View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484_high_6 (Length: 562)
Name: NF1484_high_6
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_6 |
 | |
|
| [»] scaffold0248 (1 HSPs) |
| | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
| [»] scaffold0007 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 109 - 503
Target Start/End: Original strand, 19877869 - 19878263
Alignment:
| Q |
109 |
ggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatact |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19877869 |
ggtgaggcttagcctacctttacaaacacatggccaatttacccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatact |
19877968 |
T |
|
| Q |
209 |
tattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccagac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
19877969 |
tattatttagttttataaattgtaaccatatacttttgttattttgcagatttacccaagcattaattaagttttatcttctcaaaaaaattgtccagac |
19878068 |
T |
|
| Q |
309 |
tacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtca |
408 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
19878069 |
tacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatca |
19878168 |
T |
|
| Q |
409 |
aattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactc |
503 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19878169 |
aattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccgtaagaaactcatctctgtcacgaaactc |
19878263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 325 - 501
Target Start/End: Complemental strand, 19880054 - 19879878
Alignment:
| Q |
325 |
gttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatccatcgtat |
424 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19880054 |
gttttcatctttcaatttttcaacccaaccattgcttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatcaaattcatccatcgtat |
19879955 |
T |
|
| Q |
425 |
ttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19879954 |
ttactctccactcataccgtttcttctctctcatctttggggaaaatgccgtaagaaactcatctctgtcacgaaac |
19879878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 19880153 - 19880090
Alignment:
| Q |
340 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
401 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
19880153 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
19880090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 107 - 512
Target Start/End: Complemental strand, 13434873 - 13434468
Alignment:
| Q |
107 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13434873 |
aaggtgaggcctagcctacctttacaaacacatgggcaatttacccatgtatcttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
13434774 |
T |
|
| Q |
207 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
13434773 |
cttattatttagttttataaattgtaaccatatacttttgttattttacagatttacccaagcattaattaagttttatcttctaaaaaaaattgtccag |
13434674 |
T |
|
| Q |
307 |
actacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgt |
406 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
13434673 |
actacattctgcttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacat |
13434574 |
T |
|
| Q |
407 |
caaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactcatc |
506 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13434573 |
caaattcatccatcgtatttactctccactcataccgtttattctctttcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactcatc |
13434474 |
T |
|
| Q |
507 |
tctaag |
512 |
Q |
| |
|
||||| |
|
|
| T |
13434473 |
cctaag |
13434468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 319 - 542
Target Start/End: Original strand, 13432761 - 13432985
Alignment:
| Q |
319 |
ttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatcca |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
13432761 |
ttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttggtaaaaaattgattcatcaacatcaaattcatcca |
13432860 |
T |
|
| Q |
419 |
tcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactcatctctaag-nnnnn |
517 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
13432861 |
tcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaacccatccctaagtttttt |
13432960 |
T |
|
| Q |
518 |
nncgtttcactctctcacggttcta |
542 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13432961 |
ttcgtttcactctctcacggttcta |
13432985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 13432679 - 13432731
Alignment:
| Q |
351 |
aaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
401 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
13432679 |
aaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
13432731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 109 - 541
Target Start/End: Original strand, 11536806 - 11537238
Alignment:
| Q |
109 |
ggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatact |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11536806 |
ggtgaggcctagcctacctttacaaacacatgggcaatttacccatataacttaacaaaaataaaaagcagccacgtatactcattatatttgaaatact |
11536905 |
T |
|
| Q |
209 |
tattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccagac |
308 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
11536906 |
tattatttagttttataaattataaccatatacttttgttattttgcagatttacccaagcattaattaagttttatcttctcaaaaaaattgtccagac |
11537005 |
T |
|
| Q |
309 |
tacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtca |
408 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
11537006 |
tacattctgcttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatca |
11537105 |
T |
|
| Q |
409 |
aattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactcatctc |
508 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
11537106 |
aattcatctatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctttgtcacgaaactcatccc |
11537205 |
