View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484R-Insertion-8 (Length: 288)

Name: NF1484R-Insertion-8
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484R-Insertion-8
NF1484R-Insertion-8
[»] chr3 (16 HSPs)
chr3 (9-288)||(24840209-24840488)
chr3 (9-276)||(19943335-19943602)
chr3 (9-285)||(26651640-26651916)
chr3 (23-288)||(19818161-19818426)
chr3 (23-140)||(20005234-20005351)
chr3 (23-233)||(19853171-19853381)
chr3 (23-288)||(19811884-19812149)
chr3 (23-228)||(19989186-19989391)
chr3 (23-228)||(26646674-26646879)
chr3 (9-239)||(19857723-19857954)
chr3 (23-177)||(19955790-19955944)
chr3 (23-204)||(19950812-19950993)
chr3 (23-114)||(19838162-19838253)
chr3 (35-204)||(19848675-19848844)
chr3 (26-117)||(20045898-20045989)
chr3 (26-108)||(20016451-20016533)
[»] chr5 (4 HSPs)
chr5 (23-288)||(9814641-9814906)
chr5 (62-228)||(26355215-26355381)
chr5 (24-166)||(38435381-38435523)
chr5 (220-288)||(2319480-2319548)
[»] chr1 (1 HSPs)
chr1 (40-285)||(1716818-1717066)
[»] chr6 (1 HSPs)
chr6 (10-178)||(34408323-34408492)
[»] chr7 (3 HSPs)
chr7 (220-288)||(48259460-48259528)
chr7 (220-288)||(45887493-45887561)
chr7 (220-288)||(47331719-47331787)
[»] chr4 (2 HSPs)
chr4 (220-288)||(55864472-55864540)
chr4 (19-69)||(6397983-6398033)
[»] chr8 (1 HSPs)
chr8 (50-118)||(22652364-22652432)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 24840209 - 24840488
Alignment:
Q  9 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840209 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 24840308  T
Q  109 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840309 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttg 24840408  T
Q  209 agctgaagttcatcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 288  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24840409 agctgaagttcatcaacccacttaatccatttctcatgtgggtagtgccacccattgaaatggattttcaaaggccactc 24840488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 19943602 - 19943335
Alignment:
Q  9 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 108  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19943602 caaagagagagtatccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctc 19943503  T
Q  109 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttg 208  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| || ||||||||||||    
T  19943502 aacaatcccacaaaccaagtcttgatttttaattatgcagctcttaatactcattataggttcaaagattctagcttttttccatactgattcatatttg 19943403  T
Q  209 agctgaagttcatcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggatttt 276  Q
     ||| |||||| ||||||||||||| |||||||||||| ||| |||||||||||||||| | ||||||    
T  19943402 ggcttaagttcgtcaacccacttaacccatttctcttgaggggagtgccacccattgaagttgatttt 19943335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 26651916 - 26651640
Alignment:
Q  9 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| || |||   ||||| |||| ||||||||||||    
T  26651916 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaagcaatttgtctcactacaccatttctc 26651817  T
Q  109 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttg 208  Q
    |  || |||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| |||    
T  26651816 agaaatcccataaaccaagtcttgatttttcattacgcggctcttagtactcattataggttcaaagatgccggcttttttccacactgattcatacttg 26651717  T
Q  209 agctgaagttcatcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggcca 285  Q
     ||| ||||| |||||||||||||| |||||||   ||||||||  ||||||  |||||| ||||||||||||||||    
T  26651716 ggcttaagttgatcaacccacttaacccatttcgtgtgtgggtaacgccaccagttgaaacggattttcaaaggcca 26651640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 19818426 - 19818161
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 122  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||| |||| || |||||||| || ||||||||||||||||||||||||||| | |    
T  19818426 ccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaaccccaaata 19818327  T
Q  123 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 222  Q
     ||||| ||| ||||||   ||| |||  ||||||||||| ||||  |||||||| | |||||| |||||||| |||||||| ||  | | |||||||||    
T  19818326 gcaagttttgatttttatgaatgtagcatttagtactcataatagcatcaaagattctagctttcttccacacagattcatactttggtttaagttcatc 19818227  T
Q  223 aacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 288  Q
    ||||||  ||| ||||||||||||| | | | |||| ||||||||||| ||||||||||| |||||    
