View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14849_low_8 (Length: 398)

Name: NF14849_low_8
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14849_low_8
NF14849_low_8
[»] chr5 (21 HSPs)
chr5 (82-386)||(38187444-38187748)
chr5 (82-386)||(38210609-38210913)
chr5 (82-381)||(38453775-38454075)
chr5 (128-384)||(38168792-38169047)
chr5 (128-384)||(38198057-38198312)
chr5 (82-299)||(38178599-38178816)
chr5 (82-299)||(38205823-38206040)
chr5 (236-288)||(38191803-38191855)
chr5 (236-288)||(38219028-38219080)
chr5 (298-381)||(38179060-38179143)
chr5 (298-381)||(38206284-38206367)
chr5 (248-308)||(37171838-37171898)
chr5 (191-238)||(38191934-38191981)
chr5 (191-238)||(38219159-38219206)
chr5 (17-55)||(38169180-38169218)
chr5 (17-55)||(38197886-38197924)
chr5 (17-51)||(38187777-38187811)
chr5 (17-51)||(38210546-38210580)
chr5 (17-55)||(38453711-38453749)
chr5 (289-336)||(38191873-38191920)
chr5 (289-336)||(38219098-38219145)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 82 - 386
Target Start/End: Complemental strand, 38187748 - 38187444
Alignment:
Q  82 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgtagtatctatcaaaggaacctacctaagccaatta 181  Q
    ||||||||||||||||||||||| ||| |||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38187748 gaaaaatctgcaattagtgaagggtagatttggaataataaaaaaatccaaaagcaaaacgagtgtagtatctatcaaaggaacctgcctaagccaatta 38187649  T
Q  182 tcatctattgcaccccgatctggagattcatccgcaaccatgaacaactgggacacaccgctaacggaataacctttaatgagatcaagtaaccacttcc 281  Q
    |||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38187648 tcatctatcgcagcctgatctggaggttcatttgcaaccatgaacaactgggacacactgctaacggaataacctttaatgagatcaagtaaccacttcc 38187549  T
Q  282 aaccatcagaaacatttgcctgcaaaacaatgttatgtagcaaaaacaaagactcatgaagaatagttttctaccacgcacacaacctcctcctccactt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38187548 aaccatcagaaacatttgcctgcaaaacaatgttatgtagcaaaaacaaagactcatgaagaatagttttctaccacgcacacaacctcctcctccactt 38187449  T
Q  382 tgatg 386  Q
    |||||    
T  38187448 tgatg 38187444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 82 - 386
Target Start/End: Original strand, 38210609 - 38210913
Alignment:
Q  82 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgtagtatctatcaaaggaacctacctaagccaatta 181  Q
    ||||||||||||||||||||||| ||| |||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38210609 gaaaaatctgcaattagtgaagggtagatttggaataataaaaaaatccaaaagcaaaacgagtgtagtatctatcaaaggaacctgcctaagccaatta 38210708  T
Q  182 tcatctattgcaccccgatctggagattcatccgcaaccatgaacaactgggacacaccgctaacggaataacctttaatgagatcaagtaaccacttcc 281  Q
    |||||||| ||| || ||||||||| |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38210709 tcatctatcgcagcctgatctggaggttcatttgcaaccatgaacaactgggacacactgctaacggaataacctttaatgagatcaagtaaccacttcc 38210808  T
Q  282 aaccatcagaaacatttgcctgcaaaacaatgttatgtagcaaaaacaaagactcatgaagaatagttttctaccacgcacacaacctcctcctccactt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38210809 aaccatcagaaacatttgcctgcaaaacaatgttatgtagcaaaaacaaagactcatgaagaatagttttctaccacgcacacaacctcctcctccactt 38210908  T
Q  382 tgatg 386  Q
    |||||    
T  38210909 tgatg 38210913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 82 - 381
Target Start/End: Original strand, 38453775 - 38454075
Alignment:
Q  82 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgtagtatctatcaaaggaacctacctaagccaatta 181  Q
    |||||||||||||||| |||||| |||||||||||||||       ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||    
T  38453775 gaaaaatctgcaattaatgaagggtaggtttggaataataaaaaaatccaaaagcaaaaagagtgtagtatctatcaaaggaacctgcctaagccaaata 38453874  T
Q  182 tcatctattgcaccccgatctggagattcatccgcaaccatgaacaactgggacacaccgctaacggaataacctttaatgagatcaagtaaccacttcc 281  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38453875 tcatctatcgcaccctgatctggaggttcatccgcaaccatgaacaactgggacacaccgctaacggaataacctttaatgagatcaagtaaccacttcc 38453974  T
Q  282 aaccatcagaaacatttgcctgcaaaacaatgttatgtagcaaaaaca-aagactcatgaagaatagttttctaccacgcacacaacctcctcctccact 380  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| | |||||||   |||||||||   ||||||| |||||||| ||||||||||||    
