View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484R-Insertion-3 (Length: 137)
Name: NF1484R-Insertion-3
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484R-Insertion-3 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 6e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 18345634 - 18345503
Alignment:
| Q |
6 |
tcataaaacccaaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaaacaaccacct |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18345634 |
tcataaaacccaaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaaacaaccacct |
18345535 |
T |
|
| Q |
106 |
cttcaacatctacgtccatgcagatcccacca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18345534 |
cttcaacatctacgtccatgcagatcccacca |
18345503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 18340466 - 18340345
Alignment:
| Q |
17 |
aaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttat-gggaaaaattcttcgttggaaacaaccacctcttcaacatc |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
18340466 |
aaacctaaaatcgctttcctcttcctcaccaacaccaacctcacctttgctcctttatggggaaaaattcttcaccggaaacaaccatctcttcaatata |
18340367 |
T |
|
| Q |
116 |
tacgtccatgcagatcccacca |
137 |
Q |
| |
|
||| |||||||||| ||||||| |
|
|
| T |
18340366 |
tacatccatgcagaccccacca |
18340345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 18303237 - 18303349
Alignment:
| Q |
17 |
aaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaaacaaccacctcttcaacatct |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| | ||| ||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
18303237 |
aaacccaaaatcgccttcctcttcctcacaaacaccaacttcacctttgctcctttgtgggaaatattctttactggaaacaaccacctcttcaacatct |
18303336 |
T |
|
| Q |
117 |
acgtccatgcaga |
129 |
Q |
| |
|
|| |||| ||||| |
|
|
| T |
18303337 |
acatccacgcaga |
18303349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University