View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_high_70 (Length: 237)

Name: NF1484_high_70
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_high_70
NF1484_high_70
[»] chr3 (34 HSPs)
chr3 (32-224)||(36265330-36265522)
chr3 (6-177)||(7046309-7046480)
chr3 (1-178)||(24134166-24134343)
chr3 (1-177)||(54447976-54448152)
chr3 (1-177)||(51302760-51302936)
chr3 (1-177)||(42294519-42294695)
chr3 (1-175)||(9337803-9337977)
chr3 (32-177)||(4356563-4356707)
chr3 (1-178)||(52274664-52274841)
chr3 (6-177)||(25593215-25593381)
chr3 (1-119)||(50638897-50639015)
chr3 (33-177)||(41129261-41129405)
chr3 (1-114)||(26019964-26020077)
chr3 (32-179)||(14752564-14752710)
chr3 (8-119)||(41636703-41636814)
chr3 (33-179)||(24119831-24119977)
chr3 (34-177)||(46181471-46181608)
chr3 (47-178)||(46135907-46136032)
chr3 (6-142)||(22523818-22523954)
chr3 (32-87)||(31405548-31405603)
chr3 (34-177)||(33249797-33249939)
chr3 (34-177)||(34704901-34705043)
chr3 (33-122)||(39889740-39889829)
chr3 (34-177)||(1782283-1782425)
chr3 (34-177)||(25537314-25537456)
chr3 (33-112)||(26994372-26994451)
chr3 (34-177)||(46068370-46068512)
chr3 (98-177)||(47844949-47845028)
chr3 (98-180)||(39391495-39391577)
chr3 (98-179)||(19421385-19421466)
chr3 (98-177)||(29077287-29077366)
chr3 (34-177)||(52174404-52174546)
chr3 (32-113)||(43009838-43009920)
chr3 (132-177)||(50639013-50639058)
[»] chr8 (27 HSPs)
chr8 (1-177)||(14921777-14921953)
chr8 (1-177)||(24580853-24581028)
chr8 (1-137)||(8000417-8000553)
chr8 (1-119)||(23444796-23444914)
chr8 (1-119)||(32982812-32982930)
chr8 (32-177)||(38600366-38600510)
chr8 (1-119)||(16364572-16364690)
chr8 (1-178)||(41477989-41478156)
chr8 (35-118)||(40861092-40861175)
chr8 (32-113)||(44710520-44710601)
chr8 (1-172)||(7382720-7382886)
chr8 (1-111)||(44755927-44756037)
chr8 (33-177)||(40680796-40680930)
chr8 (34-178)||(26241659-26241802)
chr8 (6-177)||(13451094-13451255)
chr8 (34-178)||(16383521-16383664)
chr8 (34-177)||(32414983-32415125)
chr8 (34-177)||(36685054-36685196)
chr8 (34-178)||(12615497-12615640)
chr8 (34-178)||(33303377-33303520)
chr8 (98-177)||(36054243-36054322)
chr8 (34-179)||(23950651-23950795)
chr8 (33-113)||(35056610-35056690)
chr8 (117-177)||(36919085-36919145)
chr8 (124-177)||(11989493-11989546)
chr8 (124-177)||(31520509-31520562)
chr8 (44-104)||(12638431-12638491)
[»] chr2 (23 HSPs)
chr2 (1-177)||(6419489-6419665)
chr2 (1-177)||(38445875-38446051)
chr2 (1-177)||(29768699-29768875)
chr2 (1-177)||(2994575-2994751)
chr2 (1-177)||(6431928-6432104)
chr2 (1-177)||(26259825-26259996)
chr2 (32-177)||(6283803-6283948)
chr2 (38-178)||(17740104-17740244)
chr2 (1-130)||(29044509-29044638)
chr2 (1-114)||(44092407-44092520)
chr2 (2-112)||(2611687-2611797)
chr2 (1-123)||(42077312-42077434)
chr2 (1-119)||(45434949-45435067)
chr2 (32-177)||(7299265-7299400)
chr2 (6-113)||(25879345-25879452)
chr2 (6-113)||(2182324-2182432)
chr2 (98-177)||(13028728-13028807)
chr2 (48-111)||(35959787-35959850)
chr2 (34-177)||(40738192-40738334)
chr2 (44-110)||(42517327-42517393)
chr2 (34-177)||(5936389-5936531)
chr2 (124-177)||(39231349-39231402)
chr2 (34-178)||(45261096-45261238)
[»] chr7 (38 HSPs)
chr7 (6-178)||(41631121-41631293)
chr7 (7-179)||(21806905-21807077)
chr7 (1-177)||(10228269-10228450)
chr7 (38-178)||(12418921-12419061)
chr7 (1-179)||(5667489-5667662)
chr7 (33-178)||(46191222-46191367)
chr7 (6-141)||(43595745-43595880)
chr7 (32-177)||(23670694-23670833)
chr7 (8-177)||(45469900-45470069)
chr7 (1-177)||(27595178-27595349)
chr7 (1-177)||(48829553-48829729)
chr7 (1-119)||(15757244-15757362)
chr7 (1-119)||(13391463-13391581)
chr7 (1-142)||(44848400-44848541)
chr7 (6-113)||(2196461-2196568)
chr7 (1-87)||(41902451-41902537)
chr7 (1-110)||(32585226-32585335)
chr7 (1-112)||(21441565-21441676)
chr7 (98-177)||(8485506-8485585)
chr7 (32-111)||(31377806-31377884)
chr7 (34-177)||(48214448-48214590)
chr7 (34-184)||(11410903-11411052)
chr7 (47-177)||(44409637-44409762)
chr7 (34-177)||(1411119-1411261)
chr7 (34-177)||(14775805-14775947)
chr7 (34-177)||(15226258-15226400)
chr7 (34-177)||(15942709-15942851)
chr7 (34-177)||(34520856-34520998)
chr7 (127-177)||(35709508-35709558)
chr7 (32-177)||(43341625-43341760)
chr7 (34-177)||(2732672-2732819)
chr7 (34-177)||(3357322-3357464)
chr7 (34-177)||(41399330-41399472)
chr7 (34-177)||(41892508-41892650)
chr7 (124-177)||(4068318-4068371)