T  38453975 aaccatcagaaacatttgcctgcaaaacaatgttacgtagcaaaaaaacaagactcccaaagaatagtcccctaccacacacacaacatcctcctccact 38454074  T
Q  381 t 381  Q
    |    
T  38454075 t 38454075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 128 - 384
Target Start/End: Complemental strand, 38169047 - 38168792
Alignment:
Q  128 tccaaaagcaaaacgagtgtag----tatctatcaaaggaacctacctaagccaattatcatctattgcaccccgatctggagattcatccgcaaccatg 223  Q
    ||||||||||||| |||||||     |||||||||||||||| | ||||| |||  |||||||||| ||| ||||||     | ||||||||||||||||    
T  38169047 tccaaaagcaaaaggagtgtatatattatctatcaaaggaacatgcctaaaccagatatcatctatagcaacccgat-----ggttcatccgcaaccatg 38168953  T
Q  224 aacaactgggacacaccgctaacggaataacctttaatgagatcaagtaaccacttccaaccatcagaaacatttgcctgcaaaacaatgttatgtagca 323  Q
    ||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38168952 aacaactgatacacactactaacggaataacctttaatgagatcaagtaaccacttccaaccatcagaaacatttacctgcaaaacaatgttatgtagca 38168853  T
Q  324 aaaacaaagactcatgaagaatagttttctaccacgcacacaacctcctcctccactttga 384  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38168852 aaaacaaagacttatgaagaatagttctctaccacgcacacaacctcctcctccactttga 38168792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 128 - 384
Target Start/End: Original strand, 38198057 - 38198312
Alignment:
Q  128 tccaaaagcaaaacgagtgtag----tatctatcaaaggaacctacctaagccaattatcatctattgcaccccgatctggagattcatccgcaaccatg 223  Q
    ||||||||||||| |||||||     |||||||||||||||| | ||||| |||  |||||||||| ||| ||||||     | ||||||||||||||||    
T  38198057 tccaaaagcaaaaggagtgtatatattatctatcaaaggaacatgcctaaaccagatatcatctatagcaacccgat-----ggttcatccgcaaccatg 38198151  T
Q  224 aacaactgggacacaccgctaacggaataacctttaatgagatcaagtaaccacttccaaccatcagaaacatttgcctgcaaaacaatgttatgtagca 323  Q
    ||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38198152 aacaactgatacacactactaacggaataacctttaatgagatcaagtaaccacttccaaccatcagaaacatttacctgcaaaacaatgttatgtagca 38198251  T
Q  324 aaaacaaagactcatgaagaatagttttctaccacgcacacaacctcctcctccactttga 384  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38198252 aaaacaaagacttatgaagaatagttctctaccacgcacacaacctcctcctccactttga 38198312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 299
Target Start/End: Original strand, 38178599 - 38178816
Alignment:
Q  82 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgtagtatctatcaaaggaacctacctaagccaatta 181  Q
    ||||||| |||||||| ||||||||||||||||||||||       ||||||||||||| ||||||| ||||| |||||||||| | |||||||||| ||    
T  38178599 gaaaaatttgcaattaatgaaggttaggtttggaataataaaaaaatccaaaagcaaaaagagtgtattatctttcaaaggaacttgcctaagccaaata 38178698  T
Q  182 tcatctattgcaccccgatctggagattcatccgcaaccatgaacaactgggacacaccgctaacggaataacctttaatgagatcaagtaaccacttcc 281  Q
    |||| |||  ||||||||| ||||  ||| ||   | ||||||||| |||  |||||||    ||  ||||| |||||||| ||||||||||||||||||    
T  38178699 tcatatatcacaccccgatttggaagttcttctatagccatgaacagctgatacacaccatggacaaaataatctttaatgggatcaagtaaccacttcc 38178798  T
Q  282 aaccatcagaaacatttg 299  Q
    |||||||| |||||||||    
T  38178799 aaccatcaaaaacatttg 38178816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 299
Target Start/End: Original strand, 38205823 - 38206040
Alignment:
Q  82 gaaaaatctgcaattagtgaaggttaggtttggaataatnnnnnnntccaaaagcaaaacgagtgtagtatctatcaaaggaacctacctaagccaatta 181  Q
    ||||||| |||||||| ||||||||||||||||||||||       ||||||||||||| ||||||| ||||| |||||||||| | |||||||||| ||    
T  38205823 gaaaaatttgcaattaatgaaggttaggtttggaataataaaaaaatccaaaagcaaaaagagtgtattatctttcaaaggaacttgcctaagccaaata 38205922  T
Q  182 tcatctattgcaccccgatctggagattcatccgcaaccatgaacaactgggacacaccgctaacggaataacctttaatgagatcaagtaaccacttcc 281  Q
    |||| |||  ||||||||| ||||  ||| ||   | ||||||||| |||  |||||||    ||  ||||| |||||||| ||||||||||||||||||    
T  38205923 tcatatatcacaccccgatttggaagttcttctatagccatgaacagctgatacacaccatggacaaaataatctttaatgggatcaagtaaccacttcc 38206022  T
Q  282 aaccatcagaaacatttg 299  Q
    |||||||| |||||||||    