T  19818226 aacccaactaaaccatttctcttgttgttggcgccatccattgaaatgtattttcaaaggacactc 19818161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 20005234 - 20005351
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 122  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  20005234 ccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaacaatcccacaaa 20005333  T
Q  123 ccaagtcttggtttttaa 140  Q
    |||||||||| |||||||    
T  20005334 ccaagtcttgatttttaa 20005351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 19853381 - 19853171
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 122  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||| | ||||| || || || || ||| |||||||||| |||||||||||||| |    
T  19853381 ccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgtattggtctcagaacaccatttgtcaacaaccccacata 19853282  T
Q  123 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 222  Q
     ||||| ||| | |||  |||||||||||||||||||||| ||||  |||||||| | | |||| ||||| |  |||||||||||||| ||||||| |||    
T  19853281 acaagttttgatctttctttatgcagctcttagtactcataatagcatcaaagattccaactttcttccatagtgattcatatttgagttgaagttgatc 19853182  T
Q  223 aacccacttaa 233  Q
    |||||||||||    
T  19853181 aacccacttaa 19853171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 19812149 - 19811884
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 122  Q
    ||||||||||| || | ||||||||||||||| ||||||||||||||| |||| || |||||||| || ||||||||||||||||||||||||||| | |    
T  19812149 ccccccaaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaaccccaaaga 19812050  T
Q  123 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 222  Q
     ||| | | | ||||| | ||||   | ||| |||||||| ||||  |||||||| | |||||| |||||||  |||||||| ||  | | ||| |||||    
T  19812049 gcaattttagatttttgagtatgtgacacttggtactcataatagcatcaaagattctagctttcttccacaaagattcatactttggtttaagctcatc 19811950  T
Q  223 aacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 288  Q
    ||||||  ||| ||| |||||||||||||   |||| ||| ||||||||||||||||||| |||||    
T  19811949 aacccatctaacccacttctcttgtgggtgacgccatccactgaaatggattttcaaaggacactc 19811884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 19989391 - 19989186
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 122  Q
    ||||| ||||| || ||||| ||||||||||| ||||| ||||||||| |||| || || |||||||| ||||||||||||||||||||||||||| | |    
T  19989391 ccccctaaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaaata 19989292  T
Q  123 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 222  Q
     |||||  || | |||  ||||||| | ||| |||||||| |||| ||||||||||| | |||| ||||||||  ||||| ||||| | | ||||| |||    
T  19989291 gcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacatattcaaatttgggtttaagttgatc 19989192  T
Q  223 aaccca 228  Q
    ||||||    
T  19989191 aaccca 19989186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 26646879 - 26646674
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 122  Q
    ||||||||||| |||| |||||||||||| || ||||||||||||||   || ||| ||||| ||||| |||||||||||||||||||| |||||| | |    
T  26646879 ccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaactaccccatata 26646780  T
Q  123 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 222  Q
     |||||| || ||||||  ||||| || | | || | |||||| | ||||||||||| | |||| |||||||| | |||||||||||| | ||||| |||    
T  26646779 gcaagtcatgatttttatgtatgcggcaccttgtgcccattattgcttcaaagatgccaactttcttccacactgtttcatatttgagtttaagttgatc 26646680  T
Q  223 aaccca 228  Q
    ||||||    
T  26646679 aaccca 26646674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 19857954 - 19857723
Alignment:
Q  9 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtt-tgtttcacaacaccatttct 107  Q
    ||||||||||||| ||||||||||| |  |||||||| | ||| |||||||||||||||||  |||||||||| || ||  || ||| |||||||||| |    
T  19857954 caaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgt 19857855  T
Q  108 caacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatattt 207  Q
    ||||||||||| ||||||||| | | | ||| ||||||| ||  ||||||||| | ||||  ||||| ||   |||||| |||||||| |||||||||||    
T  19857854 caacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagctttcttccacacagattcatattt 19857755  T
Q  208 gagctgaagttcatcaacccacttaatccatt 239  Q
      | |||||||  ||||||||||||| |||||    
T  19857754 tggttgaagttggtcaacccacttaacccatt 19857723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 19955944 - 19955790
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 122  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| || || ||||| ||||||||||||||||||||||| ||| | |    
