View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_61 (Length: 244)
Name: NF1484_high_61
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 6250256 - 6250050
Alignment:
| Q |
18 |
aatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccaccatatttgatca |
117 |
Q |
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| T |
6250256 |
aatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccaccatatttgatca |
6250157 |
T |
|
| Q |
118 |
aaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccatgttgatgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6250156 |
aaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccatgttgatgga |
6250057 |
T |
|
| Q |
218 |
aacaatt |
224 |
Q |
| |
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||||||| |
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| T |
6250056 |
aacaatt |
6250050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 39427964 - 39428170
Alignment:
| Q |
18 |
aatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccaccatatttgatca |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
39427964 |
aatataacctgcaactttggcaattccaagtgctagaccaattagggaatatgtgaaagacatgactgcagcaactgatgagagccaccagatttgatca |
39428063 |
T |
|
| Q |
118 |
aaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccatgttgatgga |
217 |
Q |
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| T |
39428064 |
aaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgggcttttgtccccatgttgatgga |
39428163 |
T |
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| Q |
218 |
aacaatt |
224 |
Q |
| |
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||||||| |
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| T |
39428164 |
aacaatt |
39428170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 44315600 - 44315775
Alignment:
| Q |
18 |
aatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccaccatatttgatca |
117 |
Q |
| |
|
||||||||||||||||||||||||| | || | || ||||| |||||||| ||||||||||||| ||| |||||| |||||||||||| |||| |||| |
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| T |
44315600 |
aatataacctgcaactttggcaattgctagtccaaggccaataaaggaataggtgaaagacatgattgctgcaactattgagagccaccacattttatca |
44315699 |
T |
|
| Q |
118 |
aaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatg |
193 |
Q |
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|||||||||||||| |||| ||||||||| || || ||||| ||||||||| | |||||||| |||||||||| |
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| T |
44315700 |
aaatctggaatttgagaaaagaaaatttggattactccaaatgctatcatgtatggattgcttgaaatgtgacatg |
44315775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 44323537 - 44323711
Alignment:
| Q |
19 |
atataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccaccatatttgatcaa |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| ||||| ||| || ||||||||||| |||||||||| |||||||||||| || | || || |
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| T |
44323537 |
atataacctgcaactttggaaattccaagagcaagagcaattgtggagtagaagaaagacatgactgcagcaactattgagagccaccacatgttatgaa |
44323636 |
T |
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| Q |
119 |
aatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatg |
193 |
Q |
| |
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||||||||||||| |||||||||| |||| ||| ||||| ||||||||| |||||| ||| || ||||||| |
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| T |
44323637 |
aatctggaatttgagaaaggaaaagttgtgccacgccaaaagcaatcatgtatgggttgcctgaaatatgacatg |
44323711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 40204276 - 40204242
Alignment:
| Q |
97 |
gagagccaccatatttgatcaaaatctggaatttg |
131 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40204276 |
gagagccaccatatttgatcaaaatctggaatttg |
40204242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 40200775 - 40200741
Alignment:
| Q |
97 |
gagagccaccatatttgatcaaaatctggaatttg |
131 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
40200775 |
gagagccaccataattgatcaaaatctggaatttg |
40200741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 44306139 - 44306237
Alignment:
| Q |
96 |
tgagagccaccatatttgatcaaaatctggaatttgtgaaaggaaaatttgtatcacaccaaacatgatcatgtataggttgcttgacatgtgacatgg |
194 |
Q |
| |
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|||||||||||| | | || ||| ||||||||||| |||| |||||||| || || ||||| |||||||||| |||||||||| ||||||||||| |
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| T |
44306139 |
tgagagccaccacgtattatgaaactctggaatttgagaaacgaaaatttcgattactccaaaaccgatcatgtatgggttgcttgaaatgtgacatgg |
44306237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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