View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_high_38 (Length: 323)

Name: NF1484_high_38
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_high_38
NF1484_high_38
[»] chr4 (23 HSPs)
chr4 (18-171)||(23408668-23408821)
chr4 (18-167)||(23868733-23868882)
chr4 (18-171)||(23402071-23402224)
chr4 (18-171)||(23453500-23453653)
chr4 (18-167)||(24307224-24307373)
chr4 (18-167)||(23415837-23415986)
chr4 (18-167)||(23885828-23885977)
chr4 (18-167)||(26832736-26832885)
chr4 (18-167)||(26434025-26434174)
chr4 (18-167)||(26435805-26435954)
chr4 (28-167)||(34662179-34662318)
chr4 (205-315)||(24307076-24307186)
chr4 (202-315)||(26832588-26832701)
chr4 (211-311)||(23401931-23402031)
chr4 (202-315)||(26433877-26433990)
chr4 (202-315)||(26435657-26435770)
chr4 (211-311)||(23408861-23408961)
chr4 (202-311)||(23416018-23416127)
chr4 (202-311)||(23868589-23868698)
chr4 (202-315)||(23885680-23885793)
chr4 (208-312)||(34662359-34662463)
chr4 (214-311)||(23453696-23453793)
chr4 (18-78)||(23451860-23451920)
[»] chr1 (4 HSPs)
chr1 (18-170)||(40795767-40795919)
chr1 (28-167)||(41670401-41670540)
chr1 (18-167)||(29391467-29391616)
chr1 (39-75)||(33216558-33216594)
[»] chr7 (2 HSPs)
chr7 (40-167)||(40180420-40180547)
chr7 (39-75)||(47317395-47317431)
[»] chr8 (1 HSPs)
chr8 (42-167)||(29684701-29684826)
[»] chr2 (1 HSPs)
chr2 (263-311)||(14715372-14715420)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 23408668 - 23408821
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||    
T  23408668 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatg 23408767  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 171  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  23408768 tctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca 23408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 23868882 - 23868733
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868882 gttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 23868783  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23868782 tctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23868733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 23402224 - 23402071
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  23402224 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatg 23402125  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 171  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23402124 tctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca 23402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 23453500 - 23453653
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  23453500 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatg 23453599  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 171  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23453600 tctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca 23453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 24307373 - 24307224
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307373 gttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 24307274  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    |||||||||||||||||||| || ||||| || |||||||||||||||||    
T  24307273 tctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc 24307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 23415837 - 23415986
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  23415837 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatg 23415936  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23415937 tctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23415986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 23885977 - 23885828
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  23885977 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatg 23885878  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23885877 tctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23885828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 26832885 - 26832736
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  26832885 gttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatg 26832786  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26832785 tctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26832736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 26434174 - 26434025
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  26434174 gttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatg 26434075  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    ||||| |||||||||||||| || ||||| ||||||||||||||||||||    
T  26434074 tctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 26435954 - 26435805
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    ||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  26435954 gttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatg 26435855  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26435854 tctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 34662179 - 34662318
Alignment:
Q  28 gcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaa 127  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||    
T  34662179 gcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaa 34662278  T
Q  128 cttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    |||||||||| || ||||| |||||||||||||| |||||    
T  34662279 cttgtttcagaaccttgaagatgtagatcttgtaggtttc 34662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 205 - 315
Target Start/End: Complemental strand, 24307186 - 24307076
Alignment:
Q  205 gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt 304  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  24307186 gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt 24307087  T
Q  305 tcttctctgct 315  Q
    |||||||||||    
T  24307086 tcttctctgct 24307076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 26832701 - 26832588
Alignment:
Q  202 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 301  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26832701 ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26832602  T
Q  302 gtttcttctctgct 315  Q
    ||||||||||||||    
T  26832601 gtttcttctctgct 26832588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 23402031 - 23401931
Alignment:
Q  211 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23402031 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23401932  T
Q  311 c 311  Q
    |    
T  23401931 c 23401931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 26433990 - 26433877
Alignment:
Q  202 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 301  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26433990 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26433891  T
Q  302 gtttcttctctgct 315  Q
    ||||||||||||||    
T  26433890 gtttcttctctgct 26433877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 26435770 - 26435657
Alignment:
Q  202 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 301  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26435770 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26435671  T
Q  302 gtttcttctctgct 315  Q
    ||||||||||||||    
T  26435670 gtttcttctctgct 26435657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 211 - 311
Target Start/End: Original strand, 23408861 - 23408961
Alignment:
Q  211 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 310  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23408861 gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23408960  T
Q  311 c 311  Q
    |    
T  23408961 c 23408961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 23416018 - 23416127
Alignment:
Q  202 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 301  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |    
T  23416018 ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg 23416117  T
Q  302 gtttcttctc 311  Q
    ||||||||||    
T  23416118 gtttcttctc 23416127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 23868698 - 23868589
Alignment:
Q  202 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 301  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23868698 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg 23868599  T
Q  302 gtttcttctc 311  Q
    ||||||||||    
T  23868598 gtttcttctc 23868589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 23885793 - 23885680
Alignment:
Q  202 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 301  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || |    
T  23885793 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg 23885694  T
Q  302 gtttcttctctgct 315  Q
    ||||||||||||||    
T  23885693 gtttcttctctgct 23885680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 34662359 - 34662463
Alignment:
Q  208 gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct 307  Q
    |||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  34662359 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct 34662458  T
Q  308 tctct 312  Q
    |||||    
T  34662459 tctct 34662463  T