T |
|
| Q |
509 |
taagnnnnnnncgtttcactctctcacggttct |
541 |
Q |
| |
|
|||| ||||||||| |||||||||||| |
|
|
| T |
11537206 |
taagtttttttcgtttcactttctcacggttct |
11537238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 106 - 501
Target Start/End: Original strand, 46042527 - 46042921
Alignment:
| Q |
106 |
gaaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
46042527 |
gaaggtgaggcctagcctacctttacaaacatatgggcaattcacccatgtaacttaacaataataaaaaacagccacatatactcattgtatttgaaat |
46042626 |
T |
|
| Q |
206 |
acttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtcca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| || | || |
|
|
| T |
46042627 |
acttattatttagttttataaattgtaaccatatacttttgttattttgcagatttacctaagcattaattaagttttatcttctcaaaaaaattattca |
46042726 |
T |
|
| Q |
306 |
gactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacg |
405 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
46042727 |
-actacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatctattcgtaatttgggaaaaaattgattcatcaaca |
46042825 |
T |
|
| Q |
406 |
tcaaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46042826 |
tcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacaaaac |
46042921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 107 - 291
Target Start/End: Original strand, 29531699 - 29531883
Alignment:
| Q |
107 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29531699 |
aaggtgaggcctaacctacctttacaaacacatgggcaatttaccgatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
29531798 |
T |
|
| Q |
207 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29531799 |
cttattatttagttttataaattgtaaccatatacttttgttattttgtagatttacccaagcattaattaagttttatcttctc |
29531883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 322 - 542
Target Start/End: Complemental strand, 29532737 - 29532516
Alignment:
| Q |
322 |
tgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaat-tgattcatcaacgtcaaattcatccatc |
420 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
29532737 |
tgtgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaaaatgattcatcaacatcaaattcatccatc |
29532638 |
T |
|
| Q |
421 |
gtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactcatctctaagnnnnnnnc |
520 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
29532637 |
gtatttactctccacccataccgtttcttctctctcgtctttggggaaaatgccctaagaaactcatctctgtcacgaaacccatccctaagtttttttc |
29532538 |
T |
|
| Q |
521 |
gtttcactctctcacggttcta |
542 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29532537 |
gtttcactctctcacggttcta |
29532516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 326 - 500
Target Start/End: Complemental strand, 46044412 - 46044238
Alignment:
| Q |
326 |
ttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatccatcgtatt |
425 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46044412 |
ttttcatctttcaatttttcaacccaatcattacttccttcaatccatttgtaatttggaaaaaaattgattcatcaacatcaaattcatccatcgtatt |
46044313 |
T |
|
| Q |
426 |
tacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaa |
500 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46044312 |
tactctccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgttacgaaa |
46044238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 46044512 - 46044449
Alignment:
| Q |
340 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
401 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
46044512 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
46044449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 29532822 - 29532770
Alignment:
| Q |
351 |
aaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
401 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
29532822 |
aaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
29532770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 107 - 542
Target Start/End: Original strand, 8203725 - 8204152
Alignment:
| Q |
107 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8203725 |
aaggtgaggcctagcctacctttacaaacacatgggcaatttacccatgtaacttaacaataataaaaagcagccacgtat--tcattgtatttgaaata |
8203822 |
T |
|
| Q |
207 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccag |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8203823 |
cttattatttagttttataaattgtgaccatatacttttattattttgcagatttacccaaacattaattaagttttatcttctcaaaaaaattgtccag |
8203922 |
T |
|
| Q |
307 |
actacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgt |
406 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
8203923 |
actacattctgcttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaattgattca------t |
8204016 |
T |
|
| Q |
407 |
caaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactcatc |
506 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8204017 |
caaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaacccatc |
8204116 |
T |
|
| Q |
507 |
tctaagnnnnnnncgtttcactctctcacggttcta |
542 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |
|
|
| T |
8204117 |
cctaagtttttttcgtttcactctctaacggttcta |
8204152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 104 - 542
Target Start/End: Complemental strand, 22974610 - 22974172
Alignment:
| Q |
104 |
ttgaaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaa |
203 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22974610 |
ttgaaggtgaggtatagcctacctttataaacacatgggcaatttacccatgtaacttaacaataataaaaagcagctacgtatactcattgtatttgaa |
22974511 |
T |
|
| Q |
204 |
atacttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtc |
303 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
22974510 |
atacttattatttagtttcataaattgtaaccatatacttttgttattttgcagatttacccaagcattaattaagttttatcttctcaaaaaaattgtc |