chr7 (98-178)||(18532972-18533052)
chr7 (117-177)||(34002338-34002398)
chr7 (32-104)||(34002401-34002473)
[»] chr5 (22 HSPs)
chr5 (1-177)||(36113525-36113701)
chr5 (1-177)||(27054034-27054210)
chr5 (1-177)||(18295589-18295765)
chr5 (7-178)||(18158796-18158967)
chr5 (1-177)||(15677713-15677889)
chr5 (6-177)||(11877867-11878038)
chr5 (7-142)||(15397975-15398110)
chr5 (32-177)||(14949062-14949207)
chr5 (32-177)||(10018204-10018348)
chr5 (1-177)||(17869593-17869759)
chr5 (6-175)||(38255109-38255288)
chr5 (8-175)||(31624559-31624721)
chr5 (32-113)||(13916372-13916453)
chr5 (34-177)||(9163798-9163940)
chr5 (121-177)||(28209873-28209929)
chr5 (34-177)||(491611-491753)
chr5 (1-119)||(40084396-40084508)
chr5 (98-177)||(10932039-10932118)
chr5 (106-177)||(24427131-24427202)
chr5 (33-87)||(3880748-3880802)
chr5 (124-178)||(4101628-4101682)
chr5 (124-177)||(6643766-6643819)
[»] chr1 (42 HSPs)
chr1 (6-177)||(12298552-12298723)
chr1 (1-177)||(15850221-15850397)
chr1 (32-177)||(18343002-18343147)
chr1 (33-177)||(39920045-39920189)
chr1 (1-177)||(27090359-27090535)
chr1 (1-176)||(47367047-47367222)
chr1 (1-178)||(17385845-17386022)
chr1 (33-177)||(37535846-37535989)
chr1 (33-177)||(42649572-42649716)
chr1 (1-114)||(5499560-5499673)
chr1 (32-177)||(23556187-23556322)
chr1 (32-122)||(44913039-44913129)
chr1 (1-119)||(38671727-38671845)
chr1 (33-177)||(6305456-6305600)
chr1 (1-113)||(16452787-16452899)
chr1 (1-113)||(16461939-16462051)
chr1 (33-111)||(5616937-5617015)
chr1 (32-114)||(15321499-15321581)
chr1 (1-179)||(19507468-19507636)
chr1 (7-128)||(5506458-5506579)
chr1 (1-123)||(26257800-26257922)
chr1 (1-114)||(13077705-13077818)
chr1 (73-177)||(44779126-44779230)
chr1 (34-185)||(13253628-13253778)
chr1 (1-114)||(42384600-42384707)
chr1 (34-177)||(39860062-39860204)
chr1 (1-112)||(29522668-29522778)
chr1 (32-110)||(34049608-34049686)
chr1 (34-179)||(52223110-52223254)
chr1 (34-178)||(46847143-46847286)
chr1 (34-177)||(17806193-17806335)
chr1 (98-177)||(33785649-33785728)
chr1 (98-177)||(45372392-45372471)
chr1 (34-177)||(50096639-50096781)
chr1 (32-177)||(10312434-10312569)
chr1 (34-177)||(8417612-8417754)
chr1 (124-179)||(18353517-18353572)
chr1 (124-179)||(19708586-19708641)
chr1 (34-147)||(2989036-2989148)
chr1 (6-80)||(18700805-18700879)
chr1 (124-177)||(32238912-32238965)
chr1 (33-81)||(31955270-31955318)
[»] chr4 (28 HSPs)
chr4 (1-179)||(50636711-50636889)
chr4 (1-177)||(17980832-17981008)
chr4 (33-179)||(3095046-3095192)
chr4 (1-178)||(36489135-36489306)
chr4 (32-178)||(12582541-12582687)
chr4 (33-177)||(48659764-48659908)
chr4 (1-177)||(49389843-49390020)
chr4 (1-129)||(31843254-31843382)
chr4 (1-116)||(45783508-45783623)
chr4 (1-114)||(42431356-42431469)
chr4 (1-117)||(29590065-29590181)
chr4 (6-113)||(33240054-33240161)
chr4 (44-177)||(20392460-20392593)
chr4 (34-177)||(10010468-10010610)
chr4 (34-178)||(41487829-41487972)
chr4 (1-100)||(22270027-22270126)
chr4 (34-177)||(38307673-38307815)
chr4 (32-117)||(4422508-4422593)
chr4 (1-103)||(35041454-35041556)
chr4 (34-178)||(11844979-11845122)
chr4 (34-178)||(40730037-40730180)
chr4 (34-177)||(37010607-37010749)
chr4 (34-177)||(47691960-47692102)
chr4 (36-177)||(32212571-32212711)
chr4 (32-104)||(517979-518051)
chr4 (98-177)||(39787290-39787369)
chr4 (124-177)||(518046-518099)
chr4 (34-178)||(48826381-48826524)
[»] chr6 (21 HSPs)
chr6 (1-178)||(32186873-32187050)
chr6 (1-177)||(1101599-1101775)
chr6 (6-178)||(4229370-4229542)
chr6 (1-177)||(14500411-14500587)
chr6 (1-178)||(4173761-4173938)
chr6 (1-119)||(1559013-1559131)
chr6 (6-114)||(13041300-13041408)
chr6 (32-177)||(17156662-17156806)
chr6 (32-177)||(34858572-34858712)
chr6 (34-179)||(3257506-3257650)
chr6 (54-129)||(32158417-32158492)
chr6 (34-177)||(3026885-3027027)
chr6 (34-177)||(13276945-13277087)
chr6 (33-178)||(17607661-17607796)
chr6 (33-114)||(478775-478856)
chr6 (34-174)||(8437189-8437328)
chr6 (34-178)||(28890504-28890647)
chr6 (106-177)||(12296521-12296592)
chr6 (34-177)||(14610244-14610386)
chr6 (98-178)||(3728648-3728728)
chr6 (107-179)||(24012353-24012425)
[»] scaffold0275 (1 HSPs)
scaffold0275 (32-178)||(9536-9681)
[»] scaffold0886 (1 HSPs)
scaffold0886 (33-178)||(1340-1490)
[»] scaffold0129 (1 HSPs)
scaffold0129 (34-177)||(41281-41423)
[»] scaffold0037 (1 HSPs)
scaffold0037 (98-173)||(69951-70026)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 36265522 - 36265330
