View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484R-Insertion-12 (Length: 537)
Name: NF1484R-Insertion-12
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484R-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 509
Target Start/End: Complemental strand, 31284627 - 31284134
Alignment:
| Q |
8 |
actactaaatcattgatatctaaaaattgaagatatattagggagttgaagattatgaggaggaatttgcattctcttttcagtttctttcaattttatg |
107 |
Q |
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| T |
31284627 |
actactaaatcattgatatctaaaaattgaagatatat-agggagttgaatattatgaggaggaatttgcattctcttttcagtttctttcaattttatg |
31284529 |
T |
|
| Q |
108 |
acatttccaagtttcaatacttcacttgcatgggatctaaacagggctatgcaatgcaactccaaagcacagcgcatgtgagactaatccaaaataatca |
207 |
Q |
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| T |
31284528 |
acatttccaagtttcaatacttcacttgcatggaatctaaacagggctatgcaatgcacctccaaagcacagcgcatgtgagactaatccaaaataatca |
31284429 |
T |
|
| Q |
208 |
aatctaaaaaatccaagctacccctgataagcatcattctgctctaagacattgatcccaacaaacatcaccgaacatttcttattgtgtgctcnnnnnn |
307 |
Q |
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| T |
31284428 |
aatctaaaaaatccaagctacccctgataagcatcattctgctctaagacattgatcccaacaaacatcactgaacatttcttattgtgtgctc--tttt |
31284331 |
T |
|
| Q |
308 |
nnnnnnnaaaggattgtgtgctcctaaattgatattaaaatctatcttaaattgatcactgaaaagagtaaaaacacaatgaaggaagcaataaggttgc |
407 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||| | || ||||| |||||| |
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| T |
31284330 |
ttttttgaaaggattgtatgctcctaaattgatattaaaatctatcttaaattgatcgctaaaaagggtaaaaa-acaatggatgaggcaatgaggttga |
31284232 |
T |
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| Q |
408 |
aaactgaaataaatatgggtcatgcttggataaacaagttagttagttacttgcttctaacataagtgtttatcaattaagtgtatatgtatatttctat |
507 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
31284231 |
aaactgaaataaatatgggtcatgtttggataaaca----agttagttacttgcttcgaacataagtgtttgtcaattaagtatatatgtatatttctat |
31284136 |
T |
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