View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_high_41 (Length: 312)

Name: NF1484_high_41
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_high_41
NF1484_high_41
[»] chr3 (16 HSPs)
chr3 (18-306)||(24840209-24840497)
chr3 (18-306)||(19943314-19943602)
chr3 (18-302)||(26651632-26651916)
chr3 (32-302)||(19818156-19818426)
chr3 (32-149)||(20005234-20005351)
chr3 (32-242)||(19853171-19853381)
chr3 (32-297)||(19811884-19812149)
chr3 (32-302)||(26646609-26646879)
chr3 (32-237)||(19989186-19989391)
chr3 (18-248)||(19857723-19857954)
chr3 (32-186)||(19955790-19955944)
chr3 (32-213)||(19950812-19950993)
chr3 (32-123)||(19838162-19838253)
chr3 (44-213)||(19848675-19848844)
chr3 (35-302)||(20016451-20016718)
chr3 (35-126)||(20045898-20045989)
[»] chr5 (4 HSPs)
chr5 (32-302)||(9814636-9814906)
chr5 (71-237)||(26355215-26355381)
chr5 (33-175)||(38435381-38435523)
chr5 (229-302)||(2319480-2319553)
[»] chr1 (1 HSPs)
chr1 (49-294)||(1716818-1717066)
[»] chr6 (1 HSPs)
chr6 (19-187)||(34408323-34408492)
[»] chr7 (3 HSPs)
chr7 (229-302)||(48259460-48259533)
chr7 (229-302)||(45887493-45887566)
chr7 (229-302)||(47331714-47331787)
[»] chr4 (2 HSPs)
chr4 (229-302)||(55864472-55864545)
chr4 (28-78)||(6397983-6398033)
[»] chr8 (1 HSPs)
chr8 (59-127)||(22652364-22652432)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 24840209 - 24840497
Alignment:
Q  18 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840209 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 24840308  T
Q  118 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840309 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttg 24840408  T
Q  218 agctgaagttcatcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttgcttc 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840409 agctgaagttcatcaacccacttaatccatttctcatgtgggtagtgccacccattgaaatggattttcaaaggccactcctttgcttc 24840497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 19943602 - 19943314
Alignment:
Q  18 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 117  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19943602 caaagagagagtatccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctc 19943503  T
Q  118 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttg 217  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| || ||||||||||||    
T  19943502 aacaatcccacaaaccaagtcttgatttttaattatgcagctcttaatactcattataggttcaaagattctagcttttttccatactgattcatatttg 19943403  T
Q  218 agctgaagttcatcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttgcttc 306  Q
     ||| |||||| ||||||||||||| |||||||||||| ||| |||||||||||||||| | |||||| || || ||||||||||||||    
T  19943402 ggcttaagttcgtcaacccacttaacccatttctcttgaggggagtgccacccattgaagttgattttgaagggacactcctttgcttc 19943314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 26651916 - 26651632
Alignment:
Q  18 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| || |||   ||||| |||| ||||||||||||    
T  26651916 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaagcaatttgtctcactacaccatttctc 26651817  T
Q  118 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttg 217  Q
    |  || |||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| |||    
T  26651816 agaaatcccataaaccaagtcttgatttttcattacgcggctcttagtactcattataggttcaaagatgccggcttttttccacactgattcatacttg 26651717  T
Q  218 agctgaagttcatcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
     ||| ||||| |||||||||||||| |||||||   ||||||||  ||||||  |||||| |||||||||||||||| |||||||    
T  26651716 ggcttaagttgatcaacccacttaacccatttcgtgtgtgggtaacgccaccagttgaaacggattttcaaaggccattcctttg 26651632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 32 - 302
Target Start/End: Complemental strand, 19818426 - 19818156
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 131  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||| |||| || |||||||| || ||||||||||||||||||||||||||| | |    
T  19818426 ccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaaccccaaata 19818327  T
Q  132 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 231  Q
     ||||| ||| ||||||   ||| |||  ||||||||||| ||||  |||||||| | |||||| |||||||| |||||||| ||  | | |||||||||    
T  19818326 gcaagttttgatttttatgaatgtagcatttagtactcataatagcatcaaagattctagctttcttccacacagattcatactttggtttaagttcatc 19818227  T
Q  232 aacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
    ||||||  ||| ||||||||||||| | | | |||| ||||||||||| ||||||||||| ||||| ||||    
T  19818226 aacccaactaaaccatttctcttgttgttggcgccatccattgaaatgtattttcaaaggacactcatttg 19818156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 20005234 - 20005351
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 131  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  20005234 ccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaacaatcccacaaa 20005333  T