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| |||||||| | |  |||||||||||    
T  36265522 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaagcctagttctatctactaaacagttcaggccaggctaagccaaaacaggt 36265423  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaaccctaccaccaaccttaattgtcatcactgaagactccaagacataattact 224  Q
    ||||||||||  |||| ||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36265422 caggccgtagacccctgtaggtcgacctggcctattcctaaccctaccaccaaccttaattgtcatcactgaagactccaagacataattact 36265330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 7046480 - 7046309
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||   ||||||||||||||||    
T  7046480 cctattaggcttaacagtcttttttggaagcctaagcttggcctatttaactaaacagactttctaaaaagcctaagcctagacctatctactaaacagt 7046381  T
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||| |||| |||||||||||||||| ||||| |||| |||  ||||||| ||||||||||||||||    
T  7046380 ccaggccaggccaggccaaaacaggtcaggctgtaggcccctgtaggccggcctggcctattcccaacccta 7046309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 24134166 - 24134343
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       ||||| |||| ||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  24134166 gccggcctattaggcttaacagtctttttttgaagcttaagtttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 24134265  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||||||||||||| ||||||||||||||| ||||||||||| |||| |||  ||||||| |||||||||| ||||||    
T  24134266 acagtccaggccaggccagaccaaaacaggccaggccgtaggcccctgtaggccggcctggcctattcccatccctac 24134343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 54447976 - 54448152
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||  ||||| ||||||||||| || | | |||||||||||    
T  54447976 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacatgctttctaaaaagcctaagcccaggcctatctactaa 54448075  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||||||||||| |||||||||| ||||||||||| |||| |||  ||||||| ||||||| ||||||||    
T  54448076 acagtccaggccagaccaggccaaaacaggccaggccgtaggcccctgtaggccggcctggcctattcgcaacccta 54448152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 51302760 - 51302936
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||| ||| ||||||||||||||||||||||| |||| |||||| |||| |  ||||||||||    
T  51302760 gccggcctattaggcttaacagtctttttttgaagcctaagtttggcctatttaactaaacagactttctaaaaggcctaagcctaggcttatctactaa 51302859  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||||||||| |||| |||||| |||| |||  ||||||| ||||||||||||||||    
T  51302860 acagtccaggccaggccaggccaaaacaggccaggtcgtaggcccctgtaggccggcctggcctattcccaacccta 51302936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 42294519 - 42294695
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||| ||||       |||||||||| ||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  42294519 gccggcctattaggcttaatagtctttttctgaagcctaagtttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 42294618  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    || ||||||||||| ||||||||||||| | ||||||||||| |||| |||  ||||||| |||||||||| |||||    
T  42294619 accgtccaggccaggccagaccaaaacatgccaggccgtaggcccctgtaggccggcctggcctattcccatcccta 42294695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 9337977 - 9337803
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  9337977 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 9337878  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccc 175  Q
    |||||||||||||  |||| |||||||||  ||||||||||| | || |||  ||||||  ||||||||||||||    
T  9337877 acagtccaggccatgccaggccaaaacagaccaggccgtaggcctctgtaggccggcctagcctattcccaaccc 9337803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 4356707 - 4356563
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||| || ||||||||||||||||||||||  |||||||||||||||| | ||||||||||||||| |||||| || |||| ||||||||||     
T  4356707 gaagcctaagcctggcctatttaactaaacagactttttaaaaagcctaaaccta-gcctatctactaaacaggccaggctaggccaggccaaaacaggc 4356609  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| |||  | ||||| ||||||||||||||||    
T  4356608 caggccgtaggcccctgtaggccagcctggcctattcccaacccta 4356563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 52274664 - 52274841
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||| ||||||||||       |||||||||||||  ||| ||||||||||||| ||||| ||||||||||| |||||| |||||||| ||    
