View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_high_25 (Length: 382)

Name: NF1484_high_25
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_high_25
NF1484_high_25
[»] chr2 (7 HSPs)
chr2 (16-368)||(4852125-4852476)
chr2 (105-182)||(23397724-23397804)
chr2 (105-182)||(24200722-24200802)
chr2 (105-182)||(12024015-12024095)
chr2 (105-182)||(25249834-25249914)
chr2 (129-182)||(7214519-7214572)
chr2 (105-181)||(14530276-14530355)
[»] chr8 (9 HSPs)
chr8 (105-182)||(2626477-2626557)
chr8 (129-182)||(17823561-17823614)
chr8 (105-182)||(12670345-12670425)
chr8 (105-182)||(28817723-28817803)
chr8 (105-182)||(30454192-30454272)
chr8 (129-182)||(18164856-18164909)
chr8 (129-182)||(20869593-20869646)
chr8 (129-181)||(20284171-20284223)
chr8 (129-181)||(21070800-21070852)
[»] chr7 (5 HSPs)
chr7 (105-182)||(47077950-47078030)
chr7 (129-182)||(19426986-19427039)
chr7 (129-182)||(10693168-10693221)
chr7 (105-173)||(14732928-14732999)
chr7 (129-182)||(43557457-43557510)
[»] chr5 (4 HSPs)
chr5 (105-182)||(37024651-37024731)
chr5 (105-182)||(27328710-27328790)
chr5 (129-182)||(8170079-8170132)
chr5 (105-181)||(38879539-38879618)
[»] chr4 (6 HSPs)
chr4 (129-182)||(11054243-11054296)
chr4 (126-181)||(32629366-32629421)
chr4 (105-182)||(5306760-5306840)
chr4 (105-182)||(47528625-47528705)
chr4 (105-182)||(48598920-48599000)
chr4 (243-275)||(48327765-48327797)
[»] chr1 (5 HSPs)
chr1 (129-181)||(47214519-47214571)
chr1 (105-182)||(34725193-34725273)
chr1 (129-182)||(18724642-18724695)
chr1 (129-182)||(27201655-27201708)
chr1 (129-182)||(45812632-45812685)
[»] chr3 (8 HSPs)
chr3 (105-182)||(7696982-7697062)
chr3 (105-182)||(8247786-8247866)
chr3 (105-182)||(10870048-10870128)
chr3 (105-182)||(12525390-12525467)
chr3 (129-182)||(13628889-13628942)
chr3 (129-182)||(22123012-22123065)
chr3 (130-182)||(516417-516469)
chr3 (130-182)||(30928244-30928296)
[»] scaffold0187 (2 HSPs)
scaffold0187 (129-182)||(10145-10198)
scaffold0187 (129-182)||(20473-20526)
[»] chr6 (1 HSPs)
chr6 (129-182)||(29355954-29356007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (130-182)||(35115-35167)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 4852476 - 4852125
Alignment:
Q  16 atcaaaatcattgattgaatttgcacttgaccaaacacaagctttaacataataatcggggaaaccacattgnnnnnnnataacattaaggtaaccttgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  4852476 atcaaaatcattgattgaatttgcacttgaccaaacacaagctttaacataataatcggggaaaccacattgtttttt-ataacattaaggtaaccttgg 4852378  T
Q  116 tgcaattggcaaagttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtgnnnnnnnntaggtaaagctactacgttacacga 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||| ||||||||||| |    
T  4852377 tgcaactggcaaagttgtcatgtgaccgaaaagtcaggggttcaagtcctgcaaacagtctcttgtgaaaaaaaataggtaaagctgctacgttacacca 4852278  T
Q  216 gatgatggaccctttttcagactctatatatgcggaagttttagtgcaccggattaccctatatttattttatctatgttgaagttgtaatagtaatagt 315  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4852277 gatgatggaccctttttcgaactctatatatgcggaagtttaagtgcaccgaattaccctatatttattttatctatgttgaagttgtaatagtaatagt 4852178  T
Q  316 ttagtgcataaaagggagcagaaaagagaaaatagagaacccatgtataatct 368  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  4852177 ttagtacataaaagggagcagaaaagagaaaacagagaacccatgtataatct 4852125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 23397724 - 23397804
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttg---tcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||||||| ||| |||||||   ||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  23397724 ggtaaccttggtgcaactggtaaagttgttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagcctcttgtg 23397804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 24200802 - 24200722
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||| ||||| ||| ||||||||   |||||||| ||||||||| |||||||| ||||| |||||| ||||||||    
T  24200802 ggtaaccttgatgcaactggtaaagttgttgtcatgtgactgaaaagtcacgggttcaagtcctggaaacagcctcttgtg 24200722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 12024095 - 12024015
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||   |||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  12024095 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 12024015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 25249914 - 25249834
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||||||| ||||||||   |||||||| | || |||| |||||||| || || |||||||||||||||    
T  25249914 ggtaaccttggcgcaattggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcatggaaacagtctcttgtg 25249834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 7214519 - 7214572
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| || || |||||||||||||||    
T  7214519 gttgtcatgtgactgaaaggtcatgggttcaagtcttggaaacagtctcttgtg 7214572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 14530276 - 14530355
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttg---tcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgt 181  Q
    ||||||||||| |||| ||| |||||||   ||||||||| |||| |||| |||||||| ||||| |||||| |||||||    
T  14530276 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgt 14530355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 2626477 - 2626557
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttg---tcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||||||| |||||||   |||||||||||||| |||| |||||||| ||||| |||||| ||||||||    
