttaatgttgacgatagttctatttttaatccatgaagaccggattttggaggtcttataagaaacaataatggtgattgg |
31619229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 233 - 484
Target Start/End: Original strand, 29763013 - 29763267
Alignment:
| Q |
233 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
332 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||| ||||||| ||||| || || |||||||||| |||||||||||||||||||| ||| |||||| |
|
|
| T |
29763013 |
atcatcaaagttattgttgacgatagttctctttccaatcctgaaagatcgggaatttgaggtcttataagaaacaataatggtgattgattgttgggtt |
29763112 |
T |
|
| Q |
333 |
tttctgaattttgttgt---attacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacat |
429 |
Q |
| |
|
|| | || |||||| || ||||||||||| || ||| ||||| |||||||||||||||| ||||||| || ||||||||| ||| |||| |||||| |
|
|
| T |
29763113 |
ttccggatttttgtggttttattacttcttgcttagcgacagaattatatgtcatttttcatgaccttcgtattacgtatgatgtggggcacaagaacat |
29763212 |
T |
|
| Q |
430 |
tattcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaa |
484 |
Q |
| |
|
||||||||||| ||| ||||| |||| ||||||||||||| ||| ||||||||| |
|
|
| T |
29763213 |
tattcttgaatttgatactagggtggctcttgatttaatcacgtcagatgtccaa |
29763267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 366
Target Start/End: Original strand, 16091065 - 16091153
Alignment:
| Q |
278 |
agatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctgaattttgttgtattacttcttgtttggc |
366 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||||||| ||| ||||| | | ||| |||||| |||||||||||| |||||| |
|
|
| T |
16091065 |
agattaggttttggaggtcttataagaaacaatgatggtgatttattgttgggtatctttgatttttgtggtattacttcttatttggc |
16091153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 297 - 495
Target Start/End: Complemental strand, 35947027 - 35946828
Alignment:
| Q |
297 |
ttattagaaacaataatggtgattggttgctgggttttt-ctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggcc |
395 |
Q |
| |
|
|||| ||||| ||||||| |||||||||| || |||||| ||| |||||| ||||||||||||||||| ||| ||||||| ||||||||||||| | || |
|
|
| T |
35947027 |
ttataagaaataataatgatgattggttgttgcgttttttctggtttttgtggtattacttcttgtttgacggccgaattgcatgtcatttttcaagacc |
35946928 |
T |
|
| Q |
396 |
ttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
495 |
Q |
| |
|
|| || |||||||||||||||| |||||||||||||||||||||||| ||||| ||||| | |||||| ||||||||| ||||| |||| ||||||||| |
|
|
| T |
35946927 |
tttgtattgcgtatgatgcgggacacatgaacattattcttgaatcatattcttggatgactcttgatctaatcatgttggatgcccaacatcatcatcc |
35946828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 28175138 - 28175228
Alignment:
| Q |
351 |
ttacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatc |
441 |
Q |
| |
|
||||| |||| ||| ||||| |||| |||| ||||||||||| ||||||| ||| ||||||||| || | |||||||||||||||||||| |
|
|
| T |
28175138 |
ttactacttgcttgacggtcaaattatatgccatttttcatgaccttcgtcttgtgtatgatgcagggaatatgaacattattcttgaatc |
28175228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 28175088 - 28175139
Alignment:
| Q |
283 |
aggttttggaggtcttattagaaacaataatggtgattggttgctgggtttt |
334 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
28175088 |
aggttttagaggtcttacaagaaacaataatggtgatgggttgttgggtttt |
28175139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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