View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_60 (Length: 245)
Name: NF1484_high_60
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 43746452 - 43746562
Alignment:
| Q |
1 |
atggcagtgacagtgagtatgggtgagggccacaaaaacacacttcaaatgccaaaacttgcacaccaagtaataaaggagccttgctggcctttgattc |
100 |
Q |
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| T |
43746452 |
atggcagtgacagtgagtatgggtgagggccacaaaaacacacttcaaatgtcaaaacttgcacaccaagtaataaaggagccttgctggcctttgattc |
43746551 |
T |
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| Q |
101 |
aatatttctga |
111 |
Q |
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| T |
43746552 |
aatatttctga |
43746562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 43746563 - 43746609
Alignment:
| Q |
151 |
ctaagccattaaacatgaaagagaaaaaatgagataaaattattaag |
197 |
Q |
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| T |
43746563 |
ctaagccattaaacatgaaagagaaaaaatgagataaaattattaag |
43746609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 24215210 - 24215283
Alignment:
| Q |
119 |
gaaattctctcaatttttgacaattgttatatctaagccattaaacatgaaagagaaaaaatgagataaaatta |
192 |
Q |
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| T |
24215210 |
gaaattttctcaatttttttcaattgtcacatctataccattaaatatgaaagagaaaataagatataaaatta |
24215283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 42553566 - 42553514
Alignment:
| Q |
17 |
gtatgggtgagggccacaaaaacacacttcaaatgccaaaacttgcacaccaa |
69 |
Q |
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| T |
42553566 |
gtatgggcgagggccacaaaaacacactccaaatgacaaaacttgcacaccaa |
42553514 |
T |
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