View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_low_5 (Length: 466)
Name: NF14849_low_5
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 24691364 - 24690922
Alignment:
| Q |
1 |
tcagatattatgttggatttttcaactataactcacgctattaatcgttctttatctactcaacaatcaagcatagacctctttacatcttcttcaagac |
100 |
Q |
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|||||||| | ||||||| ||||||| | |||||| |||||| || || ||||||| ||||| ||| |||||||| |||| ||| ||||||||||||||| |
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| T |
24691364 |
tcagatatcaagttggatatttcaacaagaactcaagctattgatagtcctttatccactcagcaaacaagcataaacctatttccatcttcttcaagac |
24691265 |
T |
|
| Q |
101 |
cagaaccaattcctcatccactctttctaaccaattcaagacaagacattcagtgtcaaaagattgatcacatggttaaagaagaaagcttgagtaacat |
200 |
Q |
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| T |
24691264 |
cagcaggagttcctcatcagctctttcaaacaaattcaagacaagacattcagtgtcaaaagattgatcacatggttaaagaagaaagcttgagtaacat |
24691165 |
T |
|
| Q |
201 |
gttttgtgccatggatgatcaatctggactatggccatggttggagcaacaacacttcaattaattcatcaaataaagggaaggagaaatagttttcaga |
300 |
Q |
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| T |
24691164 |
gttttgtgccatggatgatcaatctggactatggccatggttggagcaacaacacttcaattaattcatcaaataaagggaaggagaaatagttttcaga |
24691065 |
T |
|
| Q |
301 |
ttggagttttcttttcgagatgaaatcaaaagtgcatgcttggataagatcgagcttaataaaattacggtgtgtcactgtgatttttactgtttnnnnn |
400 |
Q |
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| T |
24691064 |
ttggagttttctttt----atgaaatcaaaagtgcatgtttggataagatcgagtttaatagaattac--agtgtcacagtaatttttact-attaaaaa |
24690972 |
T |
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| Q |
401 |
nnngcactttgaaatttcaacaagatgacgatgttactgtgatttcatca |
450 |
Q |
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| T |
24690971 |
aaagtactttgaaatttcaacaaactgacgatgttactgtgatttcatca |
24690922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 135 - 262
Target Start/End: Complemental strand, 17180763 - 17180636
Alignment:
| Q |
135 |
ttcaagacaagacattcagtgtcaaaagattgatcacatggttaaagaagaaagcttgagtaacatgttttgtgccatggatgatcaatctggactatgg |
234 |
Q |
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|||||| | ||| ||||| || |||||||||||||| ||||| ||||||||||| || || ||||||||||||| |||||||||||| ||||| | ||| |
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| T |
17180763 |
ttcaaggccagaaattcaatgccaaaagattgatcaaatggtcaaagaagaaagtttaagcaacatgttttgtggtatggatgatcaagctggattttgg |
17180664 |
T |
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| Q |
235 |
ccatggttggagcaacaacacttcaatt |
262 |
Q |
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| T |
17180663 |
ccatggttggagcaacaacatttcaatt |
17180636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 30994978 - 30994884
Alignment:
| Q |
168 |
tcacatggttaaagaagaaagcttgagtaacatgttttgtgccatggatgatcaatctggactatggccatggttggagcaacaacacttcaatt |
262 |
Q |
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| T |
30994978 |
tcacatggtcaaagaagaaagcttaagcgatgcattttgtggcattgatgatcaatctgggctgtgagcatggttggagaagcaacacttcaatt |
30994884 |
T |
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