View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_27 (Length: 374)
Name: NF1484_high_27
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 39783868 - 39783511
Alignment:
| Q |
1 |
aagtagatgccatcattttgtgccaatgtttcaagaatcaattagaccataaatatttatgtgctttcctagaatcaatcctattttctacataaataac |
100 |
Q |
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| T |
39783868 |
aagtagatgccatcattttgtgccaatgtttcaagaatcaattagaccataaatatttatgtgctttcctagaatcaatcctattttctatataaataac |
39783769 |
T |
|
| Q |
101 |
tctattctcttagaattttcctcatttaagcttaacctgtgtatgaaggtaaacttgggacaaagaaggttcaaaactagttagcctctatagaaactaa |
200 |
Q |
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| T |
39783768 |
tctattctcttagaattttcctcatttaagcttaacctgtgtatgaaggtaaacttgggacaaagaaggttcaaaactagttagcctctatagaaactaa |
39783669 |
T |
|
| Q |
201 |
attgatcattcatggagaagcttgttaggtcacgtgacaaagaatacatgaggatggccatgttaaagcatgaagaaactttcaaacaacaggtacttct |
300 |
Q |
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| T |
39783668 |
attgatcattgatggagaagcttgttaggtcatgtgacaaagaatacatgaggatggccatgttaaagcatgaagaaactttcaaacaacaggtacttct |
39783569 |
T |
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| Q |
301 |
atatctattcctccacgttattctttctataagtattagtagttcaaggtatttgatg |
358 |
Q |
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| T |
39783568 |
atatctattcctccacgttattctttctataagtattagtagttcaaggtatttgatg |
39783511 |
T |
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