View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484R-Insertion-15 (Length: 950)
Name: NF1484R-Insertion-15
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484R-Insertion-15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 201 - 759
Target Start/End: Original strand, 35050957 - 35051512
Alignment:
| Q |
201 |
ctgagttttctacatctcagatcattgatgggattggcacacaagagagaatttaagcaaatttagctcccttcaatcgaaatcaaaaatattttgttga |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35050957 |
ctgagttttctacatctcaaatcattgatgggattggcacacaacagagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttga |
35051056 |
T |
|
| Q |
301 |
agtaaatcaggtctaaataaataaaagcactctttacttttggttgaacatttatattcatattatggaagtttttgattcagtatatttgtttaacagg |
400 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| | ||||||| |||| ||||||||||| |
|
|
| T |
35051057 |
agtaaatcaggtccaaataaattcaagcactctttacttttgtttgaacatttctattcatattatggaagtatctgattcaatataaatgtttaacagg |
35051156 |
T |
|
| Q |
401 |
tcccatattattctgaaagcataaatcataatattacatgttcagaacttttaaaggtattggttccnnnnnnnctttctcctactgatatagtcaagat |
500 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| || |||| |||||||| | |
|
|
| T |
35051157 |
tcccatactattctcaaagcataaatcataatattacatgttcagaacttttagaggtatcggttccttcttttctttctgttagtgatctagtcaagtt |
35051256 |
T |
|
| Q |
501 |
ttaatataaatcaccaattcttacatttatgtgnnnnnnngtaggcacaacaccatatgattgataaaccatcatgatgaggacatgaatgaaccacttc |
600 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35051257 |
ttaatataaatcagcaattcttacatttatgtg-ttttttgtaggcacaacaccatatgattgataaaccatcagaatgaggacatgaatgaaccacttc |
35051355 |
T |
|
| Q |
601 |
tttgggagatgaaagttgaagatgattgttgcagacttgcaggaactatttacatatattttgtattaagtgattatgacattggattttacatattagg |
700 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| || || | || ||||||||||| || | | ||||||||| ||||| |
|
|
| T |
35051356 |
tttgggagatgagagttgaagatgattgttgcagacttgcagaaactatttaaattta--tagtgttaagtgattaagaaactacattttacatgttagg |
35051453 |
T |
|
| Q |
701 |
atggcaattggagtctgcaccttgtactgttattgaatgttgaagcaactatttagctt |
759 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
35051454 |
atggcaattggaatctacagcttgtactgttattgaatgtagtagaaactatttagctt |
35051512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 35048848 - 35049012
Alignment:
| Q |
9 |
gtatgggttttggaactgttaaaatcaattcaaaatatgcaaaggatggaagnnnnnnnnctttactctaggatgtactcgtgcaagaagctatgtgagt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35048848 |
gtatgggttttggaactgttaaaatcaattcaaaaaatgcaaaggatggaa--aaaaatactttactctaggatgtactcgtgcaagaagctatgtgagt |
35048945 |
T |
|
| Q |
109 |
aactcaaagaaccttttgaaaccaaatcccatcacaagagcacaatgtatggctagagtaaatatgt |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||||| |||||||||||||||||||||| |
|
|
| T |
35048946 |
aactcaaagaaccttttgaaaccaaatcctaccataagagcacagtgtatggctagagtaaatatgt |
35049012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 758 - 943
Target Start/End: Original strand, 35051562 - 35051768
Alignment:
| Q |
758 |
ttggtgttgaaacaatttagcttcagtctcacttttgttctt-gcacattttggaggtttatatttatgtctctttgagtggacatg-ttgttattttgt |
855 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
35051562 |
ttggtgttgaaacaatttagcttcagtcccacttttgttctttgcacattttggaggtttatatttatgtctctttgagtggacatgtttgttactttgt |
35051661 |
T |
|
| Q |
856 |
gatgaggctcttgattgtgttatgt------------------tgttatgtatttgttatatactttagcagtacataaacatgtcttgc-atttagaga |
936 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
35051662 |
gatgaggctcttgattgtgttatgtgctagctgcctagagtggtgttatgtatttgttatatactttagcagtacagaaacatgtcttgcaatttagaga |
35051761 |
T |
|
| Q |
937 |
tcatgac |
943 |
Q |
| |
|
||||||| |
|
|
| T |
35051762 |
tcatgac |
35051768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 15636045 - 15635878
Alignment:
| Q |
9 |
gtatgggttttggaactgttaaaatcaattcaaaatatgcaaaggatggaagnnnnnnnnctttactctaggatgtactcgtgcaagaagctatgtgagt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15636045 |
gtatgggttttggaactgttaaaatcaattaaaaaaatgcaaaggatggaa--aaaaatactttactctaggatgtactcgtgcaagaagctatgtgagt |
15635948 |
T |
|
| Q |
109 |