T  19955944 ccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtatttgtctcacaacaccatttctcaacaactccaaata 19955845  T
Q  123 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagat 177  Q
     ||||| ||  ||||||   ||| |||  ||||||||||||||||  ||||||||    
T  19955844 gcaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagat 19955790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 19950993 - 19950812
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 122  Q
    ||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||| || || || || |||  |||||||||||||||||||||| |||    
T  19950993 ccccccaaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaatgtattggtctcagtacaccatttctcaacaaccccaaaaa 19950894  T
Q  123 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcata 204  Q
     |||||  || ||||||  |||   ||| ||||||||||| ||||  |||||||| | |||||| |||||||| ||||||||    
T  19950893 gcaagttatgatttttatgtattatgcttttagtactcataatagcatcaaagattccagctttcttccacacagattcata 19950812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 19838253 - 19838162
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaac 114  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| || || || || ||||| |||||||||||||||||    
T  19838253 ccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtattggtctcacagcaccatttctcaacaac 19838162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 19848844 - 19848675
Alignment:
Q  35 atgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggt 134  Q
    |||| ||||||||||||||||||||||||||||||   |||||| ||||| ||||| | |  ||||||||||||||| ||||||   | ||||| ||| |    
T  19848844 atgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatttgtattaggacaccatttctcaactaccccaactagcaagttttgat 19848745  T
Q  135 ttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcata 204  Q
    ||||| ||| | ||| ||||||   ||| ||||  |||||||| | | |||| |||||||| ||||||||    
T  19848744 ttttatttaagtagcacttagtggccataatagcatcaaagattccaactttcttccacacagattcata 19848675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 20045989 - 20045898
Alignment:
Q  26 cccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccc 117  Q
    ||||||||||||| ||||||||| || |||||||  ||||||||  |||| |  || || ||||| ||||||||||||||||| ||||||||    
T  20045989 cccaaaacaatgatatcctccaaggttattgttgtctcaccaaagggaaaaataaatgtatttgtatcacaacaccatttctccacaacccc 20045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 20016451 - 20016533
Alignment:
Q  26 cccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 108  Q
    |||||||| || | |||||||||||||||||| |||||| ||||| ||||||| || || ||||| | | |||||||||||||    
T  20016451 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 20016533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 9814906 - 9814641
Alignment:
Q  23 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 122  Q
    ||||||||||| || |||||||||||| | || || || ||||||||  ||||||| || || || || | ||||||||||||||||||||||||| | |    
T  9814906 ccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtcttacaacaccatttctcaacaaccccatata 9814807  T
Q  123 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 222  Q
     ||||| ||| | ||| ||||||| || ||| |||||||||||||  |||||||| |   |||| |||||||  |||||||| ||  | | ||||| |||    
T  9814806 gcaagttttgatctttcattatgcggcacttggtactcattatagcatcaaagatacctactttcttccacaaagattcatactttggtttaagttgatc 9814707  T
Q  223 aacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 288  Q
    |||||| | |||||||||||||||||||||  |||| ||||||||||||| |||||||||||||||    
T  9814706 aacccaataaatccatttctcttgtgggtaacgccatccattgaaatggaatttcaaaggccactc 9814641  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 26355215 - 26355381
Alignment:
Q  62 tcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactca 161  Q
    ||||||||  ||||||| || || || || ||||||||||||||||| ||||||||  ||| ||||| ||| ||||| | ||||| ||  || |||||||    
T  26355215 tcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatgcggcatttggtactca 26355314  T
Q  162 ttataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatcaaccca 228  Q
    ||||||  ||||| || | |||||| ||||| |||| |||||||||||||| ||||| |||||||||    
T  26355315 ttatagcatcaaaaatcccagctttcttccaaaccggttcatatttgagcttaagttgatcaaccca 26355381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 38435381 - 38435523
Alignment:
Q  24 cccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaac 123  Q