T  2626477 ggtaaccttggcgcaattggtaaagttgttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 2626557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 17823561 - 17823614
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||||||||| |||| |||||||| ||||| |||||| ||||||||    
T  17823561 gttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 17823614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 12670425 - 12670345
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||   |||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  12670425 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 12670345  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 28817803 - 28817723
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||||||| ||| ||||||||   |||||||| | || |||| |||||||| ||||| |||||| ||||||||    
T  28817803 ggtaaccttggtgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtg 28817723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 30454272 - 30454192
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||   |||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  30454272 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 30454192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 18164909 - 18164856
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  18164909 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 18164856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 20869646 - 20869593
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  20869646 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 20869593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 20284223 - 20284171
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgt 181  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| |||||||    
T  20284223 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgt 20284171  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 21070852 - 21070800
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgt 181  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| |||||||    
T  21070852 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgt 21070800  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 47078030 - 47077950
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||   |||||||| |||| |||| |||||||| ||||| |||||||||||||||    
T  47078030 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagtctcttgtg 47077950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 19427039 - 19426986
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||||||||| |||| |||||||| ||||| |||||| ||||||||    
T  19427039 gttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 19426986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 10693221 - 10693168
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  10693221 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 10693168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 14732999 - 14732928
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacag 173  Q
    ||||||||||| |||| ||| ||||||||   |||||||| ||||||||| |||||||| ||||| ||||||    
T  14732999 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaagtcatgggttcaagtcctggaaacag 14732928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 43557457 - 43557510
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  43557457 gttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagcctcttgtg 43557510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 37024731 - 37024651
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||||||| ||| ||||||||   |||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  37024731 ggtaaccttggtgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 37024651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 27328710 - 27328790
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttg---tcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||  |||||||| |||||||   ||||||||| |||| ||||  ||||||| ||||| |||||||||||||||    
T  27328710 ggtaaccttgacgcaattggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagtctcttgtg 27328790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 8170132 - 8170079
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||||||||| |||| |||||||| ||||| |||||| || |||||    
T  8170132 gttgtcatgtgaccgaaaggtcacgggttcaagtcctggaaacagccttttgtg 8170079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 38879539 - 38879618
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttg---tcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgt 181  Q
    ||||||||||| |||| ||| |||||||   ||||||||| |||| |||| |||||||| ||||| |||||| |||||||    
T  38879539 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgt 38879618  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 11054296 - 11054243
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||||||||||||    
T  11054296 gttgtcatgtgactgaaaggtcacgggttcaagtcctgaaaacagtctcttgtg 11054243  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 32629421 - 32629366
Alignment:
Q  126 aaagttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgt 181  Q
    |||||||||||||||| |||| |||| |||||||||||||  |||||| |||||||    
T  32629421 aaagttgtcatgtgactgaaaggtcacgggttcaaatcctcgaaacagcctcttgt 32629366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 5306840 - 5306760