22974411 |
T |
|
| Q |
304 |
cagactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaa |
403 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
22974410 |
cagactacattctgcttctgcgttttcatctttcaatttttcaacccaactatttcttccttcaatccattcgtaatttggaaaaaaattgattcatcaa |
22974311 |
T |
|
| Q |
404 |
cgtcaaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactc |
503 |
Q |
| |
|
| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22974310 |
catcaaattcatccatggtatttactctccactcatatcgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaaccc |
22974211 |
T |
|
| Q |
504 |
atctctaagnnnnnnncgtttcactctctcacggttcta |
542 |
Q |
| |
|
||| |||| ||||||||||||||||||||||| |
|
|
| T |
22974210 |
atccctaaatttttttcgtttcactctctcacggttcta |
22974172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 107 - 501
Target Start/End: Complemental strand, 38084181 - 38083787
Alignment:
| Q |
107 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38084181 |
aaggtgaggcctagcctacctttacagacacatgggcaatttacccatgtaatttaacaataataaaaagcagtcacgtatactcattgtatttgaaata |
38084082 |
T |
|
| Q |
207 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38084081 |
cttattatttagttttataaattgtaaccatatacttttgttattttgcaaatttacccaagcattaattaagttttatcttctcaaaaaaattgtccag |
38083982 |
T |
|
| Q |
307 |
actacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgt |
406 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| | |
|
|
| T |
38083981 |
actacattctacttctgcgttttcatctttcaatttttcaacctaaccgttacttccttcaatccattcgtaatttggaaaaaaattgattcatcaacat |
38083882 |
T |
|
| Q |
407 |
caaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38083881 |
caaattcatccatcgtatttactctccactcatatcatttcttctctctcatctttggagaaaatgccctaagaaactcatctctgtcacgaaac |
38083787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 319 - 540
Target Start/End: Complemental strand, 8205771 - 8205550
Alignment:
| Q |
319 |
ttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatcca |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8205771 |
ttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatcaaattcatcca |
8205672 |
T |
|
| Q |
419 |
tcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactcatctctaagnnnnnn |
518 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
8205671 |
tcgtatttactcttcacttataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaacccatccctaagtttttt |
8205572 |
T |
|
| Q |
519 |
ncgtttcactctctcacggttc |
540 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8205571 |
tcgtttcactctctcacggttc |
8205550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 319 - 512
Target Start/End: Original strand, 22973193 - 22973385
Alignment:
| Q |
319 |
ttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatcca |
418 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22973193 |
ttctgcgttttcatcttccaatttttcaacccaaccat-acttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatcaaattcatcca |
22973291 |
T |
|
| Q |
419 |
tcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactcatctctaag |
512 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
22973292 |
tcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatatcctaagaaactcatctctgtcacgaaacccatccctaag |
22973385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 340 - 501
Target Start/End: Original strand, 38082941 - 38083104
Alignment:
| Q |
340 |
tttttcaacttaaccattacttccttcaatccattcgtaattttggaa--aaaattgattcatcaacgtcaaattcatccatcgtatttacactccactc |
437 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38082941 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatcaacatcaaattcatccatcgtatttactctccactc |
38083040 |
T |
|
| Q |
438 |
ataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38083041 |
ataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
38083104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 1304665 - 1304625
Alignment:
| Q |
109 |
ggtgaggcctagcctacctttacaaacacatggacaattta |
149 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
1304665 |
ggtgaggcctaacctatctttacaaacacatgggcaattta |
1304625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 8205864 - 8205801
Alignment:
| Q |
340 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
401 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
8205864 |
tttttcaacccaactatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
8205801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 22973100 - 22973163
Alignment:
| Q |
340 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
401 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||| |||||| ||| ||||||||||||||| |
|
|
| T |
22973100 |
tttttcaacccaaccatttcttccttcaattcattcataatttgggaacaaaaattgattcatc |
22973163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 111 - 501
Target Start/End: Complemental strand, 15875 - 15479
Alignment:
| Q |
111 |
tgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatactta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15875 |
tgaggcctagcctacctttacaaacacatgggcaatttacccatgtaagttaacaataataaaaagtagccacgtatactcattgtatttgaaatactta |
15776 |
T |
|
| Q |
211 |
ttatttagttttataaat------tgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtcc |
304 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15775 |
ttatttagttttataaatataaattgtaaccatatacttttgttattttgcagatttacccaaacattaattaagttttatcttctcaaaacaattgtcc |
15676 |
T |
|
| Q |
305 |
agactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaac |
404 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
15675 |
agactacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatccatttgtaatttgggaaaaaattgattcatcaac |
15576 |
T |
|
| Q |
405 |
gtcaaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15575 |
atcaaattcatccatcgtatttactctccagtcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
15479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 108 - 501
Target Start/End: Complemental strand, 43515 - 43127
Alignment:
| Q |
108 |
aggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
43515 |
aggtgaggcctagcctacctttacaaatacatgggcaatttaccaatgtaacttaacaataataaaaagcagtcacgtatactcattgtattt-----ac |
43421 |
T |
|
| Q |
208 |
ttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccaga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| | |
|
|
| T |
43420 |
ttattatttagttttataaattgtaaccatatatttttgttattttgcaaatttacccaagcattaattaagttttatcttctcaaaaagattgtccaaa |
43321 |
T |
|
| Q |
308 |
ctacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtc |
407 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
43320 |
ctacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatc |
43221 |
T |
|
| Q |
408 |
aaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43220 |
aaattcatccatcgtatttactctccactcatactgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
43127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 340 - 501
Target Start/End: Original strand, 65333 - 65496
Alignment:
| Q |
340 |
tttttcaacttaaccattacttccttcaatccattcgtaattttggaa--aaaattgattcatcaacgtcaaattcatccatcgtatttacactccactc |
437 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
65333 |
tttttcaacccaaccatttattccttcaatccattcataatttgggaacaaaaattgattcatcaacatcaaattcatccatcgtatttactctccactc |
65432 |
T |
|
| Q |
438 |
ataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
65433 |
ataccatttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
65496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 108 - 501
Target Start/End: Original strand, 40906503 - 40906891
Alignment:
| Q |
108 |
aggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
40906503 |
aggtgaggcctagcctacctttacaaatacatgggcaatttaccaatgtaacttaacaataataaaaagcagtcacgtatactcattgtattt-----ac |
40906597 |
T |
|
| Q |
208 |
ttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccaga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| | |
|
|
| T |
40906598 |
ttattatttagttttataaattgtaaccatatatttttgttattttgcaaatttacccaagcattaattaagttttatcttctcaaaaagattgtccaaa |
40906697 |
T |
|
| Q |
308 |
ctacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtc |
407 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
40906698 |
ctacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatc |
40906797 |
T |
|
| Q |
408 |
aaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40906798 |
aaattcatccatcgtatttactctccactcatactgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
40906891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 277 - 501
Target Start/End: Original strand, 32256517 - 32256741
Alignment:
| Q |
277 |
aagttttatcttctcnnnnnnnttgtccagactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcg |
376 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
32256517 |
aagttttatcttctcaaaaaaattgtccagactacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatctattcg |
32256616 |
T |
|
| Q |
377 |
taattttggaaaaaattgattcatcaacgtcaaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccct |
476 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32256617 |
taatttgcgaaaaaattgattcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttgggaaaaatgccct |
32256716 |
T |
|
| Q |
477 |
aagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
32256717 |
aaaaaactcatctctgtcacgaaac |
32256741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 107 - 282
Target Start/End: Original strand, 32254811 - 32254986
Alignment:
| Q |
107 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
206 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32254811 |
aaggtgaggcctagcttaccattacaaacacatgggcaatttacccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
32254910 |
T |
|
| Q |
207 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
32254911 |
cttattatttagttttataaattgtaaccatatacttttgttattttgtagatttacccaagcattaattaagttt |
32254986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 319 - 501
Target Start/End: Complemental strand, 32257705 - 32257524
Alignment:
| Q |
319 |
ttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatcca |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
32257705 |
ttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaa-ttgattcatcaacatcaaattcatcca |
32257607 |
T |
|
| Q |
419 |
tcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32257606 |
tcgtatttactctccactcatactgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
32257524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 340 - 501
Target Start/End: Complemental strand, 40907761 - 40907598
Alignment:
| Q |
340 |
tttttcaacttaaccattacttccttcaatccattcgtaattttggaa--aaaattgattcatcaacgtcaaattcatccatcgtatttacactccactc |
437 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
40907761 |
tttttcaacccaaccatttattccttcaatccattcataatttgggaacaaaaattgattcatcaacatcaaattcatccatcgtatttactctccactc |
40907662 |
T |
|
| Q |
438 |
ataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
501 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40907661 |
ataccatttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaac |
40907598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 32257798 - 32257735
Alignment:
| Q |
340 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
401 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
32257798 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
32257735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 107 - 503