T  52274664 gccggcctattagacttaacagtctttttttgaagcctaagcttagcctgtttaactaaacaggctttctaaaaagcctaagcctatgcctatctacaaa 52274763  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||||||||||||| |||| ||||||||||||||  | |||| |||| |||  |||| || |||||||||||||||||    
T  52274764 acagtccaggccaggccaggccaaaacaggtcagatcataggcccctgtaggccggcttggcctattcccaaccctac 52274841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 25593381 - 25593215
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||    
T  25593381 cctattaggcttaacagtctttttttgaaacctaagcttgacctatttaactaaacagactttctaaaaagcctaagcctaggcctatctactaaacagt 25593282  T
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
     ||||      |||||||||||||| ||| ||||||| |||  |||  || |||| ||||||||||||||||    
T  25593281 tcagg-----tcagaccaaaacaggccagaccgtaggccccagtaggccgacctggcctattcccaacccta 25593215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 50638897 - 50639015
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||| |||||| |||| |||| | |||||||||||    
T  50638897 gccggcctattaggcttaacagtctttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagtctaagcctaagcctatctactaa 50638996  T
Q  101 acagtccaggccagaccag 119  Q
    |||||||||||||| ||||    
T  50638997 acagtccaggccaggccag 50639015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 41129405 - 41129261
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    |||||||||| |||||||||||||||||||  ||||  ||||||||||| |||| | |||||||||||||||  ||||||||||||| ||||||||||      
T  41129405 aagcctaagcctgacctatttaactaaacaagctttttaaaaagcctaagcctaagcctatctactaaacaggtcaggccagaccaggccaaaacaggct 41129306  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||| |||| ||   | ||||| ||||||||||||||||    
T  41129305 aggccgtaggcccctgtatgccagcctggcctattcccaacccta 41129261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26020077 - 26019964
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| | || | |||||||||||    
T  26020077 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcttaggcctatctactaa 26019978  T
Q  101 acagtccaggccag 114  Q
    ||||||||||||||    
T  26019977 acagtccaggccag 26019964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 14752564 - 14752710
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||| |||||||||||||||||||| ||||  ||||||||||| |||| | ||||||||||||||   |||||||| |||| |||||||| |     
T  14752564 gaagcctaagcctgacctatttaactaaacaggctttt-aaaaagcctaagcctaagcctatctactaaacaagtcaggccaggccaggccaaaacaagc 14752662  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||||||||||| |||| |||  | || || ||||||||||||||||||    
T  14752663 caggccgtaggcccctgtaggccagcttggcctattcccaaccctacc 14752710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 41636703 - 41636814
Alignment:
Q  8 tattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtcc 107  Q
    |||||||||||||||||       |||||||||||||| ||||||||||||||||| | ||| |||||| |||| |||| | ||||||||||||||||||    
T  41636703 tattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggccttctaaaaagtctaagcctaggcctatctactaaacagtcc 41636802  T
Q  108 aggccagaccag 119  Q
    ||||||| ||||    
T  41636803 aggccaggccag 41636814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 24119977 - 24119831
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    |||||||||  || |||||||||| |||||  ||||| ||||||||||| |||  ||||||| || |||||| ||||| ||||| || ||||| |||| |    
T  24119977 aagcctaagtctggcctatttaaccaaacatgctttctaaaaagcctaagccttggtctatcaacaaaacaggccaggtcagactaggccaaagcaggcc 24119878  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||| |||||| |||| |||  || |||| ||||||||||||||||||    
T  24119877 aggtcgtaggcccctgtaggccgacctggcctattcccaaccctacc 24119831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 46181608 - 46181471
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    |||||||||||||||||||||  |||| |||||||  ||||||||||||| || | || | || |||||||     ||||||||||||  ||||||| ||    
T  46181608 agcctaagcttgacctatttacttaaatagactttttaaaaagcctaaacata-gcctttttaataaacag-----gccagaccagacttaaacaggcca 46181515  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| ||| |||||||| ||||||||||||||||    
T  46181514 ggccataggcccctgtaggtcggcctggcctattcccaacccta 46181471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 46136032 - 46135907
Alignment:
Q  47 cctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccc 146  Q
