View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484_high_1 (Length: 652)
Name: NF1484_high_1
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_1 |
 | |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 14720196 - 14720578
Alignment:
| Q |
16 |
atatgttcattcttagccagaagctcaaaattctgaaacaaaagttgaaattcaagaataaaactatctttggcaatgtgcataacatggttagagttgc |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
14720196 |
atatgttcattcttagtcagaagctcaaaattttgaaacaaaagttgaaagtctggaataaaactgtctttggcaatgtgcataacatggttagagttgc |
14720295 |
T |
|
| Q |
116 |
tgaacaaaatgttgctcaactgcaatctgatatggatatcaacggaatcactaactctcttttggaacaacacaaagatgcttaatttcaacttgaaaat |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
14720296 |
tgaacaaaatcttgctcaactgcaatctgatatggataccaatggtatcactaactctcttttggaacaacacaaagatgctcaatttcaacttgaaaat |
14720395 |
T |
|
| Q |
216 |
gctttgctaatataagaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
14720396 |
gctttgctaatataagaagattattggagagagaaatctaaagttgcttggtattcaaatggagacagaaataccaaatattaccatagactaaccaaaa |
14720495 |
T |
|
| Q |
316 |
t-caaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcat |
397 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14720496 |
taaaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcat |
14720578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 652
Target Start/End: Complemental strand, 28187708 - 28187072
Alignment:
| Q |
16 |
atatgttcattcttagccagaagctcaaaattctgaaacaaaagttgaaattcaagaataaaactatctttggcaatgtgcataacatggttagagttgc |
115 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| || || |||||||| ||| || |||||||||| | ||||| |||||||| |||||||||| ||| || |
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|
| T |
28187708 |
atatattcattcttagccagaaactcaaaatcctaaagcaaaagttaaaagtctggaataaaactgtttttggtaatgtgcacaacatggttaaagtggc |
28187609 |
T |
|
| Q |
116 |
tgaacaaaatgttgctcaactgcaatctgatatggatatcaacggaatcactaactctcttttggaacaacacaaagatgcttaatttcaacttgaaaat |
215 |
Q |
| |
|
|||||||| |||| || | ||||||| ||||| | || || |||||| |||| || ||||||||||||| |||||| | ||||||||||||||| |
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|
| T |
28187608 |
agaacaaaaccttgcccatttacaatctgtcatggacacaaatggtatcactgactccctattggaacaacacagagatgcgcagtttcaacttgaaaat |
28187509 |
T |
|
| Q |
216 |
gctttgctaatataagaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaaaa |
315 |
Q |
| |
|
||||| | |||| ||||||| |||||||| |||||||||||| |||||||||||| |||||||| || || |||||||||||||| ||||||||||||| |
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|
| T |
28187508 |
gctttacaaatagaagaagaatattggagggagaaatctaaagttgcttggcatttaaatggagataggaacaccaaatattaccatagactaaccaaaa |
28187409 |
T |
|
| Q |
316 |
tcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaaatcactttaaaaa |
415 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| || || ||||||||||| |
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|
| T |
28187408 |
tcaaaaacacctccaaactcgtaactaccctcatgaatggtgatgatatggtttacaaccctgaggaaatatcaagtctcattactaaccactttaaaaa |
28187309 |
T |
|
| Q |
416 |
tatttttgctactaacaatgttgtgcaggatttgcaagctaatcaattgatatatgactttattccttctctcattacagatgatgtgaacaatctcttg |
515 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| | ||||||| ||||| | |||| |||||| ||||||||| || |||||||||||||| | |
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|
| T |
28187308 |
tatttttgttactaacaatgttgtgcaggatttgcaggttaatcaactgatagaagactccattcctaatctcattactgaagatgtgaacaatcttcta |
28187209 |
T |
|
| Q |
516 |
accaggcttcctactccaactgagattcatcatgatgtgctagcaatgaacaaggatggtgcacctggtccagatggttttggtgcagttttttcccaaa |
615 |
Q |
| |
|
|| || ||||||||| || | ||||| ||||| | ||||||||||||||| ||||| || || || ||||||||||||||||||| ||||||| ||||| |
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|
| T |
28187208 |
