View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_high_29 (Length: 369)

Name: NF1484_high_29
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_high_29
NF1484_high_29
[»] chr4 (3 HSPs)
chr4 (1-355)||(1006611-1006965)
chr4 (39-107)||(32916566-32916634)
chr4 (238-299)||(1451611-1451672)
[»] chr2 (2 HSPs)
chr2 (1-118)||(15766217-15766336)
chr2 (23-64)||(36052371-36052414)
[»] chr1 (2 HSPs)
chr1 (180-305)||(52474802-52474926)
chr1 (41-99)||(16516030-16516088)
[»] chr6 (1 HSPs)
chr6 (23-107)||(5894251-5894337)
[»] scaffold0527 (2 HSPs)
scaffold0527 (23-87)||(2177-2243)
scaffold0527 (23-87)||(10240-10306)
[»] chr5 (2 HSPs)
chr5 (26-102)||(25034569-25034647)
chr5 (216-275)||(38791958-38792017)
[»] chr3 (1 HSPs)
chr3 (3-107)||(41251201-41251307)
[»] chr8 (1 HSPs)
chr8 (40-83)||(7248506-7248549)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 1006965 - 1006611
Alignment:
Q  1 agttttctccggtgtcaaattcaagtcattaaacatcatctctcttgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1006965 agttttctccggtgtcaaattcaagtcattaaacatcatctctcttgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttca 1006866  T
Q  101 ctagaccttccgatcactaaagaggattagtcccacaaaagcaactccgctagtgtgagattagaggtttccacttgccatgttcttttgtttgcgtttc 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1006865 ctagaccttccgatcactaaagaggattagtcccgcaaaagcaactccgctagtgtgagattagaggtttccacttgccatgttcttttgtttgcgtttc 1006766  T
Q  201 atgttgcccccataaaggaatttctcacagtcctcgactccaattcttgtaaactcttttacaagtgctttcatacgttcagccaatgaagtattataat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1006765 atgttgcccccataaaggaatttctcacagtcctcgactccaattcttgtaaactcttttacaagtgctttcatacgttcagccaatgaagtattataat 1006666  T
Q  301 actctaagacggcttggtccgttgctgccattcttaccatcctttgcaagtaact 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1006665 actctaagacggcttggtccgttgctgccattcttaccatcctttgcaagtaact 1006611  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 32916566 - 32916634
Alignment:
Q  39 tctctcttgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttcactagacc 107  Q
    |||||||| ||||||| ||||||||| |||||| |||||||||||| |||| |||||||||||||||||    
T  32916566 tctctcttaattttaatatttaatttctcaaatgcatttatttttcgataggtagaatttcactagacc 32916634  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 1451672 - 1451611
Alignment:
Q  238 ctccaattcttgtaaactcttttacaagtgctttcatacgttcagccaatgaagtattataa 299  Q
    ||||||||||| |||||||||| ||||  |||||||||||||||||||||||| ||||||||    
T  1451672 ctccaattcttataaactctttgacaatcgctttcatacgttcagccaatgaactattataa 1451611  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 15766336 - 15766217
Alignment:
Q  1 agttttctccggtgtcaaattcaagtcattaaacatcatctctct--tgattttaacatttaatttttcaaatacatttatttttcaatagatagaattt 98  Q
    ||||||||| |||| |||||  ||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||| ||||  ||||    
T  15766336 agttttctcgggtgccaaatctaagtcattaaacatcttctctctcctgattttaacatttaatttctcaaatacatttatttttcaatggataagattt 15766237  T
Q  99 cactagaccttccgatcact 118  Q
    || | |||| ||| ||||||    
T  15766236 cattggaccgtccaatcact 15766217  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 36052414 - 36052371
Alignment:
Q  23 aagtcattaaacatc--atctctcttgattttaacatttaattt 64  Q
    ||||||| |||||||  |||||||||||||||||||||||||||    
T  36052414 aagtcatcaaacatcttatctctcttgattttaacatttaattt 36052371  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 52474926 - 52474802
Alignment:
Q  180 atgttcttttgtttgcgtttcatgttgcccccataaaggaatttctcacagtcctcgactccaattcttgtaaactcttttacaagtgctttcatacgtt 279  Q
    |||||||||||||  |||||| |||||| || |||||||||||||||||| ||||   |||||| |||| |||||||||| ||||| |||| || |||||    
T  52474926 atgttcttttgttcacgtttcctgttgcacc-ataaaggaatttctcacactccttagctccaaatcttataaactctttgacaagcgcttgcaaacgtt 52474828  T
Q  280 cagccaatgaagtattataatactct 305  Q
    |||||||| || |||||||| |||||    
T  52474827 cagccaataaactattataacactct 52474802  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 16516088 - 16516030
Alignment:
Q  41 tctcttgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttc 99  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| ||||| |||||    
T  16516088 tctcttgattgtaacatttaatttttcaaatgtatttatttttcaatggataggatttc 16516030  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 5894337 - 5894251
Alignment:
Q  23 aagtcattaaacatcatctctct--tgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttcactagacc 107  Q
    ||||||||||||||| |||||||  ||||||||||||||||||| |||||| ||||||||||||||  | |||||||| ||||||||    
T  5894337 aagtcattaaacatcttctctctcttgattttaacatttaatttatcaaatgcatttatttttcaacgggtagaattttactagacc 5894251  T

