View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484R-Insertion-16 (Length: 950)
Name: NF1484R-Insertion-16
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484R-Insertion-16 |
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Alignment Details
Target: chr4 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 8 - 777
Target Start/End: Original strand, 40613579 - 40614349
Alignment:
| Q |
8 |
actaacctgttaacaaaaacggtttatgcactaaggaacccttttcaccttcaaaatcttgactcttttgtggctcttcctcttcctccttttcatagtt |
107 |
Q |
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| T |
40613579 |
actaacctgttaacaaaaacggtttatgcactaaggaacccttttcaccttcaaaatcttgactcttttgtggctcttcctcttcctccttttcatagtt |
40613678 |
T |
|
| Q |
108 |
aaccacatcttcatataaagtgggaagtttctttatctttctatcttcatcaggagaaaccaattcagaagctctttgaataagatcaccaaaggtttga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40613679 |
aaccacatcttcatataaagtgggaagtttctttatcttcctatcttcatcaggagaaaccaattcagaagctctttgaataagatcaccaaaggtttga |
40613778 |
T |
|
| Q |
208 |
aacatcttatcaagttgaagaaggtgaagagcttctttactctgttgatgactttgaaaaagaaccatagtgttcttgagttgttgaagaacatagaaaa |
307 |
Q |
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| T |
40613779 |
aacatcttatcaagttgaagaaggtgaagagcttcttttctctgttgatgactttgaaaaagaaccatagtgttcttgagttgttggagaacatagaaaa |
40613878 |
T |
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| Q |
308 |
gatcttcaggaacatcttgtggtttttc-ttgtactgcaatttcttggagtttcgtttgttccacgttgttaagagtgtcaagcgttgacgttgcagctc |
406 |
Q |
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| T |
40613879 |
gatcttcaggaacatcttgtggtttttctttgtactgcaatttcttggagtttcgtttgttccacgttgttaagagtgtcaagcgttgacgttgcagctt |
40613978 |
T |
|
| Q |
407 |
ctatttcttctatagaaggtctaggtggaagtgaagaatagatttgtgtgatttcttgtattgtgtctagtaaggcacgtgaaggtggttgtggataagg |
506 |
Q |
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| T |
40613979 |
ctatttcttctatagaaggtctaggtggaagtgaagaatagatttgtgtgatttcttgtattgtgtctagaaaggcacgtgaaggtggttgtggataagg |
40614078 |
T |
|
| Q |
507 |
tgtggtggccatgaatattgatatgatggaagaaggaagaagagtttggagtggctatgtactaatagttgtagaaattaatggaacagggttgggagaa |
606 |
Q |
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| T |
40614079 |
tgtggtggccatgaatattgatatggtggaagaaggaagaagagtttggagtggctatgtacaaatagttgtagaaattaatggaacagggttgggagaa |
40614178 |
T |
|
| Q |
607 |
ag-aacaaagtggagatgnnnnnnnggacagaaattttgttagtgttgtgaaaaacagagaaatggttgctatgtacaacctaaattttcttatgatttg |
705 |
Q |
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| T |
40614179 |
agaaacaaagtggaaatgaaaaaaaggacagaaattttgtgagtgttgtgaaaaacagagaaatggttgctatgtac-acctaaattttctgatgatttg |
40614277 |
T |
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| Q |
706 |
gtttggtccttgtcttctttactttgtttaagacaagactaagctaacctcgtacagttgagctttattata |
777 |
Q |
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| T |
40614278 |
gtttggtccttgtcttctttactttgtttaagacaagactaagctaacctcgtacagttgagctttattata |
40614349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 788 - 834
Target Start/End: Original strand, 38236310 - 38236356
Alignment:
| Q |
788 |
actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaa |
834 |
Q |
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| T |
38236310 |
actagatcgtctacccgtgcggcagcacgggtcatatatagctaaaa |
38236356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 826
Target Start/End: Complemental strand, 16367919 - 16367878
Alignment:
| Q |
785 |
gaaactagatcgtctacccgtgcgaacgcacgggtcatatat |
826 |
Q |
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| T |
16367919 |
gaaactagatcgtctacccgtgctgccgcacgggtcatatat |
16367878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 788 - 825
Target Start/End: Complemental strand, 7853728 - 7853691
Alignment:
| Q |
788 |
actagatcgtctacccgtgcgaacgcacgggtcatata |
825 |
Q |
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| T |
7853728 |
actagatcgtctacccgtgctaccgcacgggtcatata |
7853691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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