View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484_high_17 (Length: 427)
Name: NF1484_high_17
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 27230140 - 27229718
Alignment:
| Q |
1 |
ttatgatcttgttgccttaatgttaatttatatcatttatttatttgagaggatcatttatctttcttaactacctgaatactttgaagatttaaatccg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27230140 |
ttatgatcttgttgcctta--gttaatttatatcatttatttatttgagaggatcatttatcttt--taactacctgaatactttgaagatttaaatccg |
27230045 |
T |
|
| Q |
101 |
aggaatttatttcttaggacaaggcttcaatggatgaacannnnnnn-acatgaagtggtttgatagagcttggaagtata---------------gttc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27230044 |
aggaatttatttcttaggacaaggcttcaatggatgaacattttttttacatgaagtggtttgatagagcttggaagtatatgtaatctaacattagttc |
27229945 |
T |
|
| Q |
185 |
aattgatagagcttggtttgggattagaagcttcaaatagaccttttatttgggttattagggaaggaaatcaattacatgaattggagaagtggatcaa |
284 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27229944 |
aattgatagagcttggtttgggatttgaagcttcaaatagaccttttatttgggttattagggaaggaaatcaattacatgaattggagaagtggatcaa |
27229845 |
T |
|
| Q |
285 |
ggaagaggagttttttcatctttctcttcattttgaggtggcaagaagtgtttgtttaaagctaatgacgtggatggaatgtagttacataatccctcca |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
27229844 |
ggaagaggagttttttcatctttctcttcattttgaggtggcaagaagtgtttgtttaaagctaataatgtggatggaatgtagttacataatccctcca |
27229745 |
T |
|
| Q |
385 |
actctttttgttcattgagggagtttg |
411 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27229744 |
actctttttgttcattgagggagtttg |
27229718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 295 - 411
Target Start/End: Complemental strand, 27269566 - 27269450
Alignment:
| Q |
295 |
ttttttcatctttctcttcattttgaggtggcaagaagtgtttgtttaaagctaatgacgtggatggaatgtagttacataatccctccaactctttttg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27269566 |
ttttttcatctttctcttcattttgaggtggcaagaagtgtttggttaaagctaatgacgtggatggaatgtagttacataatccctccaactctttttg |
27269467 |
T |
|
| Q |
395 |
ttcattgagggagtttg |
411 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27269466 |
ttcattgagggagtttg |
27269450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 27269852 - 27269784
Alignment:
| Q |
295 |
ttttttcatctttctcttcattttgaggtggcaagaagtgtttgtttaaagctaatgacgtggatggaa |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27269852 |
ttttttcatctttctcttcattttgaggtggcaagaagtgtttggttaaagctaatgacgtggatggaa |
27269784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 27224401 - 27224346
Alignment:
| Q |
184 |
caattgatagagcttggtttgggattagaagcttcaaatagaccttttatttgggt |
239 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
27224401 |
caattgatagaatttggtttgggattagaagctaccaatagaccgtttatttgggt |
27224346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 41536931 - 41537001
Alignment:
| Q |
187 |
ttgatagagcttggtttgggattagaagcttcaaatagaccttttatttgggttattagggaaggaaatca |
257 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||| ||||| |||||||||||| | || ||||||||||| |
|
|
| T |
41536931 |
ttgatagagcttggtttagcattagaagcaacaaaaagaccctttatttgggttttaagagaaggaaatca |
41537001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 41517952 - 41518035
Alignment:
| Q |
187 |
ttgatagagcttggtttgggattagaagcttcaaatagaccttttatttgggttattagggaaggaaatcaattacatgaattg |
270 |
Q |
| |
|
|||||||| |||||||| | ||||||||| |||| | |||||||||||||||| | || ||||||||| ||||| | |||||| |
|
|
| T |
41517952 |
ttgatagaacttggtttagcattagaagcaacaaaaataccttttatttgggttttaagagaaggaaatgaattagaagaattg |
41518035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 48532626 - 48532680
Alignment:
| Q |
201 |
tttgggattagaagcttcaaatagaccttttatttgggttattagggaaggaaat |
255 |
Q |
| |
|
||||| ||| ||||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
48532626 |
tttggcattggaagcgacaaataggccatttatttgggttattagggaaggaaat |
48532680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 41511272 - 41511324
Alignment:
| Q |
201 |
tttgggattagaagcttcaaatagaccttttatttgggttattagggaaggaa |
253 |
Q |
| |
|
||||||||||||||| |||| | || ||||||||||||||||||||||||| |
|
|
| T |
41511272 |
tttgggattagaagcaacaaaaattccatttatttgggttattagggaaggaa |
41511324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 8136752 - 8136682
Alignment:
| Q |
187 |
ttgatagagcttggtttgggattagaagcttcaaatagaccttttatttgggttattagggaaggaaatca |
257 |
Q |
| |
|
||||||||||| || || | ||||||||| |||| | ||||||||||||||||||||| || |||||||| |
|
|
| T |
8136752 |
ttgatagagctagggttagcattagaagcaacaaaaaaaccttttatttgggttattagagagggaaatca |
8136682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University