View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_20 (Length: 410)
Name: NF1484_high_20
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 392
Target Start/End: Original strand, 25686218 - 25686602
Alignment:
| Q |
9 |
gaagaatatacactttggagatacttaaatgaattagacctatatgcgtgtacatatgtccatcatatgtacaatttaccaaaaatacatacaaggtcat |
108 |
Q |
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| T |
25686218 |
gaagaaaatacactttggagatacttaaatgaattagacctatatgcgtgtacatatgtccatcatatgtacaatttacaaaaaatacatacaaggtcat |
25686317 |
T |
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| Q |
109 |
ggaccacactcccttggctatgttaatttctcataatttcatcaatgacaacccctagctcgatctgaagcataagaataaagtgattgggaagtaaatt |
208 |
Q |
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| T |
25686318 |
ggaccacactcccttggctatgttaatttctcataaattcatcaatgacaacccctagctcgatctgaagcataagaataaagtgattgggaagtaaatt |
25686417 |
T |
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| Q |
209 |
aaaaatagtaagtatgtaccttgttacctaactagaaaggttgaaattattaggg-nnnnnnnnnatataaagtcaatggttgtttggtgatattgaggc |
307 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25686418 |
aaaaatagtaagtatgtaccttgttacctaactaaaaaggttgaaattattagggttttttttttatataaagtcaatggttgtttggtgatattgaggc |
25686517 |
T |
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| Q |
308 |
aaaatgaaaagaaggaattcggtgtgtaaattaattggtaaaaaggtaaactaggccggctttggatgtgattgagaattgaagt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25686518 |
aaaatgaaaagaaggaattcggtgtgtaaattaattggtaaaaaggtaaactaggccggctttggatgtgattgagaattgaagt |
25686602 |
T |
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