View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484R-Insertion-4 (Length: 166)
Name: NF1484R-Insertion-4
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484R-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 6e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 4109323 - 4109481
Alignment:
| Q |
8 |
atcatcttcacacgttcctcttgctgcatgtgtcatgtcatgaagaagcttctctccaccataggtgttaatcccaccgtcatcgaattagacgacaacg |
107 |
Q |
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| T |
4109323 |
atcatcttcacacgttcctcttgctgcatgtgtcatgtcatgaagaagcttctctccaccataggtgttaatcccaccgtcatcgaattagacgacaacg |
4109422 |
T |
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| Q |
108 |
agatcgcctctttgtcgtctgacgatgacgatgatcttgcttccgtcctccgtaaccgc |
166 |
Q |
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| T |
4109423 |
agatcgcctctttgtcgtctgacgatgacgatgatcttgcttccgtcctccgtaaccgc |
4109481 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 48154130 - 48154041
Alignment:
| Q |
23 |
tcctcttgctgcatgtgtcatgtcatgaagaagcttctctccaccataggtgttaatcccaccgtcatcgaattagacgacaacgagatc |
112 |
Q |
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| T |
48154130 |
tcctcatgctgcatgtgccatgtcatgaggaatctcctcttcaccatcggcgttcatcccaccgttatccaattggatgacaacgagatc |
48154041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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