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Target: scaffold0527 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 2243 - 2177
Alignment:
Q  23 aagtcattaaacatc--atctctcttgattttaacatttaatttttcaaatacatttatttttcaat 87  Q
    |||||||||||| ||  || |||||||||||||||||||||||| |||||| |||||||||||||||    
T  2243 aagtcattaaacctcttatttctcttgattttaacatttaatttctcaaatgcatttatttttcaat 2177  T

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Target: scaffold0527; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 10306 - 10240
Alignment:
Q  23 aagtcattaaacatc--atctctcttgattttaacatttaatttttcaaatacatttatttttcaat 87  Q
    |||||||||||| ||  || |||||||||||||||||||||||| |||||| |||||||||||||||    
T  10306 aagtcattaaacctcttatttctcttgattttaacatttaatttctcaaatgcatttatttttcaat 10240  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 25034647 - 25034569
Alignment:
Q  26 tcattaaacatc--atctctcttgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttcact 102  Q
    ||||||||||||   |||||||||||||||||||||||||| || ||| || |||||||||||| | ||| ||||||||    
T  25034647 tcattaaacatcttctctctcttgattttaacatttaatttctcgaatgcacttatttttcaattggtaggatttcact 25034569  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 38791958 - 38792017
Alignment:
Q  216 aggaatttctcacagtcctcgactccaattcttgtaaactcttttacaagtgctttcata 275  Q
    |||||||||||||||| ||   ||||||||||| |||||||||| |||||||||| ||||    
T  38791958 aggaatttctcacagttcttagctccaattcttataaactctttgacaagtgcttccata 38792017  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 41251307 - 41251201
Alignment:
Q  3 ttttctccggtgtcaaattcaagtcattaaacatcatctctct--tgattttaacatttaatttttcaaatacatttatttttcaatagatagaatttca 100  Q
    ||||| ||| ||||||||  || |||||||||||  |||||||  |||||||||||||||| || | ||||| |||||||||||||| | ||| |||||     
T  41251307 ttttcaccgatgtcaaatctaaatcattaaacattttctctctcatgattttaacatttaacttcttaaataaatttatttttcaatgggtaggatttcc 41251208  T
Q  101 ctagacc 107  Q
    |||||||    
T  41251207 ctagacc 41251201  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 7248506 - 7248549
Alignment:
Q  40 ctctcttgattttaacatttaatttttcaaatacatttattttt 83  Q
    |||||| |||||||||||||||||| |||||| |||||||||||    
T  7248506 ctctctggattttaacatttaatttctcaaatgcatttattttt 7248549  T

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