View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_26 (Length: 376)
Name: NF1484_high_26
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 40739286 - 40739632
Alignment:
| Q |
1 |
atacatgaacgaatataaatttctaaggcattcccgtaaaatattagttctccttttattccactaattatttaaaaataaacaagaaatcaattctata |
100 |
Q |
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| T |
40739286 |
atacatgaacgaatataaatttctaaggcattcccgtaaaatattagttctccttttattccactaattatttaaaaataaacaagaaatcaattctata |
40739385 |
T |
|
| Q |
101 |
ttttaaatttttgtgaatgtgtaagatttatgatcatagttttgtcattacggaagactttattttnnnnnnnntactaacaagtgcctttaaaatactt |
200 |
Q |
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| T |
40739386 |
ttttaaatttttgtgaatgtgtaagatttatgatcatagttttgtcattacggaagactttatcttttaaaaaatactaacaagtgcctttgaaatactt |
40739485 |
T |
|
| Q |
201 |
gttaaagaagccaaacaaagaagttttacgttaaaaacgattcnnnnnnnatgtttgaaaaattgactacacaattttaaatgcaatattgatatatttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
40739486 |
gttaaagaagccaaacaaagaagttttacgttaaaaacgatt------tttttttt------ttgaatacacaattttaaatgcaatattgatatatttg |
40739573 |
T |
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| Q |
301 |
ataaccttaacaagtgctacagagctatatatattgttagcctgaccttatcttaaatg |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40739574 |
ataaccttaacaagtgctacagagctatatatattgttagcctgaccttatcttaaatg |
40739632 |
T |
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