aactcaaagaaccttttgaaaccaaatcccatcacaagagcacaatgtatggctagagtaaatatgtgtc |
178 |
Q |
| |
|
|||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15635947 |
aactcaaagaaccttttgaaaccaaaccctaccataagagcacaatgtatggctagagtaaacatgtgtc |
15635878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 201 - 593
Target Start/End: Complemental strand, 20006449 - 20006058
Alignment:
| Q |
201 |
ctgagttttctacatctcagatcattgatgggattggcacacaagagagaatttaagcaaatttagctcccttcaatcgaaatcaaaaatattttgttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20006449 |
ctgagttttctacatctcagatcattgatgggattgacacacaatagagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttga |
20006350 |
T |
|
| Q |
301 |
agtaaatcaggtctaaataaataaaagcactctttacttttggttgaacatttatattcatattatggaagtttttgattcagtatatttgtttaacagg |
400 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
20006349 |
agtaaatcaggtccaaataaataaaagtactctttacttttggttgaacatttatattcatattatggaagtttctgattcaatatatttgtttaacagg |
20006250 |
T |
|
| Q |
401 |
tcccatattattctgaaagcataaatcataatattacatgttcagaacttttaaaggtattggttccnnnnnnnctttctcctactgatatagtcaagat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20006249 |
tcccatattattctgaaagcataaatcataatattacatgttcataacttttaaaggtattggttcctttttttctttctcctactgatatagtcaagat |
20006150 |
T |
|
| Q |
501 |
ttaatataaatcaccaattcttacatttatgtgnnnnnnngtaggcacaacaccatatgattgataaaccatcatgatgaggacatgaatgaa |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
20006149 |
ttaatataaatcaccaattcttacatttatgtg-ttttttgtaggcacaacaccatatgattgataaaccatcataataaggacatgaatgaa |
20006058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 20007846 - 20007672
Alignment:
| Q |
9 |
gtatgggttttggaactgttaaaatcaattcaaaatatgcaaaggatggaagnnnnnnnn-ctttactctaggatgtactcgtgcaagaagctatgtgag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20007846 |
gtatgggttttggaactgttaaaatcaattcaaaaaatgcaaaggatggaaaaaaaaaatactttactctaggatgtacttgtgcaagaagctatgtgag |
20007747 |
T |
|
| Q |
108 |
taactcaaagaaccttttgaaaccaaatcccatcacaagagcacaatgtatggctagagtaaatatgtgtcagtc |
182 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20007746 |
taacacaaagaaccttttgaaaccaaatcctatcataagagcacaatgtatggctagagtaaatatgtgtcagtc |
20007672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 201 - 593
Target Start/End: Original strand, 14123917 - 14124307
Alignment:
| Q |
201 |
ctgagttttctacatctcagatcattgatgggattggcacacaagagagaatttaagcaaatttagctcccttcaatcgaaatcaaaaatattttgttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14123917 |
ctgagttttctacatctcagatcattgatgggattgacacacaatagagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttga |
14124016 |
T |
|
| Q |
301 |
agtaaatcaggtctaaataaataaaagcactctttacttttggttgaacatttatattcatattatggaagtttttgattcagtatatttgtttaacagg |
400 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
14124017 |
agtaaatcaggtccaaataaataaaagtactctttactttttgttgaacatttatattcatattatggaagtttctgattcaatatatttgtttaacagg |
14124116 |
T |
|
| Q |
401 |
tcccatattattctgaaagcataaatcataatattacatgttcagaacttttaaaggtattggttccnnnnnnnctttctcctactgatatagtcaagat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14124117 |
tcccatattattctgaaagcataaatcataatattacatgttcataacttttaaaggtattggttcctttttttctttctcctactgatatagtcaagat |
14124216 |
T |
|
| Q |
501 |
ttaatataaatcaccaattcttacatttatgtgnnnnnnngtaggcacaacaccatatgattgataaaccatcatgatgaggacatgaatgaa |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
14124217 |
ttaatataaatcaccaattcttacatttatgtg--tttttgtaggcacaacaccatatgattgataaaccatcataataaggacatgaatgaa |
14124307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 14122522 - 14122694
Alignment:
| Q |
9 |
gtatgggttttggaactgttaaaatcaattcaaaatatgcaaaggatggaagnnnnnnnnctttactctaggatgtactcgtgcaagaagctatgtgagt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14122522 |
gtatgggttttggaactgttaaaatcaattcaaaaaatgcaaaggatggaa-aaaaaatactttactctaggatgtacttgtgcaagaagctatgtgagt |
14122620 |
T |
|
| Q |
109 |
aactcaaagaaccttttgaaaccaaatcccatcacaagagcacaatgtatggctagagtaaatatgtgtcagtc |
182 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14122621 |
aacacaaagaaccttttgaaaccaaatcctatcataagagcacaatgtatggctagagtaaatatgtgtcagtc |