    ||||||||||||| ||||||||  ||||||||||| |||||      |||||||||||   ||||||||||| ||||||||||| ||| |||||||||||    
T  46136032 cctatttaactaatcagactttttaaaaagcctaagcctat------ctactaaacaggttaggccagaccataccaaaacaggccagtccgtaggtccc 46135939  T
Q  147 tatagatcggcctgacctattcccaaccctac 178  Q
    | |||  | ||||  |||||| ||||||||||    
T  46135938 tgtaggccagcctagcctatttccaaccctac 46135907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 22523818 - 22523954
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    ||||||||||||||||| |       ||||||||||| |  ||||||||||||||||  ||||| ||||||||||| | || | |||||||||||||||     
T  22523818 cctattaggcttaacaggcttttctagaagcctaagcctcgcctatttaactaaacatgctttctaaaaagcctaagcttaggcctatctactaaacaga 22523917  T
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtagg 142  Q
     |||| ||| |||  |||||||||| |||| ||||||    
T  22523918 tcaggtcaggccaagccaaaacaggccaggtcgtagg 22523954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 31405603 - 31405548
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctat 87  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||| |||||    
T  31405603 gaagcctaagcctgacctatttaactaaacagactttttaaaaagcctaagcctat 31405548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 33249797 - 33249939
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| ||||||  ||||||| ||    
T  33249797 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccagacttaaacaggcca 33249895  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  33249896 ggccataggcccctgtaggccggcctggcctattcccaacccta 33249939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 34705043 - 34704901
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  34705043 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 34704945  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| ||||||||  ||||||| ||||||||||||||||    
T  34704944 ggccataggcccctataggccggcctggcctattcccaacccta 34704901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 39889740 - 39889829
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagacc 122  Q
    |||||||||  || |||||||||| |||||| ||||| ||||||||||| |||  | ||||| ||||||||| ||||||||| |||||||    
T  39889740 aagcctaagactggcctatttaaccaaacaggctttctaaaaagcctaagccttggcctatcaactaaacaggccaggccaggccagacc 39889829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 1782425 - 1782283
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  1782425 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 1782327  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  1782326 ggccataggcccctgtaggccggcctggcctattcccaacccta 1782283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 25537314 - 25537456
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||  |||||||||||  |||| || ||||  ||||||||||| |||| | || | || |||||||  |||| ||| ||||||  ||||||| ||    
T  25537314 agcctaagtctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggtcaggtcagtccagacttaaacaggcca 25537412  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| ||||||||  ||||||| ||||||||||||||||    
T  25537413 ggccataggcccctataggccggcctggcctattcccaacccta 25537456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 26994451 - 26994372
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggcc 112  Q
    |||||||||  ||| ||||||||| |||||||||||| ||||||||||| |||  | ||||| ||||||||| |||||||    
T  26994451 aagcctaagactgaactatttaaccaaacagactttctaaaaagcctaagccttggcctatcaactaaacaggccaggcc 26994372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 46068370 - 46068512
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||   |||||||| |||| |  ||||||||||    
T  46068370 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaagtcaggccaggccaggcttaaacaggtca 46068468  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  46068469 ggccataggcccctgtaggccggcctggcctattcccaacccta 46068512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 47844949 - 47845028
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| |||||||||| ||| |  |||||||||||||| |||| |||| |||  ||||||| ||||||||||||||||    
T  47844949 taaacaggccaggccagatcaggcttaaacaggtcaggccataggcccctgtaggccggcctggcctattcccaacccta 47845028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 39391495 - 39391577
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctacca 180  Q
    ||||||| ||||||||| |||| |  ||||||| |||||| |||| |||| |||  ||||||| |||||||||||||||||||    
