View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_40 (Length: 313)
Name: NF1484_high_40
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 18345231 - 18345542
Alignment:
| Q |
1 |
ctcaatatagctagggtatagtaggttaaattcagacgaatttgcaaatgattttagttgatttttaaaaaggtagttataaatgaattgaaatgagaag |
100 |
Q |
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| T |
18345231 |
ctcaatatagctagggtacagtaggttaaattcagacgaatttgcaaatgattttagttgatttttaaaaaggtagttataaatgaattgaaatgagaag |
18345330 |
T |
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| Q |
101 |
agcggaatacaacgttgggagataagtgcaaagtattggttcagtgggtcatctaagagggcagatgctaggagacggcgggcagcagcgatgagtgatg |
200 |
Q |
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| T |
18345331 |
agtggaatacaacgttgggagataagtgcaaagtattggttcagtgggtcatctaagagggcagatgctaggagacggcgggcagcagcgatgagtgatg |
18345430 |
T |
|
| Q |
201 |
gagagtaacgtttggtgggtttggaagggatgaaacggttttggaagacaccgccgggggaggcaacataggtggtgggatctgcatgaacgtagatgtt |
300 |
Q |
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| T |
18345431 |
gagagtaacgtttggtgggtttggaagggatgaaacggttttggaagacaccgccgggggaggcgacataggtggtgggatctgcatggacgtagatgtt |
18345530 |
T |
|
| Q |
301 |
gaagaggtggtt |
312 |
Q |
| |
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|||||||||||| |
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| T |
18345531 |
gaagaggtggtt |
18345542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 59 - 312
Target Start/End: Original strand, 18340131 - 18340384
Alignment:
| Q |
59 |
tgatttttaaaaaggtagttataaatgaattgaaatgagaagagcggaatacaacgttgggagataagtgcaaagtattggttcagtgggtcatctaaga |
158 |
Q |
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| T |
18340131 |
tgatttttaaaaaggtagttataaacgaatcgaaacgacaagagcggaacacagtgttgagaaactagggcaaagtattggttaagcggatcatctaaga |
18340230 |
T |
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| Q |
159 |
gggcagatgctaggagacggcgggcagcagcgatgagtgatggagagtaacgtttggtgggtttggaagggatgaaacggttttggaagacaccgccggg |
258 |
Q |
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| T |
18340231 |
gcgcagaagctagaagacgtctggcagcggagatgagtgatggtgaggcacgttgggttggtttggaagagatgaaacggttatggaagacaccgccagg |
18340330 |
T |
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| Q |
259 |
ggaggcaacataggtggtgggatctgcatgaacgtagatgttgaagaggtggtt |
312 |
Q |
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| T |
18340331 |
ggagacgacggaggtggtggggtctgcatggatgtatatattgaagagatggtt |
18340384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 18303566 - 18303390
Alignment:
| Q |
67 |
aaaaaggtagttataaatgaattgaaatgagaagagcggaatacaacgttgggaga-taagtgcaaagtattggttcagtgggtcatctaagagggcaga |
165 |
Q |
| |
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||||||| ||||||||| ||| |||| |||||||| ||||||||| ||||||||| |||| |||||||||||||| |||||||||| || || |||| |
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| T |
18303566 |
aaaaagggagttataaacaaatcgaaacgagaagagtggaatacaatgttgggagactaag-gcaaagtattggttatgtgggtcatccaatagagcagt |
18303468 |
T |
|
| Q |
166 |
tgctaggagacggcgggcagcagcgatgagtgatggagagtaacgtttggtgggtttggaagggatgaaacggttttg |
243 |
Q |
| |
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|||| ||||||||| ||||| || || |||| |||||| |||| || | ||||||||||||||| ||||||| |
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| T |
18303467 |
ggctaagagacggcgagcagcggctataagtgtcggagaggcgcgttgagttgttttggaagggatgaagtggttttg |
18303390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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