View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_34 (Length: 333)
Name: NF1484_high_34
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 5253674 - 5253993
Alignment:
| Q |
16 |
attccaaatatcattactactactctaatattttttagatgtagctactctatagttgtaagttgaaactaagattacaaactttatgatttgaatgaca |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5253674 |
attccaaatatcattactgctactctaatattttttagatgtagctactctatagttgtaagttgaaactaagattacaaactttatgattagaatgaca |
5253773 |
T |
|
| Q |
116 |
ttttaatatatacttcggttatcttttcaaactatgcctnnnnnnnnntaacacattgagataaaaaggctcagcactaacaacccttaatatatatgtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5253774 |
ttttaatatatacttcggttatcttttcaaactatgcctaaaaaataataacacattgagataaaaaggctcagcactaacaacccttaatatatatgtt |
5253873 |
T |
|
| Q |
216 |
ttgtaa-----------ttgtttatagggttagataatgataagttatttatgaatataatagaagtaacaagacaaaatattgattccttactcatctt |
304 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
5253874 |
ttgtaattgtttaatacttgtttatagggttagataatgataagttatttatgaatataatagaagtaacaagacaagatattgattccttatacatctt |
5253973 |
T |
|
| Q |
305 |
ggggtaagttcagtgtctgtg |
325 |
Q |
| |
|
||||||||||||||| |||| |
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| T |
5253974 |
-gggtaagttcagtgtttgtg |
5253993 |
T |
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