View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484_high_3 (Length: 602)
Name: NF1484_high_3
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 20006076 - 20006449
Alignment:
| Q |
18 |
atgatggtttatcaatcatatggtgttgtgcctacnnnnnnncacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20006076 |
atgatggtttatcaatcatatggtgttgtgcctacaaaaaa-cacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaa |
20006174 |
T |
|
| Q |
118 |
gnnnnnnnggaaccaatacctttaaaagttctgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatactgaatca |
217 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20006175 |
gaaaaaaaggaaccaatacctttaaaagttatgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatattgaatca |
20006274 |
T |
|
| Q |
218 |
aaaacttccataatatgaatataaatgttcaaccaaaagtaaagagtgcttttatttatttggacctgatttacttcaacaaaatatttttgatttcgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
20006275 |
gaaacttccataatatgaatataaatgttcaaccaaaagtaaagagtacttttatttatttggacctgatttacttcaacaaaatatttttgatttggat |
20006374 |
T |
|
| Q |
318 |
tgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatcaatgatctgagatgtagaaaactcag |
392 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
20006375 |
tgaagggagctaaatttgcttgaattctctattgtgtgtcaatcccatcaatgatctgagatgtagaaaactcag |
20006449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 411 - 584
Target Start/End: Original strand, 20007672 - 20007846
Alignment:
| Q |
411 |
gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
20007672 |
gactgacacatatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtac |
20007771 |
T |
|
| Q |
511 |
atcctagagtaaag-nnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatac |
584 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
20007772 |
atcctagagtaaagtattttttttttccatcctttgcattttttgaattgattttaacagttccaaaacccatac |
20007846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 14124289 - 14123917
Alignment:
| Q |
18 |
atgatggtttatcaatcatatggtgttgtgcctacnnnnnnncacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14124289 |
atgatggtttatcaatcatatggtgttgtgcctacaaaaa--cacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaa |
14124192 |
T |
|
| Q |
118 |
gnnnnnnnggaaccaatacctttaaaagttctgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatactgaatca |
217 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
14124191 |
gaaaaaaaggaaccaatacctttaaaagttatgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatattgaatca |
14124092 |
T |
|
| Q |
218 |
aaaacttccataatatgaatataaatgttcaaccaaaagtaaagagtgcttttatttatttggacctgatttacttcaacaaaatatttttgatttcgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14124091 |
gaaacttccataatatgaatataaatgttcaacaaaaagtaaagagtacttttatttatttggacctgatttacttcaacaaaatatttttgatttggat |
14123992 |
T |
|
| Q |
318 |
tgaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatcaatgatctgagatgtagaaaactcag |
392 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
14123991 |
tgaagggagctaaatttgcttgaattctctattgtgtgtcaatcccatcaatgatctgagatgtagaaaactcag |
14123917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 411 - 584
Target Start/End: Complemental strand, 14122694 - 14122522
Alignment:
| Q |
411 |
gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
14122694 |
gactgacacatatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtac |
14122595 |
T |
|
| Q |
511 |
atcctagagtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatac |
584 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
14122594 |
atcctagagtaaagtatttttt-ttccatcctttgcattttttgaattgattttaacagttccaaaacccatac |
14122522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 35051329 - 35050957
Alignment:
| Q |
19 |
tgatggtttatcaatcatatggtgttgtgcctacnnnnnnncacataaatgtaagaattggtgatttatattaaatcttgactatatcagtaggagaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||| || |||||| |
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|
| T |
35051329 |
tgatggtttatcaatcatatggtgttgtgcctacaaaaaa-cacataaatgtaagaattgctgatttatattaaaacttgactagatcactaacagaaag |
35051231 |
T |
|
| Q |
119 |
nnnnnnnggaaccaatacctttaaaagttctgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaatatactgaatcaa |
218 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||||||| |
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|
| T |
35051230 |
aaaagaaggaaccgatacctctaaaagttctgaacatgtaatattatgatttatgctttgagaatagtatgggacctgttaaacatttatattgaatcag |
35051131 |
T |
|
| Q |
219 |
aaacttccataatatgaatataaatgttcaaccaaaagtaaagagtgcttttatttatttggacctgatttacttcaacaaaatatttttgatttcgatt |
318 |
Q |
| |
|
| |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35051130 |
atacttccataatatgaatagaaatgttcaaacaaaagtaaagagtgcttgaatttatttggacctgatttacttcaacaaaatatttttgatttggatt |
35051031 |
T |
|
| Q |
319 |
gaagggagctaaatttgcttaaattctctcttgtgtgccaatcccatcaatgatctgagatgtagaaaactcag |
392 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35051030 |
gaagggagctaaatttgcttgaattctctgttgtgtgccaatcccatcaatgatttgagatgtagaaaactcag |
35050957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 418 - 584
Target Start/End: Complemental strand, 35049012 - 35048848
Alignment:
| Q |
418 |
acatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctag |
517 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35049012 |
acatatttactctagccatacactgtgctcttatggtaggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctag |
35048913 |
T |
|
| Q |
518 |
agtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatac |
584 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35048912 |
agtaaagtattttt--ttccatcctttgcattttttgaattgattttaacagttccaaaacccatac |
35048848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 415 - 584
Target Start/End: Original strand, 15635878 - 15636045
Alignment:
| Q |
415 |
gacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcc |
514 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15635878 |
gacacatgtttactctagccatacattgtgctcttatggtagggtttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcc |
15635977 |
T |
|
| Q |
515 |
tagagtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatac |
584 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
15635978 |
tagagtaaagtattttt--ttccatcctttgcatttttttaattgattttaacagttccaaaacccatac |
15636045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 411 - 584
Target Start/End: Original strand, 53325164 - 53325336
Alignment:
| Q |
411 |
gactgacacatatttactctagccatacattgtgctcttgtgatgggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtac |
510 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
53325164 |
gactgacacatatttactctagctatacattgtgctcttatggtaggatttggtctcaaaaggttctttgagttactcacatagcttcttgcacaagtac |
53325263 |
T |
|
| Q |
511 |
atcctagagtaaagnnnnnnnncttccatcctttgcatattttgaattgattttaacagttccaaaacccatac |
584 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53325264 |
atcctagagtaaagtatttttt-ttccatcctttgcattttttgaattgattttaacagttccaaaacccatac |
53325336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 53324287 - 53324485
Alignment:
| Q |
13 |
tcatcatgatggtttatcaatcatatggtgttgtgcctacnnnnnnncacataaatgtaagaattggtgatttatattaaatcttgactatatcagtagg |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53324287 |
tcattatgatggtttatcaatcatatggtgttgtgcctacaaaaa---acacaaatgtaagaattggtgatttatattacatcttgactatatcagtagg |
53324383 |
T |
|
| Q |
113 |
agaaagnnnnnnng------gaaccaatacctttaaaagttctgaacatgtaatattatgatttatgctttcagaataatatgggacctgttaaacaaat |
206 |
Q |
| |
|
||| || | |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
53324384 |
agagagagagagagaaaaaggaaccaatacctctaaaagttctgaacatgtaatattatgatttatgctttgagaataatatggaacctgttaaacaaat |
53324483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 8532270 - 8532316
Alignment:
| Q |
287 |
tttacttcaacaaaatatttttgatttcgattgaagggagctaaatt |
333 |
Q |
| |
|
||||||||| |||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
8532270 |
tttacttcagcaaaatgttcttgatttggattgaagggagctaaatt |
8532316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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