Q  132 ccaagtcttggtttttaa 149  Q
    |||||||||| |||||||    
T  20005334 ccaagtcttgatttttaa 20005351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 19853381 - 19853171
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 131  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||| | ||||| || || || || ||| |||||||||| |||||||||||||| |    
T  19853381 ccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgtattggtctcagaacaccatttgtcaacaaccccacata 19853282  T
Q  132 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 231  Q
     ||||| ||| | |||  |||||||||||||||||||||| ||||  |||||||| | | |||| ||||| |  |||||||||||||| ||||||| |||    
T  19853281 acaagttttgatctttctttatgcagctcttagtactcataatagcatcaaagattccaactttcttccatagtgattcatatttgagttgaagttgatc 19853182  T
Q  232 aacccacttaa 242  Q
    |||||||||||    
T  19853181 aacccacttaa 19853171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 297
Target Start/End: Complemental strand, 19812149 - 19811884
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 131  Q
    ||||||||||| || | ||||||||||||||| ||||||||||||||| |||| || |||||||| || ||||||||||||||||||||||||||| | |    
T  19812149 ccccccaaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaaccccaaaga 19812050  T
Q  132 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 231  Q
     ||| | | | ||||| | ||||   | ||| |||||||| ||||  |||||||| | |||||| |||||||  |||||||| ||  | | ||| |||||    
T  19812049 gcaattttagatttttgagtatgtgacacttggtactcataatagcatcaaagattctagctttcttccacaaagattcatactttggtttaagctcatc 19811950  T
Q  232 aacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactc 297  Q
    ||||||  ||| ||| |||||||||||||   |||| ||| ||||||||||||||||||| |||||    
T  19811949 aacccatctaacccacttctcttgtgggtgacgccatccactgaaatggattttcaaaggacactc 19811884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 302
Target Start/End: Complemental strand, 26646879 - 26646609
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 131  Q
    ||||||||||| |||| |||||||||||| || ||||||||||||||   || ||| ||||| ||||| |||||||||||||||||||| |||||| | |    
T  26646879 ccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaactaccccatata 26646780  T
Q  132 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 231  Q
     |||||| || ||||||  ||||| || | | || | |||||| | ||||||||||| | |||| |||||||| | |||||||||||| | ||||| |||    
T  26646779 gcaagtcatgatttttatgtatgcggcaccttgtgcccattattgcttcaaagatgccaactttcttccacactgtttcatatttgagtttaagttgatc 26646680  T
Q  232 aacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
    ||||||  ||| ||||||  |  |||||    |||| ||| |||| | |||||||||||||||||||||||    
T  26646679 aacccatctaacccatttggcgcgtgggcgacgccaaccagtgaagttgattttcaaaggccactcctttg 26646609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 19989391 - 19989186
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 131  Q
    ||||| ||||| || ||||| ||||||||||| ||||| ||||||||| |||| || || |||||||| ||||||||||||||||||||||||||| | |    
T  19989391 ccccctaaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaaata 19989292  T
Q  132 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 231  Q
     |||||  || | |||  ||||||| | ||| |||||||| |||| ||||||||||| | |||| ||||||||  ||||| ||||| | | ||||| |||    
T  19989291 gcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacatattcaaatttgggtttaagttgatc 19989192  T
Q  232 aaccca 237  Q
    ||||||    
T  19989191 aaccca 19989186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 19857954 - 19857723
Alignment:
Q  18 caaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtt-tgtttcacaacaccatttct 116  Q
    ||||||||||||| ||||||||||| |  |||||||| | ||| |||||||||||||||||  |||||||||| || ||  || ||| |||||||||| |    
T  19857954 caaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgt 19857855  T
Q  117 caacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatattt 216  Q
    ||||||||||| ||||||||| | | | ||| ||||||| ||  ||||||||| | ||||  ||||| ||   |||||| |||||||| |||||||||||    
T  19857854 caacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagctttcttccacacagattcatattt 19857755  T
Q  217 gagctgaagttcatcaacccacttaatccatt 248  Q
      | |||||||  ||||||||||||| |||||    
T  19857754 tggttgaagttggtcaacccacttaacccatt 19857723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 19955944 - 19955790
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 131  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| || || ||||| ||||||||||||||||||||||| ||| | |    
T  19955944 ccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtatttgtctcacaacaccatttctcaacaactccaaata 19955845  T
Q  132 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagat 186  Q
