View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_7 (Length: 545)
Name: NF1484_high_7
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_7 |
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| [»] scaffold1787 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 42927768 - 42927399
Alignment:
| Q |
19 |
taggactatagattaatacttcttaattagtgttaccatacatgaatttttcaaacaaagtaatgctaactaactagttgatgttacttagaaaactctc |
118 |
Q |
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| T |
42927768 |
taggactatagattaatacttcttaattagtgttaccatacatgaatttttcaaacaaagtaatgctaactaattagttgatgttacttagaaaactctt |
42927669 |
T |
|
| Q |
119 |
aacaatcttggcttgtaaatgtaggatgacagaacctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtggaaaggtacc |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42927668 |
aacaatcttggtttgtaaatgtaggatgacagaacctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtggaaaggtacc |
42927569 |
T |
|
| Q |
219 |
caagaaggggttgggaggatggttttccttcctatttaaaatttcccatttctgatgcacactttggacattaaggttcgtccttttattgctgcaattg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42927568 |
caagaaggggttgggaggatggttttccttcctatttaaaatttaccatttctgatgcacactttggacattaaggttcgtccttttattgctgcaattg |
42927469 |
T |
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| Q |
319 |
cgaataaagcgtgtagatccaccactgcagtagaactccttggaaaatttctggtgaaattaaagttttc |
388 |
Q |
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| T |
42927468 |
cgaataaagcgtgtagatccaccactgcagtagaactccttggaaaatttctggtgaaattaaagttttc |
42927399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 383 - 537
Target Start/End: Complemental strand, 42927359 - 42927205
Alignment:
| Q |
383 |
gttttctgttccagtttcattcactcgattgcagcgaacccagatagaacgcgcttctgcgtgggctgatcttgatgatgtcgaactgatgcctcaacca |
482 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42927359 |
gtttactgttccagtttcattcactcgattgcggcgaacccagatagaacgcgcttctgcgtgggctgatcttgatgatgttgaactgatgcctcaacca |
42927260 |
T |
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| Q |
483 |
atagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcatctc |
537 |
Q |
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| T |
42927259 |
atagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcttctc |
42927205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 258 - 382
Target Start/End: Complemental strand, 44728523 - 44728399
Alignment:
| Q |
258 |
aatttcccatttctgatgcacactttggacattaaggttcgtccttttattgctgcaattgcgaataaagcgtgtagatccaccactgcagtagaactcc |
357 |
Q |
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| T |
44728523 |
aatttcccatttctgatgcacactttggacattaagattcgtccttttgtagctgcatttgtgaacaaagtgtgcaaatcaaccactgcagtagaactcc |
44728424 |
T |
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| Q |
358 |
ttggaaaatttctggtgaaattaaa |
382 |
Q |
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||||||| ||||||||||| ||||| |
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| T |
44728423 |
ttggaaactttctggtgaatttaaa |
44728399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 44728269 - 44728197
Alignment:
| Q |
467 |
actgatgcctcaaccaatagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcatctcac |
539 |
Q |
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| T |
44728269 |
actgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttcttctcac |
44728197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 44728763 - 44728705
Alignment:
| Q |
153 |
cctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtggaa |
211 |
Q |
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| T |
44728763 |
cctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaa |
44728705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 515
Target Start/End: Original strand, 47842649 - 47842696
Alignment:
| Q |
468 |
ctgatgcctcaaccaatagcagtggctttgttttatgcacaacaacaa |
515 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||| |||||| |
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| T |
47842649 |
ctgatgcctcaaccaacagcagtggctttgttgtatgcacagcaacaa |
47842696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 47842115 - 47842147
Alignment:
| Q |
153 |
cctgaaatagcaattggaattgacattggcaca |
185 |
Q |
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| T |
47842115 |
cctgaaatagcaattggaattgatattggcaca |
47842147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 21111418 - 21111362
Alignment:
| Q |
154 |
ctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtgga |
210 |
Q |
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| T |
21111418 |
ctgaaatagcaattggaattgacattggcacatcaacatgttgtgtttccgtgtgga |
21111362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 469 - 532
Target Start/End: Complemental strand, 21354388 - 21354325
Alignment:
| Q |
469 |
tgatgcctcaaccaatagcagtggctttgttttatgcacaacaacaactgcagacttctgcttc |
532 |
Q |
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|||| ||||||| || |||||||||| |||| |||||||||||||||||||| |||||||||| |
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| T |
21354388 |
tgattcctcaactaacagcagtggctctgttgtatgcacaacaacaactgcatgcttctgcttc |
21354325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 21305751 - 21305704
Alignment:
| Q |
261 |
ttcccatttctgatgcacactttggacattaaggttcgtccttttatt |
308 |
Q |
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| T |
21305751 |
ttcccatttctgatgcacaccttagacattaaggttcacccttttatt |
21305704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1787 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1787
Description:
Target: scaffold1787; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 1279 - 1328
Alignment:
| Q |
261 |
ttcccatttctgatgcacactttggacattaaggttcgtccttttattgc |
310 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
1279 |
ttcccatttctgatgcacagcttggacattaaggttcacccttttattgc |
1328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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