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttg---tcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| |||||||   ||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  5306840 ggtaaccttggcgcaactggtaaagttgatgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 5306760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 47528705 - 47528625
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||||||| ||| ||||||||   |||||||| |||| ||||  ||||||| ||||| |||||| ||||||||    
T  47528705 ggtaaccttggtgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtg 47528625  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 48599000 - 48598920
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||   |||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  48599000 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 48598920  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 48327797 - 48327765
Alignment:
Q  243 atatgcggaagttttagtgcaccggattaccct 275  Q
    ||||||||||||||||||||||||| |||||||    
T  48327797 atatgcggaagttttagtgcaccgggttaccct 48327765  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 47214519 - 47214571
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgt 181  Q
    ||||||||||||| |||| |||| |||||||| ||||| ||||||||||||||    
T  47214519 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagtctcttgt 47214571  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 34725273 - 34725193
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||   |||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  34725273 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 34725193  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 18724695 - 18724642
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  18724695 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 18724642  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 27201655 - 27201708
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  27201655 gttgtcatgtgactgaaaggtcatgggttcaagtcctggaaacagcctcttgtg 27201708  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 45812685 - 45812632
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| ||||  ||||||| ||||| |||||||||||||||    
T  45812685 gttgtcatgtgactgaaaggtcacaggttcaagtcctgaaaacagtctcttgtg 45812632  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 7697062 - 7696982
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||   ||||||||  ||| |||| |||||||| ||||| |||||||||||||||    
T  7697062 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactaaaaggtcacgggttcaagtcctggaaacagtctcttgtg 7696982  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 8247866 - 8247786
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||   |||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  8247866 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 8247786  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 10870128 - 10870048
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgt---catgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||   |||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  10870128 ggtaaccttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 10870048  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 12525390 - 12525467
Alignment:
Q  105 ggtaaccttggtgcaattggcaaagttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||| |||| ||| ||||||||||| |||| |||| ||||  ||||| | ||||| |||||| ||||||||    
T  12525390 ggtaaccttggcgcaactggtaaagttgtcatatgactgaaaggtcacaggttcgagtcctggaaacagcctcttgtg 12525467  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 13628942 - 13628889
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  13628942 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 13628889  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 22123065 - 22123012
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||  |||||||| ||||| |||||||||||||||    
T  22123065 gttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacagtctcttgtg 22123012  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 516417 - 516469
Alignment:
Q  130 ttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  516417 ttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 516469  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 30928296 - 30928244
Alignment:
Q  130 ttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  30928296 ttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 30928244  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 10198 - 10145
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  10198 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 10145  T

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Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 20526 - 20473
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  20526 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 20473  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 29356007 - 29355954
Alignment:
Q  129 gttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    ||||||||||||| |||| |||| |||||||| ||||| |||||| ||||||||    
T  29356007 gttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtg 29355954  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 35167 - 35115
Alignment:
Q  130 ttgtcatgtgaccgaaaagtcaggggttcaaatcctgcaaacagtctcttgtg 182  Q
    |||||||||||| | || |||| |||||||| ||||| |||||||||||||||    
T  35167 ttgtcatgtgactgtaaggtcacgggttcaagtcctgaaaacagtctcttgtg 35115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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