     ||||| ||  ||||||   ||| |||  ||||||||||||||||  ||||||||    
T  19955844 gcaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagat 19955790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 19950993 - 19950812
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 131  Q
    ||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||| || || || || |||  |||||||||||||||||||||| |||    
T  19950993 ccccccaaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaatgtattggtctcagtacaccatttctcaacaaccccaaaaa 19950894  T
Q  132 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcata 213  Q
     |||||  || ||||||  |||   ||| ||||||||||| ||||  |||||||| | |||||| |||||||| ||||||||    
T  19950893 gcaagttatgatttttatgtattatgcttttagtactcataatagcatcaaagattccagctttcttccacacagattcata 19950812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 19838253 - 19838162
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaac 123  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| || || || || ||||| |||||||||||||||||    
T  19838253 ccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtattggtctcacagcaccatttctcaacaac 19838162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 19848844 - 19848675
Alignment:
Q  44 atgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggt 143  Q
    |||| ||||||||||||||||||||||||||||||   |||||| ||||| ||||| | |  ||||||||||||||| ||||||   | ||||| ||| |    
T  19848844 atgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatttgtattaggacaccatttctcaactaccccaactagcaagttttgat 19848745  T
Q  144 ttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcata 213  Q
    ||||| ||| | ||| ||||||   ||| ||||  |||||||| | | |||| |||||||| ||||||||    
T  19848744 ttttatttaagtagcacttagtggccataatagcatcaaagattccaactttcttccacacagattcata 19848675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 20016451 - 20016718
Alignment:
Q  35 cccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaacca 134  Q
    |||||||| || | |||||||||||||||||| |||||| ||||| ||||||| || || ||||| | | |||||||||||||  ||||| || | | ||    
T  20016451 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagca 20016550  T
Q  135 agtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatcaac 234  Q
    ||| ||| ||| | | |||||  | ||| || ||||| ||||  |||||||| | | | |  |||||||| |||||||| ||    | ||| | ||||||    
T  20016551 agttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccacacagattcatactttgttttaagctgatcaac 20016650  T
Q  235 ccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
    |||   || |||||| |||||||||| | |||||||| ||||||| |  ||||||||| |||||||||    
T  20016651 ccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttg 20016718  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 20045989 - 20045898
Alignment:
Q  35 cccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccc 126  Q
    ||||||||||||| ||||||||| || |||||||  ||||||||  |||| |  || || ||||| ||||||||||||||||| ||||||||    
T  20045989 cccaaaacaatgatatcctccaaggttattgttgtctcaccaaagggaaaaataaatgtatttgtatcacaacaccatttctccacaacccc 20045898  T

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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 32 - 302
Target Start/End: Complemental strand, 9814906 - 9814636
Alignment:
Q  32 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 131  Q
    ||||||||||| || |||||||||||| | || || || ||||||||  ||||||| || || || || | ||||||||||||||||||||||||| | |    
T  9814906 ccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtcttacaacaccatttctcaacaaccccatata 9814807  T
Q  132 ccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatc 231  Q
     ||||| ||| | ||| ||||||| || ||| |||||||||||||  |||||||| |   |||| |||||||  |||||||| ||  | | ||||| |||    
T  9814806 gcaagttttgatctttcattatgcggcacttggtactcattatagcatcaaagatacctactttcttccacaaagattcatactttggtttaagttgatc 9814707  T
Q  232 aacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
    |||||| | |||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||| ||||    
T  9814706 aacccaataaatccatttctcttgtgggtaacgccatccattgaaatggaatttcaaaggccactcatttg 9814636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 237
Target Start/End: Original strand, 26355215 - 26355381
Alignment:
Q  71 tcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactca 170  Q
    ||||||||  ||||||| || || || || ||||||||||||||||| ||||||||  ||| ||||| ||| ||||| | ||||| ||  || |||||||    
T  26355215 tcaccaaacggaaacacaaatgtattagtctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatgcggcatttggtactca 26355314  T
Q  171 ttataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatcaaccca 237  Q
    ||||||  ||||| || | |||||| ||||| |||| |||||||||||||| ||||| |||||||||    
