View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_46 (Length: 281)
Name: NF1484_high_46
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 1006995 - 1007271
Alignment:
| Q |
1 |
ttccctgcttttgcattccgcatttaacactcatttttgtgtatagccatatcaccttgnnnnnnn-atgctgttcacggaattctaaacatgtttatta |
99 |
Q |
| |
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||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||| |
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| T |
1006995 |
ttccctgctcttgcactccgcatttaacactcgtttttgtgtatagccatgtcaccttgttttttttatgttgttcacggaattctaaatatgtttatta |
1007094 |
T |
|
| Q |
100 |
ctccctccgtctcaaattatgtcgttttgataaaa-cttgttttaaattttatgtcgttttacaatatacttcaatgttcatgattggtgatagtgcaat |
198 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1007095 |
cttcctccgtctcaaattatgtcgttttgataaaaacttgttttaaattttatgtcgttttacaatatacttcaatgttcatgattggtgatagtgcaat |
1007194 |
T |
|
| Q |
199 |
agcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgtt |
275 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1007195 |
agcttggtcatctaaaaagcaacctatagttactctcttcactactgaagcagaatatgttgcagcagcttcatgtt |
1007271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 16866241 - 16866345
Alignment:
| Q |
174 |
tgttcatgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatg |
273 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||| || |||||||||| ||||||||||||||||||||||| |
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| T |
16866241 |
tgttcatgattggtgatagtgcaatagcctggccatctaaaaagcagcctatagttactctttctactactgaagttgaatatgttgcagcagcttcatg |
16866340 |
T |
|
| Q |
274 |
ttcat |
278 |
Q |
| |
|
||||| |
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|
| T |
16866341 |
ttcat |
16866345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 20545210 - 20545310
Alignment:
| Q |
178 |
catgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttca |
277 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20545210 |
catgatttgtgatagtacaatagcttggtcatctaaaaagcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttca |
20545309 |
T |
|
| Q |
278 |
t |
278 |
Q |
| |
|
| |
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|
| T |
20545310 |
t |
20545310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 42971685 - 42971748
Alignment:
| Q |
201 |
cttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagc |
264 |
Q |
| |
|
||||||||||||||| ||| |||| || ||||| ||||||||||||||||||| ||| ||||| |
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|
| T |
42971685 |
cttggtcatctaaaaaacaagctattgtaactctgtccactactgaagcagaatttgtagcagc |
42971748 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 40610107 - 40610007
Alignment:
| Q |
178 |
catgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatgttca |
277 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
40610107 |
catgattggtgatagtgcaataacttggtcatctaaaaaacaatctatagttactctctccactactgaagcataatatgttgcagcaacttcatgttca |
40610008 |
T |
|
| Q |
278 |
t |
278 |
Q |
| |
|
| |
|
|
| T |
40610007 |
t |
40610007 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 27888108 - 27888009
Alignment:
| Q |
174 |
tgttcatgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatg |
273 |
Q |
| |
|
|||| |||||||| ||| |||||||| |||||||||| |||| ||| ||||||||||||| ||||| | |||||| || ||||||||||||| ||||| |
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| T |
27888108 |
tgtttatgattggagatggtgcaatatcttggtcatcaaaaaagcagcctatagttactccttccaccattgaagctgaggatgttgcagcagcgtcatg |
27888009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 27946766 - 27946667
Alignment:
| Q |
174 |
tgttcatgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatg |
273 |
Q |
| |
|
|||| |||||||| ||| |||||||| |||||||||| |||| ||| ||||||||||||| ||||| | |||||| || ||||||||||||| ||||| |
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| T |
27946766 |
tgtttatgattggagatggtgcaatatcttggtcatcaaaaaagcagcctatagttactccttccaccattgaagctgaggatgttgcagcagcgtcatg |
27946667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 28027009 - 28026910
Alignment:
| Q |
174 |
tgttcatgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatg |
273 |
Q |
| |
|
|||| |||||||| ||| |||||||| |||||||||| |||| ||| ||||||||||||| ||||| | |||||| || ||||||||||||| ||||| |
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| T |
28027009 |
tgtttatgattggagatggtgcaatatcttggtcatcaaaaaagcagcctatagttactccttccaccattgaagctgaggatgttgcagcagcgtcatg |
28026910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 47144527 - 47144631
Alignment:
| Q |
174 |
tgttcatgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatg |
273 |
Q |
| |
|
|||| ||| |||||||| | |||||||| ||||||||||||| ||| |||||||||||||| || |||||||||||||| ||| | |||||||||||||| |
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| T |
47144527 |
tgtttatggttggtgatggagcaatagcctggtcatctaaaaagcagcctatagttactctttctactactgaagcagagtatttagcagcagcttcatg |
47144626 |
T |
|
| Q |
274 |
ttcat |
278 |
Q |
| |
|
|||| |
|
|
| T |
47144627 |
ctcat |
47144631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 5144349 - 5144250
Alignment:
| Q |
174 |
tgttcatgattggtgatagtgcaatagcttggtcatctaaaacgcaacctatagttactctctccactactgaagcagaatatgttgcagcagcttcatg |
273 |
Q |
| |
|
|||| ||||| || ||| |||||||||||| ||||||||| | ||| |||||||||||||| ||||| ||||| | || |||||||||| ||||||||| |
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|
| T |
5144349 |
tgtttatgatcggggatggtgcaatagctttgtcatctaagaagcagcctatagttactctttccaccactgaggttgagtatgttgcagtagcttcatg |
5144250 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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