View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_high_65 (Length: 239)

Name: NF1484_high_65
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_high_65
NF1484_high_65
[»] chr1 (2 HSPs)
chr1 (1-195)||(31284134-31284323)
chr1 (194-229)||(44404657-44404692)
[»] chr6 (2 HSPs)
chr6 (195-229)||(35039093-35039127)
chr6 (195-228)||(18310007-18310040)
[»] chr5 (2 HSPs)
chr5 (195-229)||(20337169-20337203)
chr5 (195-229)||(20745701-20745735)
[»] chr4 (2 HSPs)
chr4 (195-229)||(21351352-21351386)
chr4 (192-229)||(36518420-36518457)
[»] chr2 (1 HSPs)
chr2 (196-229)||(5250322-5250355)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 31284323 - 31284134
Alignment:
Q  1 aaaggattgtgtgctcctaaattgatattaaaatctatcttaaattgatcactgaaaagagtaaaaacacaatgaaggaagcaataaggttgcaaactga 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||| | || ||||| |||||| |||||||    
T  31284323 aaaggattgtatgctcctaaattgatattaaaatctatcttaaattgatcgctaaaaagggtaaaaa-acaatggatgaggcaatgaggttgaaaactga 31284225  T
Q  101 aataaatatgggtcatgcttggataaacaagttagttagttacttgcttctaacataagtgtttatcaattaagtgtatatgtatatttctataa 195  Q
    ||||||||||||||||| |||||||||||    ||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||    
T  31284224 aataaatatgggtcatgtttggataaaca----agttagttacttgcttcgaacataagtgtttgtcaattaagtatatatgtatatttctataa 31284134  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 44404657 - 44404692
Alignment:
Q  194 aatctacttactatattctaaaattaaatgcctatg 229  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44404657 aatctacttactatattataaaattaaatgcctatg 44404692  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 35039093 - 35039127
Alignment:
Q  195 atctacttactatattctaaaattaaatgcctatg 229  Q
    |||||||||||||||| ||||||||||||||||||    
T  35039093 atctacttactatattataaaattaaatgcctatg 35039127  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 18310007 - 18310040
Alignment:
Q  195 atctacttactatattctaaaattaaatgcctat 228  Q
    |||||||||||||||| |||||||||||||||||    
T  18310007 atctacttactatattataaaattaaatgcctat 18310040  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 20337169 - 20337203
Alignment:
Q  195 atctacttactatattctaaaattaaatgcctatg 229  Q
    |||||||||||||||| ||||||||||||||||||    
T  20337169 atctacttactatattataaaattaaatgcctatg 20337203  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 20745701 - 20745735
Alignment:
Q  195 atctacttactatattctaaaattaaatgcctatg 229  Q
    |||||||||||||||| ||||||||||||||||||    
T  20745701 atctacttactatattataaaattaaatgcctatg 20745735  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 21351352 - 21351386
Alignment:
Q  195 atctacttactatattctaaaattaaatgcctatg 229  Q
    |||||||||||||||| ||||||||||||||||||    
T  21351352 atctacttactatattataaaattaaatgcctatg 21351386  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 36518457 - 36518420
Alignment:
Q  192 ataatctacttactatattctaaaattaaatgcctatg 229  Q
    |||||||||||||||||||  |||||||||||||||||    
T  36518457 ataatctacttactatattacaaaattaaatgcctatg 36518420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 5250322 - 5250355
Alignment:
Q  196 tctacttactatattctaaaattaaatgcctatg 229  Q
    ||||||||||||||| ||||||||||||||||||    
T  5250322 tctacttactatattataaaattaaatgcctatg 5250355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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