View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484R-Insertion-2 (Length: 134)

Name: NF1484R-Insertion-2
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484R-Insertion-2
NF1484R-Insertion-2
[»] chr1 (18 HSPs)
chr1 (9-134)||(9317824-9317949)
chr1 (9-120)||(9320353-9320464)
chr1 (9-120)||(9350670-9350781)
chr1 (9-98)||(9254598-9254687)
chr1 (8-99)||(9000113-9000204)
chr1 (13-87)||(8964967-8965041)
chr1 (9-87)||(9057012-9057090)
chr1 (9-87)||(9082120-9082198)
chr1 (13-87)||(9104572-9104646)
chr1 (9-99)||(9142440-9142530)
chr1 (8-116)||(9453373-9453484)
chr1 (9-53)||(8921147-8921191)
chr1 (9-60)||(8942468-8942519)
chr1 (9-87)||(8873649-8873727)
chr1 (9-87)||(9096390-9096468)
chr1 (9-52)||(8956474-8956517)
chr1 (69-116)||(9400146-9400193)
chr1 (69-116)||(9485738-9485785)
[»] chr3 (1 HSPs)
chr3 (9-134)||(9160043-9160168)
[»] chr6 (1 HSPs)
chr6 (9-92)||(15926772-15926855)
[»] chr4 (1 HSPs)
chr4 (10-53)||(27692878-27692921)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 2e-65; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 9317949 - 9317824
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9317949 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 9317850  T
Q  109 cctttataaacacaaccgaaccctcc 134  Q
    ||||||||||||||||||||||||||    
T  9317849 cctttataaacacaaccgaaccctcc 9317824  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 9320353 - 9320464
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 108  Q
    |||||||||||||||||| |||||| |||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||   ||  |||    
T  9320353 tattcttcctatggttgcgacttcactaatgaaatcttgtccattacccttagatttacccaacatctttatggccacaaatggcccgctgcatagcttt 9320452  T
Q  109 cctttataaaca 120  Q
    ||||||||||||    
T  9320453 cctttataaaca 9320464  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 9350670 - 9350781
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 108  Q
    |||||||||||||||||| |||||| |||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||   ||  |||    
T  9350670 tattcttcctatggttgcgacttcactaatgaaatcttgtccattacccttagatttacccaacatctttatggccacaaatggcccgctgcatagcttt 9350769  T
Q  109 cctttataaaca 120  Q
    ||||||||||||    
T  9350770 cctttataaaca 9350781  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 9254687 - 9254598
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccact 98  Q
    |||||||||||||||||| |||||| |||| || || || |||||||||||||| ||| |||||||||||||||| |||||||| |||||    
T  9254687 tattcttcctatggttgcgacttcactaatgaaatcatgtccattacccttagatttaaccaacatctttatggcaacaaatggcccact 9254598  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 9000113 - 9000204
Alignment:
Q  8 atattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccacta 99  Q
    |||||||||| |||||||  |||||| ||||||| |||| ||||||||| || || ||||||||||||||||| |||||| | |||||||||    
T  9000113 atattcttccgatggttgagacttcactaataaaatctttcccattacctttcgatttacccaacatctttattgccacacaaggaccacta 9000204  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 8964967 - 8965041
Alignment:
Q  13 cttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 87  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| || || ||||| |||||||| || ||||||    
T  8964967 cttccaatggttgctacttcattaataaagtcctgcccattaccttttgatttacctaacatcttgattgccaca 8965041  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 9057012 - 9057090
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 87  Q
    ||||||||| || ||||  |||||||| |||||||||||||||||||| || || || |||||||||||||| ||||||    
T  9057012 tattcttccaatagttgtgacttcattgataaagtcttgcccattacctttggacttgcccaacatctttattgccaca 9057090  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 9082198 - 9082120
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 87  Q
    ||||||||| || ||||  |||||||| |||||||||||||||||||| || || |||||||||||||| || ||||||    
T  9082198 tattcttccaatagttgtgacttcattgataaagtcttgcccattaccttttgacttacccaacatcttgattgccaca 9082120  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 9104646 - 9104572
Alignment:
Q  13 cttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 87  Q
    ||||| |||||||| |||||| ||||||||||||| |||||||| || || |||||||||||||| || ||||||    
T  9104646 cttccaatggttgctacttcactaataaagtcttgtccattacctttcgacttacccaacatcttgattgccaca 9104572  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 9142530 - 9142440
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccacta 99  Q
    ||||||||| |||||   ||||||| ||||||| |||||||||||||| || || ||||||| |||||| || |||||| | |||||||||    
T  9142530 tattcttccgatggtcataacttcactaataaaatcttgcccattaccttttgacttacccagcatcttgattgccacacaaggaccacta 9142440  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 9453484 - 9453373
Alignment:
Q  8 atattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacc---caacatctttatggccacaaatggaccactaattaa 104  Q
    ||||||| |||||||||||||||||| | || || ||||||||||||   || || |||     ||||||||||||||| | |||||||||||| ||||     
T  9453484 atattctccctatggttgcaacttcacttatgaaatcttgcccattagtttttgatttaattttcaacatctttatggctataaatggaccacttattag 9453385  T
Q  105 atttcctttata 116  Q
    ||||||||||||    
T  9453384 atttcctttata 9453373  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 8921147 - 8921191
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccatt 53  Q
    |||| ||||||||||||||||||||||||| || |||||||||||    
T  8921147 tatttttcctatggttgcaacttcattaatgaaatcttgcccatt 8921191  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 8942468 - 8942519
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattaccctta 60  Q
    |||||||||||| |||||||||||||| || || ||||||||||| ||||||    
T  8942468 tattcttcctattgttgcaacttcattgatgaaatcttgcccatttccctta 8942519  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 8873727 - 8873649
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 87  Q
    |||||| || |||||||| |||||| | ||||||||| |||| ||||| || || |||||||||||||| || ||||||    
T  8873727 tattctcccaatggttgctacttcacttataaagtctcgcccgttaccttttgatttacccaacatcttgattgccaca 8873649  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 9096468 - 9096390
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 87  Q
    ||||||||| || ||||  |||||||| ||||| |||||||||||||| || || |||||||||| ||| || ||||||    
T  9096468 tattcttccaatagttgtgacttcatttataaaatcttgcccattaccttttgaattacccaacaacttgattgccaca 9096390  T