T  39391495 taaacaggccaggccaggccaggcttaaacaggccaggccataggcccctgtaggccggcctggcctattcccaaccctacca 39391577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 19421385 - 19421466
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||||||| ||||||||| |||| |  ||||||| |||||| |||| |||| |||  ||||||| ||||||||||||||||||    
T  19421385 taaacagaccaggccaggccaggcttaaacaggccaggccataggcccctgtaggccggcctggcctattcccaaccctacc 19421466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 29077287 - 29077366
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| ||||||||| |||| |  ||||||| |||||| |||| |||| |||  ||||||| ||||||||||||||||    
T  29077287 taaacaggccaggccaggccaggcttaaacaggccaggccataggcccctgtaggccggcctggcctattcccaacccta 29077366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 52174546 - 52174404
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  52174546 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 52174448  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  || |||| ||||||||||||||||    
T  52174447 ggccataggcccctgtaggccgacctggcctattcccaacccta 52174404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 43009920 - 43009838
Alignment:
Q  32 gaagcctaagcttgaccta-tttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggcca 113  Q
    ||||||||||| ||||||| |||||||||| || ||||  ||||||||||| |||| | |||| |||||||||| | ||||||    
T  43009920 gaagcctaagcctgacctaatttaactaaataggctttttaaaaagcctaagcctaagcctatttactaaacagacgaggcca 43009838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 50639013 - 50639058
Alignment:
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  50639013 caggccgtaggcccctgtaggtcggcctggcctattcccaacccta 50639058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 14921777 - 14921953
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  14921777 gccggcctattaggcttaacagtctttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 14921876  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||||||||| ||||||||||| |||| |||  ||||||||||||||||||||||||    
T  14921877 acagtccaggccaggccaggccaaaacaggccaggccgtaggcccctgtaggccggcctgacctattcccaacccta 14921953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 24580853 - 24581028
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  24580853 gccgacctattaggcttaacagtctttttt-gaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 24580951  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||| |||| ||| ||||||||||  ||||||||||| |||| |||  ||||||| ||||||||||||||||    
T  24580952 acagtccagaccaggccaaaccaaaacagtccaggccgtaggcccctgtaggccggcctggcctattcccaacccta 24581028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 8000417 - 8000553
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  8000417 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 8000516  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggcc 137  Q
    ||||||||||||||  |||||||||||||||||||||    
T  8000517 acagtccaggccaggtcagaccaaaacaggtcaggcc 8000553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 23444796 - 23444914
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||    
T  23444796 gccgacctattaggcttaacagtctttttttgaagcctaagcttgtcctatttaactaaacagactttctaaaaagcctaagcctatgcctatctactaa 23444895  T
Q  101 acagtccaggccagaccag 119  Q
    |||||||||||||| ||||    
T  23444896 acagtccaggccaggccag 23444914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 32982930 - 32982812
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| | |||||||||||    
T  32982930 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggcttttcaaaaagcctaaacctaggcctatctactaa 32982831  T
Q  101 acagtccaggccagaccag 119  Q
    |||||||||||||| ||||    
T  32982830 acagtccaggccaggccag 32982812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 38600510 - 38600366
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||| |||||||||||||||||||| ||||  ||||||||||| |||| | ||||||||||||||| |||||| || |||| ||||||||||     
T  38600510 gaagcctaagcctgacctatttaactaaacaggctttttaaaaagcctaagccta-gcctatctactaaacaggccaggctaggccaggccaaaacaggc 38600412  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| |||  | ||||| ||||||||||||||||    
T  38600411 caggccgtaggcccctgtaggccagcctggcctattcccaacccta 38600366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 16364690 - 16364572
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  16364690 gccggcctattaggcttaacagtccttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 16364591  T
