View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484R-Insertion-7 (Length: 266)
Name: NF1484R-Insertion-7
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484R-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 40820087 - 40820269
Alignment:
| Q |
9 |
aatatcatactctactgcattatcacacatcacacatgtcatttggaaaaggacacctccatggtggaagttgaatctggtgggaaggcaaaactggagt |
108 |
Q |
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| T |
40820087 |
aatatcatactctactgcattatcacacatcacacatgtcatttggaaaagaacacctccatggtggaggttgaatctggtgggaaggcaaaactggagt |
40820186 |
T |
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| Q |
109 |
aaacggcaacaaaaatgtttgatttttggaggtaatggcaacgatcaagcctcattcgagcaatagaagtttctatctgtata |
191 |
Q |
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| T |
40820187 |
aaacggcaacaaaaatgtttgatttttggaggtaatggcaacgatcaagcctcattcgagcaacagaagtttctatctgtata |
40820269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 40820312 - 40820344
Alignment:
| Q |
234 |
cctaactcctaagatatagaaacgagttaatga |
266 |
Q |
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| T |
40820312 |
cctaactcctaagagatagaaacgagttaatga |
40820344 |
T |
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