View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_49 (Length: 269)
Name: NF1484_high_49
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 16017967 - 16018204
Alignment:
| Q |
16 |
atgttgaagcagcctcaatcaaccaagtgtagcgaattagacaagttagtgcaaacaatatctccattatgaagcattgagactgatacagacatcagac |
115 |
Q |
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| T |
16017967 |
atgttgaagcagcctcaatcaaccaagtgtagcgaattagacaagttagtgcaaacaatatctccattatgaagcattgagactgatacagacatcagac |
16018066 |
T |
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| Q |
116 |
acagcactgacattgacacgtacacattgttaagaaaataaaagtgattaaatgtaaccacgtgttggtgtcggaacactgacacgagtcggacacaaga |
215 |
Q |
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| T |
16018067 |
acaacactgacattgacacgtacacactgttaagaaaataaaagtgattaaatgtaaccacgtgttggtgtctgaacactgacacggatcggacacaaga |
16018166 |
T |
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| Q |
216 |
catgtctttaatctaaagcttcagtgctgcataaatct |
253 |
Q |
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| T |
16018167 |
catgtctttaatctaaagcttcagtgctgcataaatct |
16018204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 3943765 - 3943801
Alignment:
| Q |
145 |
ttaagaaaataaaagtgattaaatgtaaccacgtgtt |
181 |
Q |
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| T |
3943765 |
ttaagaaaataaaagtgattgaatgtaaccacatgtt |
3943801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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