T  38206023 aaccatcaaaaacatttg 38206040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 38191855 - 38191803
Alignment:
Q  236 acaccgctaacggaataacctttaatgagatcaagtaaccacttccaaccatc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38191855 acaccgctaacggaataacctttaatgagatcaagtaaccacttccaaccatc 38191803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 38219080 - 38219028
Alignment:
Q  236 acaccgctaacggaataacctttaatgagatcaagtaaccacttccaaccatc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38219080 acaccgctaacggaataacctttaatgagatcaagtaaccacttccaaccatc 38219028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 381
Target Start/End: Original strand, 38179060 - 38179143
Alignment:
Q  298 tgcctgcaaaacaatgttatgtagcaaaaacaaagactcatgaagaatagttttctaccacgcacacaacctcctcctccactt 381  Q
    ||||||||||||||||||||||||||||||  || ||||  |||||||||| |  ||||| ||| |||||||||||||||||||    
T  38179060 tgcctgcaaaacaatgttatgtagcaaaaaacaacactccagaagaatagtatcataccatgcaaacaacctcctcctccactt 38179143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 381
Target Start/End: Original strand, 38206284 - 38206367
Alignment:
Q  298 tgcctgcaaaacaatgttatgtagcaaaaacaaagactcatgaagaatagttttctaccacgcacacaacctcctcctccactt 381  Q
    ||||||||||||||||||||||||||||||  || ||||  |||||||||| |  ||||| ||| |||||||||||||||||||    
T  38206284 tgcctgcaaaacaatgttatgtagcaaaaaacaacactccagaagaatagtatcataccatgcaaacaacctcctcctccactt 38206367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 37171838 - 37171898
Alignment:
Q  248 gaataacctttaatgagatcaagtaaccacttccaaccatcagaaacatttgcctgcaaaa 308  Q
    |||||||||||||| |||||||||||||| ||||||| |||| |||||||| |||||||||    
T  37171838 gaataacctttaatcagatcaagtaaccatttccaacaatcataaacattttcctgcaaaa 37171898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 38191981 - 38191934
Alignment:
Q  191 gcaccccgatctggagattcatccgcaaccatgaacaactgggacaca 238  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  38191981 gcaccctgatctggaggttcatccgcaaccatgaacaactgggacaca 38191934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 38219206 - 38219159
Alignment:
Q  191 gcaccccgatctggagattcatccgcaaccatgaacaactgggacaca 238  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  38219206 gcaccctgatctggaggttcatccgcaaccatgaacaactgggacaca 38219159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 38169218 - 38169180
Alignment:
Q  17 aaacttatcccatttatattgccatgtatatcgcatacc 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38169218 aaacttatcccatttatattgccatgtatatcgcatacc 38169180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 38197886 - 38197924
Alignment:
Q  17 aaacttatcccatttatattgccatgtatatcgcatacc 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38197886 aaacttatcccatttatattgccatgtatatcgcatacc 38197924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 38187811 - 38187777
Alignment:
Q  17 aaacttatcccatttatattgccatgtatatcgca 51  Q
    |||||||||||||||||||||||||||||||||||    
T  38187811 aaacttatcccatttatattgccatgtatatcgca 38187777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 38210546 - 38210580
Alignment:
Q  17 aaacttatcccatttatattgccatgtatatcgca 51  Q
    |||||||||||||||||||||||||||||||||||    
T  38210546 aaacttatcccatttatattgccatgtatatcgca 38210580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 38453711 - 38453749
Alignment:
Q  17 aaacttatcccatttatattgccatgtatatcgcatacc 55  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  38453711 aaacttatcccatttatattgtcatgtatatcgcatacc 38453749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 38191920 - 38191873
Alignment:
Q  289 agaaacatttgcctgcaaaacaatgttatgtagcaaaaacaaagactc 336  Q
    ||||||||||| |||||||||||||||| ||||||||||  |||||||    
T  38191920 agaaacatttgtctgcaaaacaatgttacgtagcaaaaaacaagactc 38191873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 38219145 - 38219098
Alignment:
Q  289 agaaacatttgcctgcaaaacaatgttatgtagcaaaaacaaagactc 336  Q
    ||||||||||| |||||||||||||||| ||||||||||  |||||||    
T  38219145 agaaacatttgtctgcaaaacaatgttacgtagcaaaaaacaagactc 38219098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University