View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_59 (Length: 245)
Name: NF1484_high_59
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_59 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 2124 - 1917
Alignment:
| Q |
20 |
gtattattagtgttttcttcgttctgcttttctgttttggattggcagctttgttcctggcttctatggatgttttgtctttcttaatataacatcgtga |
119 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
2124 |
gtattattagtgttttcttcgttctgcttttctgatttggattggcagctttgttcctggcttctatggatgttttgtctgtcttaatataacattgtga |
2025 |
T |
|
| Q |
120 |
ttcgtgacaaggt-ttttctttcgtggctgctatctttgtggtgtgtctgactggctttggcttccgtgtgttgtttggctgttattttggatgttttag |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2024 |
ttcgtgacaaggttttttctttcgtggctgctatctttgtggtgtgtctgtctggctttggcttccgtgtgttgtttggctgttattttggatgttttag |
1925 |
T |
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| Q |
219 |
cttagctg |
226 |
Q |
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|||||||| |
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| T |
1924 |
cttagctg |
1917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 41974816 - 41974609
Alignment:
| Q |
20 |
gtattattagtgttttcttcgttctgcttttctgttttggattggcagctttgttcctggcttctatggatgttttgtctttcttaatataacatcgtga |
119 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
41974816 |
gtattattagtgttttcttcgttctgcttttctgatttggattggcagctttgttcctggcttctatggatgttttgtctgtcttaatataacattgtga |
41974717 |
T |
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| Q |
120 |
ttcgtgacaaggt-ttttctttcgtggctgctatctttgtggtgtgtctgactggctttggcttccgtgtgttgtttggctgttattttggatgttttag |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41974716 |
ttcgtgacaaggttttttctttcgtggctgctatctttgtggtgtgtctgtctggctttggcttccgtgtgttgtttggctgttattttggatgttttag |
41974617 |
T |
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| Q |
219 |
cttagctg |
226 |
Q |
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|||||||| |
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| T |
41974616 |
cttagctg |
41974609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 1223028 - 1223177
Alignment:
| Q |
20 |
gtattattagtgttttcttcgttctgcttttctgttttggattggcagctttgttcctggcttctatggatgttttgtctttcttaatataacatcgtga |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
1223028 |
gtattattagtgttttcttcgttctgcttttctgttttggattggcagctttgttcctgacttctatggatgttttgtctgtcttaatataacatcgtga |
1223127 |
T |
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| Q |
120 |
ttcgtgacaagg-tttttctttcgtggctgctatctttgtggtgtgtctg |
168 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1223128 |
tttgtgacaaggttttttctttcgtggctgctatctttgtggtgtgtctg |
1223177 |
T |
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