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Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 8956474 - 8956517
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccat 52  Q
    |||| ||||||||||||||||||||||||| || ||||| ||||    
T  8956474 tatttttcctatggttgcaacttcattaatgaaatcttgtccat 8956517  T

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Target: chr1; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 9400146 - 9400193
Alignment:
Q  69 caacatctttatggccacaaatggaccactaattaaatttcctttata 116  Q
    ||||||||||||||| |||||||| ||||| |||| ||||||| ||||    
T  9400146 caacatctttatggctacaaatggcccacttattagatttcctctata 9400193  T

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Target: chr1; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 9485785 - 9485738
Alignment:
Q  69 caacatctttatggccacaaatggaccactaattaaatttcctttata 116  Q
    ||||||||||||||| |||||||| ||||| |||| ||||||| ||||    
T  9485785 caacatctttatggctacaaatggcccacttattagatttcctctata 9485738  T

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Target: chr3 (Bit Score: 70; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 9160043 - 9160168
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 108  Q
    |||||||||||| |||||||| ||| |||| || ||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||  |||| |||    
T  9160043 tattcttcctatagttgcaacctcactaatgaaatcttgtccattacccttagacttacccaacatctttatggcaacaaatgcaccacttcttaacttt 9160142  T
Q  109 cctttataaacacaaccgaaccctcc 134  Q
    |||||||||||| |||| ||||||||    
T  9160143 cctttataaacagaaccaaaccctcc 9160168  T

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Target: chr6 (Bit Score: 60; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 15926855 - 15926772
Alignment:
Q  9 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatgg 92  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||| | |||||| |||||||||||||||||||||||||||||    
T  15926855 tattcttcctatggttgccacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatgg 15926772  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 27692878 - 27692921
Alignment:
Q  10 attcttcctatggttgcaacttcattaataaagtcttgcccatt 53  Q
    |||||||| ||||||||||||||||| || |||||||| |||||    
T  27692878 attcttccaatggttgcaacttcattgatgaagtcttgtccatt 27692921  T

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