    |||||||||| |||| ||| || ||||||||||||||| |||||| | ||||||| || || || || | ||||||||||||||||||||||| | | |     
T  38435381 cccccaaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtattggtcttacaacaccatttctcaacaaccctaaataa 38435480  T
Q  124 caagtcttggtttttaattatgcagctcttagtactcattata 166  Q
    |||||  || ||||||  |||| |||  |||||||||||||||    
T  38435481 caagttatgatttttatgtatgtagcatttagtactcattata 38435523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 2319480 - 2319548
Alignment:
Q  220 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 288  Q
    ||||||||| | ||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||    
T  2319480 atcaacccaataaatccatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactc 2319548  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 285
Target Start/End: Complemental strand, 1717066 - 1716818
Alignment:
Q  40 atcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggttttta 139  Q
    |||||||||||||||||| |||||||||||  ||||||| || || ||||| |||||||||||||| ||||||| |||| | | ||||| ||| |||||     
T  1717066 atcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgtatttgtctcacaacaccatttttcaacaatcccatataacaagttttgatttttc 1716967  T
Q  140 attat---gcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatcaacccacttaatcc 236  Q
     ||||    |  | ||| || |||||||||| ||||||||||| | |||| |||||||| | ||||| |||||| | |||||||||||||||||||  ||    
T  1716966 tttatacgacgacacttggtgctcattatagcttcaaagatgccaactttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatccc 1716867  T
Q  237 atttctcttgtgggtagtgccacccattgaaatggattttcaaaggcca 285  Q
    ||||    | | | | | |||||||||||||||||||||||||||||||    
T  1716866 attttgagttttgttggcgccacccattgaaatggattttcaaaggcca 1716818  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 34408323 - 34408492
Alignment:
Q  10 aaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcacc-aaatagaaacacgaaggtgtttgtttcacaacaccatttctc 108  Q
    |||| ||||||| ||| ||||||| || ||||| ||||||||||||||| | ||||| ||| | |||||| ||||| ||||| ||||||||| ||| |||    
T  34408323 aaagtgagagtatccctccaaaaccatcacatcatccaaagtgattgttccatcacctaaagaaaaacacaaaggtatttgtctcacaacactattactc 34408422  T
Q  109 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatg 178  Q
     |||| || | || | |||||||| |||||  ||||||| |||| |||||||||||||| || |||||||    
T  34408423 gacaatcctataatcgaagtcttgatttttctttatgcaactctaagtactcattatagctttaaagatg 34408492  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 48259460 - 48259528
Alignment:
Q  220 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 288  Q
    ||||||||| | ||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||    
T  48259460 atcaacccaataaatccatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactc 48259528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 45887493 - 45887561
Alignment:
Q  220 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 288  Q
    ||||||||| | ||| ||||||||||||||||   |||| ||||||||||||| |||||||||||||||    
T  45887493 atcaacccaataaatacatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactc 45887561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 47331787 - 47331719
Alignment:
Q  220 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 288  Q
    ||||||||| | ||||||||||||||||||||   |||| ||||||||||||| |||||||| ||||||    
T  47331787 atcaacccaataaatccatttctcttgtgggtgacgccatccattgaaatggaatttcaaagaccactc 47331719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 55864472 - 55864540
Alignment:
Q  220 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 288  Q
    ||||||||| | ||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||    
T  55864472 atcaacccaataaatccatttctcttgtgggtgacgccaaccattgaaatggaatttcaaaggccactc 55864540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 6397983 - 6398033
Alignment:
Q  19 gtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaa 69  Q
    |||| ||||||| ||||||| |||||||||||| |||||||| ||||||||    
T  6397983 gtagacccccaagacaatgatatcctccaaagttattgttgcctcaccaaa 6398033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 22652364 - 22652432
Alignment:
Q  50 gtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccca 118  Q
    ||||| ||||| ||||||||| ||||||| || | |||||| ||||| |||||||||||||||||||||    
T  22652364 gtgatagttgcctcaccaaatggaaacacaaatgagtttgtctcacagcaccatttctcaacaacccca 22652432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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