14122694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 385 - 759
Target Start/End: Complemental strand, 53324485 - 53324108
Alignment:
| Q |
385 |
atatttgtttaacaggtcccatattattctgaaagcataaatcataatattacatgttcagaacttttaaaggtattggttccnnnnnnnctttctc--- |
481 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
53324485 |
atatttgtttaacaggttccatattattctcaaagcataaatcataatattacatgttcagaacttttagaggtattggttcctttttctctctctctct |
53324386 |
T |
|
| Q |
482 |
---ctactgatatagtcaagatttaatataaatcaccaattcttacatttatgtgnnnnnnngtaggcacaacaccatatgattgataaaccatcatgat |
578 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
53324385 |
ctcctactgatatagtcaagatgtaatataaatcaccaattcttacatttgtgt---tttttgtaggcacaacaccatatgattgataaaccatcataat |
53324289 |
T |
|
| Q |
579 |
gaggacatgaatgaaccacttctttgggagatgaaagttgaagatgattgttgcagacttgcaggaactatttacatatattttgtattaagtgattatg |
678 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||| |||| ||| |
|
|
| T |
53324288 |
gaggacatgaatgaaccacttctttggaagacgagagttgaagatgattgttgcagactttcagaaactatttaaatatattttgtgttaattgatcatg |
53324189 |
T |
|
| Q |
679 |
acattggattttacatattaggatggcaattggagtctgcaccttgtactgttattgaatgttgaagcaactatttagctt |
759 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53324188 |
acgctggattttacatattaggatggcaattggaatctacaccttgtactgttattgaatgttgaagcaactgtttagctt |
53324108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 53325336 - 53325164
Alignment:
| Q |
9 |
gtatgggttttggaactgttaaaatcaattcaaaatatgcaaaggatggaagnnnnnnnnctttactctaggatgtactcgtgcaagaagctatgtgagt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53325336 |
gtatgggttttggaactgttaaaatcaattcaaaaaatgcaaaggatggaa-aaaaaatactttactctaggatgtacttgtgcaagaagctatgtgagt |
53325238 |
T |
|
| Q |
109 |
aactcaaagaaccttttgaaaccaaatcccatcacaagagcacaatgtatggctagagtaaatatgtgtcagtc |
182 |
Q |
| |
|
||||||||||||||||||| ||||||||| | || ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53325237 |
aactcaaagaaccttttgagaccaaatcctaccataagagcacaatgtatagctagagtaaatatgtgtcagtc |
53325164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 758 - 880
Target Start/End: Complemental strand, 53324057 - 53323936
Alignment:
| Q |
758 |
ttggtgttgaaacaatttagcttcagtctcacttttgttctt-gcacattttggaggtttatatttatgtctctttgagtggacatgttgttattttgtg |
856 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | || |
|
|
| T |
53324057 |
ttggtgttgaaacaatttagcttcagtgtcacttttgttctttgcacattttggaggtttatatttatgtctctttcagtggacatgttgtta--ctctg |
53323960 |
T |
|
| Q |
857 |
atgaggctcttgattgtgttatgt |
880 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
53323959 |
atgaggctcttgattgtgttatgt |
53323936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 881 - 939
Target Start/End: Complemental strand, 53323913 - 53323854
Alignment:
| Q |
881 |
tgttatgtatttgttatatactttagcagtacataaacatgtcttgc-atttagagatca |
939 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
53323913 |
tgttatgtatttgttatatactttagcagtacaaaaacatgtcttgcaatttagagatca |
53323854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 542 - 652
Target Start/End: Complemental strand, 9283747 - 9283634
Alignment:
| Q |
542 |
taggcacaacaccatatgattgataaaccatcatgat--gag-gacatgaatgaaccacttctttgggagatgaaagttgaagatgattgttgcagactt |
638 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| || ||| ||||||||||||||||| |||||||| |||| ||||||| ||||| ||||||||||| |
|
|
| T |
9283747 |
taggcacaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccactgctttgggatatgagagttgaaaatgatagttgcagactt |
9283648 |
T |
|
| Q |
639 |
gcaggaactattta |
652 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
9283647 |
gcaacaactattta |
9283634 |
T |
|
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Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 8532316 - 8532270
Alignment:
| Q |
260 |
aatttagctcccttcaatcgaaatcaaaaatattttgttgaagtaaa |
306 |
Q |
| |
|
||||||||||||||||||| ||||||| || |||||| ||||||||| |
|
|
| T |
8532316 |
aatttagctcccttcaatccaaatcaagaacattttgctgaagtaaa |
8532270 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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