acaagacttcctactgcatcagagatccatcaagttgtgctagcaatgaataaggagggagcccccagtccagatggttttggtgcggtttttttccaaa |
28187109 |
T |
|
| Q |
616 |
cttacttggagattgtgaagaatgatgtcatcaatgc |
652 |
Q |
| |
|
||||| ||| |||||||| |||||||| || ||||| |
|
|
| T |
28187108 |
attactgggacattgtgaaaaatgatgtaattaatgc |
28187072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 469 - 648
Target Start/End: Original strand, 14720591 - 14720770
Alignment:
| Q |
469 |
atgactttattccttctctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatgtgctagcaatgaacaa |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14720591 |
atgactttattccttctctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatatgctagcaatgaacaa |
14720690 |
T |
|
| Q |
569 |
ggatggtgcacctggtccagatggttttggtgcagttttttcccaaacttacttggagattgtgaagaatgatgtcatca |
648 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14720691 |
ggatggcgcatctggtccagatggttatggtgcaagtttttcccaaacttactgggagattgtgaagaatgatgtcatca |
14720770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 229 - 451
Target Start/End: Complemental strand, 19217112 - 19216890
Alignment:
| Q |
229 |
aagaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctc |
328 |
Q |
| |
|
||||||| || ||||| || ||||| ||| ||||||||| | | |||| | ||||| ||||| | || ||| |||||| ||||||||| ||| | || |
|
|
| T |
19217112 |
aagaagaatactggagggaaaaatccaaatgtgcttggcacttagatggtgatagaaacaccaagtttttccatagactatccaaaatcagaaactcttc |
19217013 |
T |
|
| Q |
329 |
caaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaaatcactttaaaaatatttttgctact |
428 |
Q |
| |
|
|||||||| | | |||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
19217012 |
taaactcattaacagcctcatgaatggtgatgacatggttactgacccggaggaaatatcaagtctcattacaaatcactttaaaaatattttttccact |
19216913 |
T |
|
| Q |
429 |
aacaatgttgtgcaggatttgca |
451 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
19216912 |
aacaatgttgtgcaggaattgca |
19216890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 12114273 - 12114338
Alignment:
| Q |
274 |
atggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctccaaactcataa |
339 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
12114273 |
atggagacagaaacaccaaatatttccacagactaaccaaaaaaaaacacacctccaaactcataa |
12114338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 451
Target Start/End: Complemental strand, 18924293 - 18924073
Alignment:
| Q |
231 |
gaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctcca |
330 |
Q |
| |
|
||||||| ||||||||| |||||||| | ||||||||| | ||||| | |||||| || ||| | ||| |||||||||||||||||||| ||||| | |
|
|
| T |
18924293 |
gaagatttttggagagaaaaatctaaggtagcttggcatgctaatggggacagaaacactcgatacttccaaagactaaccaaaatcaaaaacacctcta |
18924194 |
T |
|
| Q |
331 |
aactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaaatcactttaaaaatatttttgctactaa |
430 |
Q |
| |
|
||||||| ||| || | | | |||| ||| | ||| || ||| || || ||||||||||| ||| ||||| ||||| |||||||||||| | ||||| |
|
|
| T |
18924193 |
aactcatcacttccattaaggatggggataacatgattactgagccaaatttaatatcaagtcacattacaaaccacttcaaaaatattttttcaactaa |
18924094 |
T |
|
| Q |
431 |
caatgttgtgcaggatttgca |
451 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
18924093 |
tttttctgtgcaggatttgca |
18924073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 16 - 652
Target Start/End: Original strand, 7572518 - 7573156
Alignment:
| Q |
16 |
atatgttcattcttagccagaagctcaaaattctgaaacaaaagttgaaattcaagaataaaactatctttggcaatgtgcataacatggttagagttgc |
115 |
Q |
| |
|
|||||||||||||| ||||||| || |||||| | || ||||| |||||| | |||||||||| | ||||| |||||||| |||||||||| ||| || |
|
|
| T |
7572518 |
atatgttcattctttgccagaaactaaaaattttaaagcaaaaattgaaagtttggaataaaactgtttttggtaatgtgcacaacatggttaaagtggc |
7572617 |
T |
|
| Q |
116 |
tgaacaaaatg--ttgctcaactgcaatctgatatggatatcaacggaatcactaactctcttttggaacaacacaaagatgcttaatttcaacttgaaa |
213 |
Q |
| |
|