T  26355315 ttatagcatcaaaaatcccagctttcttccaaaccggttcatatttgagcttaagttgatcaaccca 26355381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 38435381 - 38435523
Alignment:
Q  33 cccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaac 132  Q
    |||||||||| |||| ||| || ||||||||||||||| |||||| | ||||||| || || || || | ||||||||||||||||||||||| | | |     
T  38435381 cccccaaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtattggtcttacaacaccatttctcaacaaccctaaataa 38435480  T
Q  133 caagtcttggtttttaattatgcagctcttagtactcattata 175  Q
    |||||  || ||||||  |||| |||  |||||||||||||||    
T  38435481 caagttatgatttttatgtatgtagcatttagtactcattata 38435523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 2319480 - 2319553
Alignment:
Q  229 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
    ||||||||| | ||||||||||||||||||||   |||| ||||||||||||| ||||||||||||||| ||||    
T  2319480 atcaacccaataaatccatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactcatttg 2319553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 49 - 294
Target Start/End: Complemental strand, 1717066 - 1716818
Alignment:
Q  49 atcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggttttta 148  Q
    |||||||||||||||||| |||||||||||  ||||||| || || ||||| |||||||||||||| ||||||| |||| | | ||||| ||| |||||     
T  1717066 atcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgtatttgtctcacaacaccatttttcaacaatcccatataacaagttttgatttttc 1716967  T
Q  149 attat---gcagctcttagtactcattataggttcaaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatcaacccacttaatcc 245  Q
     ||||    |  | ||| || |||||||||| ||||||||||| | |||| |||||||| | ||||| |||||| | |||||||||||||||||||  ||    
T  1716966 tttatacgacgacacttggtgctcattatagcttcaaagatgccaactttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatccc 1716867  T
Q  246 atttctcttgtgggtagtgccacccattgaaatggattttcaaaggcca 294  Q
    ||||    | | | | | |||||||||||||||||||||||||||||||    
T  1716866 attttgagttttgttggcgccacccattgaaatggattttcaaaggcca 1716818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 34408323 - 34408492
Alignment:
Q  19 aaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcacc-aaatagaaacacgaaggtgtttgtttcacaacaccatttctc 117  Q
    |||| ||||||| ||| ||||||| || ||||| ||||||||||||||| | ||||| ||| | |||||| ||||| ||||| ||||||||| ||| |||    
T  34408323 aaagtgagagtatccctccaaaaccatcacatcatccaaagtgattgttccatcacctaaagaaaaacacaaaggtatttgtctcacaacactattactc 34408422  T
Q  118 aacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattataggttcaaagatg 187  Q
     |||| || | || | |||||||| |||||  ||||||| |||| |||||||||||||| || |||||||    
T  34408423 gacaatcctataatcgaagtcttgatttttctttatgcaactctaagtactcattatagctttaaagatg 34408492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 48259460 - 48259533
Alignment:
Q  229 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
    ||||||||| | ||||||||||||||||||||   |||| ||||||||||||| ||||||||||||||| ||||    
T  48259460 atcaacccaataaatccatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactcatttg 48259533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 45887493 - 45887566
Alignment:
Q  229 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
    ||||||||| | ||| ||||||||||||||||   |||| ||||||||||||| ||||||||||||||| ||||    
T  45887493 atcaacccaataaatacatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactcatttg 45887566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 47331787 - 47331714
Alignment:
Q  229 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
    ||||||||| | ||||||||||||||||||||   |||| ||||||||||||| |||||||| |||||| ||||    
T  47331787 atcaacccaataaatccatttctcttgtgggtgacgccatccattgaaatggaatttcaaagaccactcatttg 47331714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 55864472 - 55864545
Alignment:
Q  229 atcaacccacttaatccatttctcttgtgggtagtgccacccattgaaatggattttcaaaggccactcctttg 302  Q
    ||||||||| | ||||||||||||||||||||   |||| ||||||||||||| ||||||||||||||| ||||    
T  55864472 atcaacccaataaatccatttctcttgtgggtgacgccaaccattgaaatggaatttcaaaggccactcatttg 55864545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 6397983 - 6398033
Alignment:
Q  28 gtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaa 78  Q
    |||| ||||||| ||||||| |||||||||||| |||||||| ||||||||    
T  6397983 gtagacccccaagacaatgatatcctccaaagttattgttgcctcaccaaa 6398033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 22652364 - 22652432
Alignment:
Q  59 gtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccca 127  Q
    ||||| ||||| ||||||||| ||||||| || | |||||| ||||| |||||||||||||||||||||    
T  22652364 gtgatagttgcctcaccaaatggaaacacaaatgagtttgtctcacagcaccatttctcaacaacccca 22652432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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