View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_58 (Length: 248)
Name: NF1484_high_58
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 23701404 - 23701638
Alignment:
| Q |
2 |
gactgtaatttctttgattnnnnnnnttgtaatggatccaagccgccaccacatattcactagtagtcgaaatatagagttgtattatatgataaaattt |
101 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23701404 |
gactgtaatttctttgattaaaaaaattgtaatggatccaagccgccaccacatattcactagttgtcgaaatatagagttgtattatatgataaaattt |
23701503 |
T |
|
| Q |
102 |
aggtttttctttcacttcaaatgatgatcattgaatattgaaaaatgggtaactcgacctacttcgactcggcccaatccgagttgtatggtgtagtgct |
201 |
Q |
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| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23701504 |
aagtttttctttcacttcaagtgatgatcattgaatattgaaaaatgggtaactcgacctccttcgactcggcccaatccgagttgtatggtgtagtgct |
23701603 |
T |
|
| Q |
202 |
aaaaatatttttcatatgggtttttgtgtcattca |
236 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
23701604 |
aaaaatatttttcatatgggtttttgtgtcattca |
23701638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 23719859 - 23720093
Alignment:
| Q |
2 |
gactgtaatttctttgattnnnnnnnttgtaatggatccaagccgccaccacatattcactagtagtcgaaatatagagttgtattatatgataaaattt |
101 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23719859 |
gactgtaatttctttaattaaaaaaattgtaatggatccaagccgccaccacatattcactagttgtcgaaatatagagttgtattatatgataaaattt |
23719958 |
T |
|
| Q |
102 |
aggtttttctttcacttcaaatgatgatcattgaatattgaaaaatgggtaactcgacctacttcgactcggcccaatccgagttgtatggtgtagtgct |
201 |
Q |
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| T |
23719959 |
aagtttttctttcacttcaagtgatgatcattgaatattgaaaaatgggtaactcgacctccttcgactcggcccaatccgagttgtatggtgtagtgct |
23720058 |
T |
|
| Q |
202 |
aaaaatatttttcatatgggtttttgtgtcattca |
236 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
23720059 |
aaaaatatttttcatatgggtttttgtgtcattca |
23720093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 23738315 - 23738549
Alignment:
| Q |
2 |
gactgtaatttctttgattnnnnnnnttgtaatggatccaagccgccaccacatattcactagtagtcgaaatatagagttgtattatatgataaaattt |
101 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23738315 |
gactgtaatttctttaattaaaaaaattgtaatggatccaagccgccaccacatattcactagttgtcgaaatatagagttgtattatatgataaaattt |
23738414 |
T |
|
| Q |
102 |
aggtttttctttcacttcaaatgatgatcattgaatattgaaaaatgggtaactcgacctacttcgactcggcccaatccgagttgtatggtgtagtgct |
201 |
Q |
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| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23738415 |
aagtttttctttcacttcaagtgatgatcattgaatattgaaaaatgggtaactcgacctccttcgactcggcccaatccgagttgtatggtgtagtgct |
23738514 |
T |
|
| Q |
202 |
aaaaatatttttcatatgggtttttgtgtcattca |
236 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
23738515 |
aaaaatatttttcatatgggtttttgtgtcattca |
23738549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 23770803 - 23770903
Alignment:
| Q |
137 |
tattgaaaaatgggtaactcgacctacttcgactcggcccaatccgagttgtatggtgtagtgctaaaaatatttttcatatgggtttttgtgtcattca |
236 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23770803 |
tattgaaaaatcggtaactcggcctacttcgactcggcccaatccgagttgtatggtgttgtgctaaaaatatttttcatatgggtttttgtgtcattca |
23770902 |
T |
|
| Q |
237 |
t |
237 |
Q |
| |
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| |
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|
| T |
23770903 |
t |
23770903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 23770514 - 23770628
Alignment:
| Q |
29 |
tgtaatggatccaagccgccaccacatattcactagtagtcgaaatata--gagttgtatt-atatgataaaatttaggtttttctttcacttcaaatga |
125 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
23770514 |
tgtaatggatccaagccgccaccacatattcactagttgtcgaaatatatagagttgtatttatatgataaaatttaggtttttccttcacttcaagtga |
23770613 |
T |
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| Q |
126 |
tgatcattgaatatt |
140 |
Q |
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||||||||||||||| |
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| T |
23770614 |
tgatcattgaatatt |
23770628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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