||| |||| ||||||| | ||||||| || || | || || |||| | |||| || | ||||||||||||||||| | ||||||||||||| |
|
|
| T |
7572618 |
agaaaaaaaaaccttgctcatttacaatctgtcatagacacaaatggtatcaatgactccctaatagaacaacacaaagatgcgcagtttcaacttgaaa |
7572717 |
T |
|
| Q |
214 |
atgctttgctaatataagaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaa |
313 |
Q |
| |
|
||||||| | | || ||||||| |||||||| |||||||||||| || ||||||||| |||||||| ||||| |||||||||||||| ||||| ||||| |
|
|
| T |
7572718 |
atgctttacaattagaagaagaatattggagggagaaatctaaagttacttggcatttaaatggagatagaaacaccaaatattaccatagactgaccaa |
7572817 |
T |
|
| Q |
314 |
aatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaaatcactttaaa |
413 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||| ||||||||||| ||| |
|
|
| T |
7572818 |
aatcaaaaacacctccaaactgataactaccctcatgaatgatgatgatatagtttatgaccctgaggaaatatcaagtctcattacaaatcacttcaaa |
7572917 |
T |
|
| Q |
414 |
aatatttttgctactaacaatgttgtgcaggatttgcaagctaatcaattgatatatgactttattccttctctcattacagatgatgtgaacaatctct |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | |||||| |||||| | |||| |||||| ||||||||| || ||||| || ||||| |
|
|
| T |
7572918 |
aatatttttgctactaacaatgttgtgcaggatttgtaggttaatcatttgatagaagactccattcctaatctcattactgaagatgtaaataatctac |
7573017 |
T |
|
| Q |
514 |
tgaccaggcttcctactccaactgagattcatcatgatgtgctagcaatgaacaaggatggtgcacctggtccagatggttttggtgcagttttttccca |
613 |
Q |
| |
|
|||| || ||||||||| || | ||||||||||| | ||||||| ||||||||||||| || || || |||||||||||||||||||| ||||||| ||| |
|
|
| T |
7573018 |
tgacaagacttcctacttcatcagagattcatcaagctgtgctatcaatgaacaaggagggagctccaggtccagatggttttggtgcggtttttttcca |
7573117 |
T |
|
| Q |
614 |
aacttacttggagattgtgaagaatgatgtcatcaatgc |
652 |
Q |
| |
|
|| ||| | ||| |||||| | |||||||| || ||||| |
|
|
| T |
7573118 |
aagttattgggacattgtggaaaatgatgtaattaatgc |
7573156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 229 - 432
Target Start/End: Original strand, 10009964 - 10010167
Alignment:
| Q |
229 |
aagaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctc |
328 |
Q |
| |
|
||||||| |||||||| |||||||| ||| |||||||||| ||| | |||| ||||||||||||| | |||| |||| ||||||||||||| || || |
|
|
| T |
10009964 |
aagaagaatattggagggagaaatccaaagttgcttggcactcagaaggagatcgaaataccaaatactttcacaaactatccaaaatcaaaaacacttc |
10010063 |
T |
|
| Q |
329 |
caaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaaatcactttaaaaatatttttgctact |
428 |
Q |
| |
|
||||||||||| || |||||||| ||||||| | ||||||| ||| || | ||||||||||||| ||||||| |||| ||||||||||||||| || || |
|
|
| T |
10010064 |
caaactcataaatagcctcatgattggtgataacatggtttctgatccacaacaaatatcaagtcacatcacagatcattttaaaaatattttttcttct |
10010163 |
T |
|
| Q |
429 |
aaca |
432 |
Q |
| |
|
|||| |
|
|
| T |
10010164 |
aaca |
10010167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 631
Target Start/End: Complemental strand, 8787916 - 8787872
Alignment:
| Q |
587 |
agatggttttggtgcagttttttcccaaacttacttggagattgt |
631 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||| ||||||||| |
|
|
| T |
8787916 |
agatggttttggtgcagtattttaccaaacatactgggagattgt |
8787872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 300 - 451
Target Start/End: Original strand, 22562032 - 22562183
Alignment:
| Q |
300 |
cacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatca |
399 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||||| || |||||||||||||||| | ||| || ||| | || |||| ||||||| ||||| |
|
|
| T |
22562032 |
cacagactggccaaaatcaaaaacacatccaaactcataaatagcctcatgaatggtgataacatgattactgatctagaggaaatttcaagtcacatca |
22562131 |
T |
|
| Q |
400 |
caaatcactttaaaaatatttttgctactaacaatgttgtgcaggatttgca |
451 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
22562132 |
caaatcacttcaaaaatatttttgctactaacattgttgtgaagaatttgca |
22562183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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