Q  101 acagtccaggccagaccag 119  Q
    |||||| ||| ||| ||||    
T  16364590 acagtctaggtcaggccag 16364572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 41478156 - 41477989
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||||||||||| |||||||||||       |||||||||||||| |||| |||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  41478156 gccgacctattatgcttaacagtctttttttgaagcctaagcttggcctacttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 41478057  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    | |||||| |          |||||||||||||||||||||| |||| |||  ||||||| |||||||||||||||||    
T  41478056 atagtccaag----------ccaaaacaggtcaggccgtaggcccctgtaggccggcctggcctattcccaaccctac 41477989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 40861092 - 40861175
Alignment:
Q  35 gcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagacca 118  Q
    |||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||  |||| |||||||    
T  40861092 gcctaagcctgacctatttaactaaacagactttctaaaaaacctaaacctatgcctatctactaaacaggtcaggtcagacca 40861175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 44710520 - 44710601
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggcca 113  Q
    |||| ||||||||||||||||||||||||||  ||||| ||||||||||| |||| | ||||||||||||||||||||||||    
T  44710520 gaagtctaagcttgacctatttaactaaacaagctttctaaaaagcctaagcctaggcctatctactaaacagtccaggcca 44710601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 7382886 - 7382720
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| ||||||||||||||||| |       ||||| |||||||| ||||||||||||| ||||||||| ||||||||||| ||||   ||| |||||||    
T  7382886 gccggcctattaggcttaacagcctttttttgaagcataagcttggcctatttaactaagcagactttctaaaaagcctaagcctaaacctacctactaa 7382787  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaa 172  Q
    |||||     ||||||||| ||||||||||  |||||||||| |||| |||  |||||| || |||||||||    
T  7382786 acagt-----ccagaccaggccaaaacaggctaggccgtaggcccctgtaggccggcctaacttattcccaa 7382720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 44755927 - 44756037
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       ||||||||| |||  ||||||||||||||||||||||| |||||||| || ||||   |||||||||||    
T  44755927 gccggcctattaggcttaacagtctttttttgaagcctaaactttgcctatttaactaaacagactttctaaaaagccgaagcctagacctatctactaa 44756026  T
Q  101 acagtccaggc 111  Q
    |||||||||||    
T  44756027 acagtccaggc 44756037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 40680796 - 40680930
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    |||||||||| ||||||||||||| ||| || ||||| ||||||||||| |||  | ||||| ||||||||| ||||||||          |||||||||    
T  40680796 aagcctaagcctgacctatttaaccaaataggctttctaaaaagcctaagccttggcctatcaactaaacaggccaggcca----------aaacaggtc 40680885  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||| |||| |||  ||||||| ||||||||||||||||    
T  40680886 aggccgtaggcccctgtaggccggcctggcctattcccaacccta 40680930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 26241659 - 26241802
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  ||||||| ||||  ||||||||||| |||| | || | || ||||||| ||| ||||| |||| |  ||||||| ||    
T  26241659 agcctaagcctgacctatttacttaaacaggctttttaaaaagcctaagccta-gcctttttaataaacaggccaagccaggccaggcttaaacaggcca 26241757  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||| ||||||||  ||||||| |||||||||||||||||    
T  26241758 ggccataggcccctataggccggcctggcctattcccaaccctac 26241802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 13451094 - 13451255
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    ||||||||||||||||| |       ||||||||||| |||||||||||| || |||  ||||| ||||||||||| |||| | |||||| |||||        
T  13451094 cctattaggcttaacaggcttttcttgaagcctaagcctgacctatttaattagacatgctttctaaaaagcctaagcctaggcctatctgctaaa---- 13451189  T
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
          |||||||| ||||||||||| ||| |||||| ||||||||  || |||||||||||||||||||||    
T  13451190 ------cagaccaggccaaaacaggttaggtcgtaggcccctataggccgacctgacctattcccaacccta 13451255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 16383664 - 16383521
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  16383664 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 16383566  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||| ||||||||  ||||||| |||||||||||||||||    
