View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_28 (Length: 371)
Name: NF1484_high_28
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 105 - 353
Target Start/End: Original strand, 6465010 - 6465266
Alignment:
| Q |
105 |
atagatattaaatagtaaaaaatgagaaagaagtccacgagaatgggaaggtggtcagagtatcgtaccaataataaacgaagcagtaaacatccgtgat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6465010 |
atagatattaaatagtaaaaaatgagaaagaagtccacgagaatgggaaggtggtcagagtatcgtaccaataataaacgaagcagtaaacatccgtgat |
6465109 |
T |
|
| Q |
205 |
tcgtagaccccacatccgctgaaat--------tatatattttcctctcccgctttcaccattttccatattcgaaactctcgtttttcgcaactcaggt |
296 |
Q |
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||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6465110 |
tcgcagaccccacatccactgaaattcaactcctatatatcttcctctcccgctttcaccattttccatattcgaaactctcgtttttcgcaactcgggt |
6465209 |
T |
|
| Q |
297 |
ctctccgtcactcacagagttcattctaactcgttcttcttgactcagtcattgcgt |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6465210 |
ctctccgtcactcacagagttcattctaactcgttcttcttgactcagtcattgcgt |
6465266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 6464960 - 6465000
Alignment:
| Q |
25 |
atacattaattattcaatgtattttaaaagtgaagttttat |
65 |
Q |
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| T |
6464960 |
atacattaattattcaaggtattttaaaagtgaagttttat |
6465000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 6464938 - 6464899
Alignment:
| Q |
25 |
atacattaattattcaatgtattttaaaagtgaagtttta |
64 |
Q |
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| T |
6464938 |
atacattaattattcaatgtattttaaaagtaaagtttta |
6464899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 2198118 - 2198155
Alignment:
| Q |
26 |
tacattaattattcaatgtattttaaaagtgaagtttt |
63 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
2198118 |
tacattaattattcaatgtatttaaaaagtgaagtttt |
2198155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 22720584 - 22720625
Alignment:
| Q |
22 |
tgcatacattaattattcaatgtattttaaaagtgaagtttt |
63 |
Q |
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||||||||||||||||||||||||| | ||||||| |||||| |
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| T |
22720584 |
tgcatacattaattattcaatgtatctaaaaagtggagtttt |
22720625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 33123070 - 33123032
Alignment:
| Q |
25 |
atacattaattattcaatgtattttaaaagtgaagtttt |
63 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||| |
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|
| T |
33123070 |
atacattaattattcaatgtatttaaaaagtgaagtttt |
33123032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 10405110 - 10405064
Alignment:
| Q |
25 |
atacattaattattcaatgtattttaaaagtgaagttttatctataa |
71 |
Q |
| |
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|||||||||||||| ||||||||| |||| ||||||||||| ||||| |
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|
| T |
10405110 |
atacattaattatttaatgtatttaaaaaatgaagttttatttataa |
10405064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 26982823 - 26982785
Alignment:
| Q |
25 |
atacattaattattcaatgtattttaaaagtgaagtttt |
63 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| |
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|
| T |
26982823 |
atacattaattattcaatgtatctaaaaagtgaagtttt |
26982785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 26468353 - 26468315
Alignment:
| Q |
25 |
atacattaattattcaatgtattttaaaagtgaagtttt |
63 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
26468353 |
atacattaattattcaatgtatttaaaaagtgaaatttt |
26468315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 42364280 - 42364231
Alignment:
| Q |
24 |
catacattaattattcaatgtattttaaaagtgaagttttatctataaca |
73 |
Q |
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||||||||||||||||||||||||| |||||| || |||| | ||||||| |
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| T |
42364280 |
catacattaattattcaatgtatttaaaaagtaaatttttgtttataaca |
42364231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 32186948 - 32186900
Alignment:
| Q |
25 |
atacattaattattcaatgtattttaaaagtgaagttttatctataaca |
73 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |||| | ||||||| |
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| T |
32186948 |
atacattaattattccatgtatttaaaaagtgaaattttgtttataaca |
32186900 |
T |
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