View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484R-Insertion-13 (Length: 562)
Name: NF1484R-Insertion-13
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484R-Insertion-13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 27 - 562
Target Start/End: Complemental strand, 28104596 - 28104061
Alignment:
| Q |
27 |
gcgttgacttgaatttatttatttttgaaaggcaaataaaatttcaattaatccaatccaagtacaagacaatccggaattgtgttcaaaattacaaact |
126 |
Q |
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| T |
28104596 |
gcgttgacttgaatttatttatttttgaaaggcaaataaaatttcaattaatccaatccaagtacaagacaatccggaattgtgttcaaaattacaaact |
28104497 |
T |
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| Q |
127 |
acatgagccgataaacagccaatgttcaaataaagcatatgacagatataccacgctcatttgaaacagaacaacaagcgaaatttccccaaagccaaaa |
226 |
Q |
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| T |
28104496 |
acatgagccgataaacagccaatgttcaaataaagcatatgacagatataccaccctcatttgaaacagaacaacaagcgaaatttccccacagccaaaa |
28104397 |
T |
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| Q |
227 |
acaaagcctaataacactaagccacaaaaaggcatcaaaagctgaatactaacagaacaaagctctgcagaagtcacaaaaccgtagcaaaaaatatagc |
326 |
Q |
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| T |
28104396 |
acaaagcctaataacactaagccacaaaaaggcatcaaaagctaaatactaacagaacaaagctctgcagaagtcacaaaaccgtagcaaaaaatatagc |
28104297 |
T |
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| Q |
327 |
agccataaaatgaattgcagcaagaacaaaaagccactgtgcagtacaaaatctgctgaccaaaaaccaccgttcatagccaaacctgccaacacaccac |
426 |
Q |
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| T |
28104296 |
agccataaaatgaattgcagcaagaacaaaaagccactgtgcagtacaaaatctgctgaccaaaaaccaccgttcatagccaaacctgccaacacaccac |
28104197 |
T |
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| Q |
427 |
accaccgctcaaaaacaaaattggcacaaccgtccaaaaggatttggagtgaccaggaaaataaaccaaggcagcaaaacgcaaaaagaaatacagcaga |
526 |
Q |
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| T |
28104196 |
accaccgctcaaaaacaaaactggcacaaccgtccaaaaggatttggagtgaccaggaaaataaaccaaggcagcaaaacgcaaaaagaaatacagcaga |
28104097 |
T |
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| Q |
527 |
acaccactgactcgaataacacaaactgttgcagca |
562 |
Q |
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| T |
28104096 |
acaccactgactcgaataacacaaactgatgcagca |
28104061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 562
Target Start/End: Complemental strand, 26641540 - 26640987
Alignment:
| Q |
12 |
tctacacaaattttggcgttgacttgaatttatttatttttgaaaggcaaataaaatttcaattaatccaatccaagtacaagacaatccggaattgtgt |
111 |
Q |
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| T |
26641540 |
tctacacaaattttagtgctgacttgaatttatttatttttgaacatcaaataaaatttcaattaatccaatcctagcacaagacgaacgggaattgtgt |
26641441 |
T |
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| Q |
112 |
tcaaaattacaaa------ctacatgagccgataaacagccaatgttcaaataaagcatatgacagatataccacgctcatttgaaacagaacaacaagc |
205 |
Q |
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| T |
26641440 |
ccaaaattacaaatacaaactacatgagccgataaacagccaatcttcaaataaagcatatgacagatacaccacgctcacttgaaacagaacaacaacg |
26641341 |
T |
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| Q |
206 |
gaaatttccccaaagccaaaaacaaagcctaataacactaagccacaaaaaggcatcaaaagctgaatactaacagaacaaagctctgcagaagtcacaa |
305 |
Q |
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| T |
26641340 |
gaaattgccccaaagccaaaaacaaagcctaataatactaagccacagaaaagcatcagaagctaaatactaacggaacaaagctcagcagaagtcacaa |
26641241 |
T |
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| Q |
306 |
aaccgtagcaaaaaatatagcagccataaaatgaattgcagcaagaacaaaaagccactgtgcagtacaaaatctgctga-ccaaaaaccaccgttcata |
404 |
Q |
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||| |||| | ||||||||||||| || |||| ||||||||||| ||||||||||||| ||| ||||||||||||| || | |||||||||| | | | |
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| T |
26641240 |
aactgtagaaccaaatatagcagccttagaatgcattgcagcaagtacaaaaagccactatgcggtacaaaatctgcagatcgaaaaaccaccacttaaa |
26641141 |
T |
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| Q |
405 |
gccaaacctgccaacacaccacaccaccgctcaaaaacaaaattggcacaaccgtccaaaaggatttggagtgaccaggaaaataaaccaaggcagcaaa |
504 |
Q |
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| T |
26641140 |
gccaaacctgccaacgcaccacaccaccgctcaaaatcaaaactggcacaacagtccaaacggatttggagtgaccaggacaataaaccaaggcag---a |
26641044 |
T |
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| Q |
505 |
acgcaaaaagaaatacagcagaacaccactgactcgaataacacaaactgttgcagca |
562 |
Q |
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| T |
26641043 |
acacaaaaa-taatgcaacagaacaccactgactcaaataatacaaactgatgcagca |
26640987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 560
Target Start/End: Complemental strand, 28101377 - 28101304
Alignment:
| Q |
486 |
aataaaccaaggcagcaaaacgcaaaaagaaatacagcagaacaccactgactcgaataacacaaactgttgcag |
560 |
Q |
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| T |
28101377 |
aataaaccaaggcattagaatgcaaaaacaa-tgcagcagaacaccacagactcgaataatacaaacagttgcag |
28101304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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