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Target: chr4; HSP #22
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 23453696 - 23453793
Alignment:
Q  214 ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc 311  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||||||||||    
T  23453696 ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctc 23453793  T

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Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 23451860 - 23451920
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaa 78  Q
    |||||| ||||||||||||||  |||||||||| |||||||| |||||||| |||||||||    
T  23451860 gttgtagcgagcaagtctggagtattcttgagcgagcttctcaaagatatcgttgatgaaa 23451920  T

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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 40795919 - 40795767
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    |||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| ||||||    
T  40795919 gttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatg 40795820  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac 170  Q
    || || ||||| || || || || ||||| |||||||||||||| ||||||||    
T  40795819 tcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac 40795767  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 167
Target Start/End: Complemental strand, 41670540 - 41670401
Alignment:
Q  28 gcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaa 127  Q
    ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| || ||||    
T  41670540 gcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaa 41670441  T
Q  128 cttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    | || || || || ||||| |||||||||||||| |||||    
T  41670440 cctgcttgagaaccttgaagatgtagatcttgtaggtttc 41670401  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 29391616 - 29391467
Alignment:
Q  18 gttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatg 117  Q
    |||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||   || ||||| ||     
T  29391616 gttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctata 29391517  T
Q  118 tctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 167  Q
    || || ||||| ||||| || || ||||| ||||| ||||| || |||||    
T  29391516 tcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc 29391467  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
Q  39 tgattcttgagcaagcttctcgaagatatcattgatg 75  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33216594 tgattcttgagcaagcttcacgaagatatcattgatg 33216558  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 40180420 - 40180547
Alignment:
Q  40 gattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagta 139  Q
    ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| |||||||| |    
T  40180420 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 40180519  T
Q  140 ctttgaatatgtagatcttgtatgtttc 167  Q
    | ||||| ||||| |||||||| |||||    
T  40180520 ccttgaagatgtatatcttgtaggtttc 40180547  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
Q  39 tgattcttgagcaagcttctcgaagatatcattgatg 75  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47317431 tgattcttgagcaagcttcacgaagatatcattgatg 47317395  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
Q  42 ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact 141  Q
    ||||||||| || ||||  |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || ||     
T  29684826 ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc 29684727  T
Q  142 ttgaatatgtagatcttgtatgtttc 167  Q
    |||||||| || |||||||| |||||    
T  29684726 ttgaatatatatatcttgtaggtttc 29684701  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 14715420 - 14715372
Alignment:
Q  263 gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc 311  Q
    ||||||||||  |||| ||| | ||||||||||||||||||||||||||    
T  14715420 gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctc 14715372  T

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