Target Start/End: Complemental strand, 17772270 - 17771874
Alignment:
| Q |
107 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17772270 |
aaggtgaggcctagcctacctttacaaacacatgggtaatttacccatttaagttaacaataataaaaagcagccacgtatacccattgtatttgaaata |
17772171 |
T |
|
| Q |
207 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
17772170 |
tttattatttagttttataaattgtaaccacatacttttgttattttggagatttacccaagcattaattaagttttatcttctcaaaacaattgtccag |
17772071 |
T |
|
| Q |
307 |
actacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgt |
406 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||| | ||||||||||||||||||| | |
|
|
| T |
17772070 |
actatattctgcttctgtgttttcatctttcaatttttcaacctaatcattactttcttcaatccatttgtaatttggaaaaaaattgattcatcaacat |
17771971 |
T |
|
| Q |
407 |
caaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactc |
503 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17771970 |
caaattcatccatcctatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcatgaaactc |
17771874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 112 - 503
Target Start/End: Complemental strand, 1542217 - 1541826
Alignment:
| Q |
112 |
gaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatacttat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
1542217 |
gaggcctagcctacctttacaaacacatgggtaatttacccatgtaagttaacaataataaaaagtagccacgtatacccattgtatttgaaatatttat |
1542118 |
T |
|
| Q |
212 |
tatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccagactac |
311 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1542117 |
tatttagttttataaattgtaaccacatacttttgttattttggagatttacccaagcattaattaagttttatcttctcaaaacaattgtccagactat |
1542018 |
T |
|
| Q |
312 |
attctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||| || ||||||||||||||||||||| |||||| |
|
|
| T |
1542017 |
attctgcttctgtgttttcatctttcaatttttcaacctaatcattactttcttcaatccatttgtaaattgggaaaaaattgattcatcaacatcaaat |
1541918 |
T |
|
| Q |
412 |
tcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactc |
503 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1541917 |
tcatccatcctatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcatgaaactc |
1541826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 332 - 503
Target Start/End: Original strand, 1533809 - 1533980
Alignment:
| Q |
332 |
tctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatccatcgtatttacact |
431 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
1533809 |
tctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttaggaaaaaattgattcatcaacatcaaattcatccatcgtatttactct |
1533908 |
T |
|
| Q |
432 |
ccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactc |
503 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1533909 |
ccactcataccgtttgttctctctcatctttggggaaaatgccctaagaaactcatctctgtcatgaaactc |
1533980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 332 - 503
Target Start/End: Original strand, 17752019 - 17752190
Alignment:
| Q |
332 |
tctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatccatcgtatttacact |
431 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
17752019 |
tctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttaggaaaaaattgattcatcaacatcaaattcatccatcgtatttactct |
17752118 |
T |
|
| Q |
432 |
ccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacgaaactc |
503 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17752119 |
ccactcataccgtttgttctctctcatctttggggaaaatgccctaagaaactcatctctgtcaagaaactc |
17752190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 199 - 501
Target Start/End: Original strand, 278191 - 278493
Alignment:
| Q |
199 |
ttgaaatacttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnn |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
278191 |
ttgaaatacttattatttagttatataaattgtaaccatatacttttgttattttacagatttacccaagcattaattaagctttatcttctcaaaaaat |
278290 |
T |
|
| Q |
299 |
ttgtccagactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattc |
398 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
278291 |
ttgtccagactacattctgcttctgcgttttcatctttcaatttttcaacctaactattacttccttcaatccattcgtaatttggaaaaaaattgattc |
278390 |
T |
|
| Q |
399 |
atcaacgtcaaattcatccatcgtatttacactccactcataccgtttcttctctctcatctttggggaaaatgccctaagaaactcatctctgtcacga |
498 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
278391 |
atcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccgtaagaaactcatctctgtcacga |
278490 |
T |
|
| Q |
499 |
aac |
501 |
Q |
| |
|
||| |
|
|
| T |
278491 |
aac |
278493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 268203 - 268302
Alignment:
| Q |
109 |
ggtgaggcctagcctacctttacaaacacatggacaatttatcc-atgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
268203 |
ggtgaggcctagcctacctttacaaacacatgggcaatttaccccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
268302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 277905 - 278004
Alignment:
| Q |
109 |
ggtgaggcctagcctacctttacaaacacatggacaatttatccat-gtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277905 |
ggtgaggcctagcctacctttccaaacacatgggcaatttaccccttgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
278004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 25767003 - 25766909
Alignment:
| Q |
129 |
tacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactc-attgtatttgaaatacttattatttagttttat |
224 |
Q |
| |
|
||||||||||||| |||| | ||||||||| ||||| |||||||||||||||| | ||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
25767003 |
tacaaacacatgggcaat--acccatgtaacctaacaccaataaaaagcagccacatgtactccattgtatttgaaatactcattatttaattttat |
25766909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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