View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484R-Insertion-9 (Length: 299)

Name: NF1484R-Insertion-9
Description: NF1484R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484R-Insertion-9
NF1484R-Insertion-9
[»] chr4 (23 HSPs)
chr4 (9-162)||(23408668-23408821)
chr4 (9-158)||(23868733-23868882)
chr4 (9-162)||(23402071-23402224)
chr4 (9-162)||(23453500-23453653)
chr4 (9-158)||(24307224-24307373)
chr4 (9-158)||(23415837-23415986)
chr4 (9-158)||(23885828-23885977)
chr4 (9-158)||(26832736-26832885)
chr4 (9-158)||(26434025-26434174)
chr4 (9-158)||(26435805-26435954)
chr4 (19-158)||(34662179-34662318)
chr4 (202-299)||(23401934-23402031)
chr4 (196-299)||(24307083-24307186)
chr4 (193-299)||(26832595-26832701)
chr4 (202-299)||(23408861-23408958)
chr4 (193-299)||(23416018-23416124)
chr4 (193-299)||(23868592-23868698)
chr4 (193-299)||(26433884-26433990)
chr4 (193-299)||(26435664-26435770)
chr4 (193-299)||(23885687-23885793)
chr4 (199-299)||(34662359-34662459)
chr4 (205-299)||(23453696-23453790)
chr4 (9-69)||(23451860-23451920)
[»] chr1 (4 HSPs)
chr1 (9-161)||(40795767-40795919)
chr1 (19-158)||(41670401-41670540)
chr1 (9-158)||(29391467-29391616)
chr1 (30-66)||(33216558-33216594)
[»] chr7 (2 HSPs)
chr7 (31-158)||(40180420-40180547)
chr7 (30-66)||(47317395-47317431)
[»] chr8 (1 HSPs)
chr8 (33-158)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 23408668 - 23408821
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||    
T  23408668 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatg 23408767  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 162  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  23408768 tctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca 23408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 23868882 - 23868733
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868882 gttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 23868783  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23868782 tctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23868733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 23402224 - 23402071
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  23402224 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatg 23402125  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 162  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23402124 tctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca 23402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 23453500 - 23453653
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  23453500 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatg 23453599  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 162  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23453600 tctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca 23453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 24307373 - 24307224
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307373 gttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 24307274  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    |||||||||||||||||||| || ||||| || |||||||||||||||||    
T  24307273 tctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc 24307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 23415837 - 23415986
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  23415837 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatg 23415936  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23415937 tctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23415986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 23885977 - 23885828
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  23885977 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatg 23885878  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23885877 tctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23885828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 26832885 - 26832736
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  26832885 gttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatg 26832786  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26832785 tctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26832736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 26434174 - 26434025
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  26434174 gttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatg 26434075  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    ||||| |||||||||||||| || ||||| ||||||||||||||||||||    
T  26434074 tctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 26435954 - 26435805
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    ||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  26435954 gttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatg 26435855  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26435854 tctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 34662179 - 34662318
Alignment:
Q  19 gcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaa 118  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||    
T  34662179 gcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaa 34662278  T
Q  119 cttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    |||||||||| || ||||| |||||||||||||| |||||    
T  34662279 cttgtttcagaaccttgaagatgtagatcttgtaggtttc 34662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 23402031 - 23401934
Alignment:
Q  202 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttctt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  23402031 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttctt 23401934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 24307186 - 24307083
Alignment:
Q  196 gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt 295  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  24307186 gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt 24307087  T
Q  296 tctt 299  Q
    ||||    
T  24307086 tctt 24307083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 26832701 - 26832595
Alignment:
Q  193 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 292  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26832701 ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26832602  T
Q  293 gtttctt 299  Q
    |||||||    
T  26832601 gtttctt 26832595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 23408861 - 23408958
Alignment:
Q  202 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttctt 299  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  23408861 gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttctt 23408958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 193 - 299
Target Start/End: Original strand, 23416018 - 23416124
Alignment:
Q  193 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 292  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |    
T  23416018 ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg 23416117  T
Q  293 gtttctt 299  Q
    |||||||    
T  23416118 gtttctt 23416124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 23868698 - 23868592
Alignment:
Q  193 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 292  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23868698 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg 23868599  T
Q  293 gtttctt 299  Q
    |||||||    
T  23868598 gtttctt 23868592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 26433990 - 26433884
Alignment:
Q  193 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 292  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26433990 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26433891  T
Q  293 gtttctt 299  Q
    |||||||    
T  26433890 gtttctt 26433884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 26435770 - 26435664
Alignment:
Q  193 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 292  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26435770 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26435671  T
Q  293 gtttctt 299  Q
    |||||||    
T  26435670 gtttctt 26435664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 23885793 - 23885687
Alignment:
Q  193 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 292  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || |    
T  23885793 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg 23885694  T
Q  293 gtttctt 299  Q
    |||||||    
T  23885693 gtttctt 23885687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 34662359 - 34662459
Alignment:
Q  199 gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct 298  Q
    |||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  34662359 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct 34662458  T
Q  299 t 299  Q
    |    
T  34662459 t 34662459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 23453696 - 23453790
Alignment:
Q  205 ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttctt 299  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||||    
T  23453696 ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttctt 23453790  T

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Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 23451860 - 23451920
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaa 69  Q
    |||||| ||||||||||||||  |||||||||| |||||||| |||||||| |||||||||    
T  23451860 gttgtagcgagcaagtctggagtattcttgagcgagcttctcaaagatatcgttgatgaaa 23451920  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 40795919 - 40795767
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    |||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| ||||||    
T  40795919 gttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatg 40795820  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac 161  Q
    || || ||||| || || || || ||||| |||||||||||||| ||||||||    
T  40795819 tcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac 40795767  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 41670540 - 41670401
Alignment:
Q  19 gcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaa 118  Q
    ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| || ||||    
T  41670540 gcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaa 41670441  T
Q  119 cttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    | || || || || ||||| |||||||||||||| |||||    
T  41670440 cctgcttgagaaccttgaagatgtagatcttgtaggtttc 41670401  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 29391616 - 29391467
Alignment:
Q  9 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 108  Q
    |||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||   || ||||| ||     
T  29391616 gttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctata 29391517  T
Q  109 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 158  Q
    || || ||||| ||||| || || ||||| ||||| ||||| || |||||    
T  29391516 tcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc 29391467  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
Q  30 tgattcttgagcaagcttctcgaagatatcattgatg 66  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33216594 tgattcttgagcaagcttcacgaagatatcattgatg 33216558  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 40180420 - 40180547
Alignment:
Q  31 gattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagta 130  Q
    ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| |||||||| |    
T  40180420 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 40180519  T
Q  131 ctttgaatatgtagatcttgtatgtttc 158  Q
    | ||||| ||||| |||||||| |||||    
T  40180520 ccttgaagatgtatatcttgtaggtttc 40180547  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
Q  30 tgattcttgagcaagcttctcgaagatatcattgatg 66  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47317431 tgattcttgagcaagcttcacgaagatatcattgatg 47317395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
Q  33 ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact 132  Q
    ||||||||| || ||||  |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || ||     
T  29684826 ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc 29684727  T
Q  133 ttgaatatgtagatcttgtatgtttc 158  Q
    |||||||| || |||||||| |||||    
T  29684726 ttgaatatatatatcttgtaggtttc 29684701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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