T  16383565 ggccataggcccctataggccggcctggcctattcccaaccctac 16383521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 32415125 - 32414983
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| |||| ||||||||| |  ||||||| ||    
T  32415125 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccagaccagaccaggcttaaacaggcca 32415027  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    | || |||| |||| |||  ||||||||||||||||||||||||    
T  32415026 gaccataggcccctgtaggccggcctgacctattcccaacccta 32414983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 36685054 - 36685196
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||||||    
T  36685054 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggtca 36685152  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  36685153 ggccataggcccctgtaggccggcctggcctattcccaacccta 36685196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 12615497 - 12615640
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  12615497 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 12615595  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||| |||| |||  ||||||| |||||||||||||||||    
T  12615596 ggccataggcccctgtaggccggcctggcctattcccaaccctac 12615640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 33303520 - 33303377
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  33303520 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 33303422  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||| |||| |||  ||||||| |||||||||||||||||    
T  33303421 ggccataggcccctgtaggccggcctggcctattcccaaccctac 33303377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 36054322 - 36054243
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| ||||||||| ||||||  ||||||| |||||| |||| |||| |||  ||||||| ||||||||||||||||    
T  36054322 taaacaggccaggccaggccagacttaaacaggccaggccataggcccctgtaggccggcctggcctattcccaacccta 36054243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 23950651 - 23950795
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || |||||||  |||||||| |||| |  ||||||| ||    
T  23950651 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggtcaggccaggccaggcttaaacaggcca 23950749  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||||    
T  23950750 ggccataggcccctgtaggccggcctggcctattcccaaccctacc 23950795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 35056610 - 35056690
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggcca 113  Q
    |||||||||  ||||||||||||| |||||  ||||| ||||||||||| |||  | ||||| ||||||||| ||||||||    
T  35056610 aagcctaagactgacctatttaaccaaacatgctttctaaaaagcctaagccttgggctatcaactaaacaggccaggcca 35056690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 36919085 - 36919145
Alignment:
Q  117 cagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||| ||||||||||||||||||| | | |||| ||  |||||||||||||||||||||    
T  36919085 cagacctaaacaggtcaggccgtaggcctcgataggtcaacctgacctattcccaacccta 36919145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 11989493 - 11989546
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||| |||  ||||||| ||||||||||||||||    
T  11989493 aaacaggtcaggccataggcccctgtaggccggcctgccctattcccaacccta 11989546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 31520509 - 31520562
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| ||||||||||  |||| ||| |||||||| ||||||||||||||||    
T  31520509 aaacaggccaggccgtagacccctgtaggtcggcctggcctattcccaacccta 31520562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 12638431 - 12638491
Alignment:
Q  44 tgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacag 104  Q
    |||||||||||||||||||||||||  | |||||||||  ||  | |||||||||||||||    
T  12638431 tgacctatttaactaaacagactttttataaagcctaagactgagcctatctactaaacag 12638491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 6419665 - 6419489
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    ||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  6419665 gccgacctattaggcttaacattctttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 6419566  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||||||||| ||||||||||| |||| |||  ||||||||||||||||||||||||    
T  6419565 acagtccaggccaggccaggccaaaacaggccaggccgtaggcccctgtaggccggcctgacctattcccaacccta 6419489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 38446051 - 38445875
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||  ||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||    
T  38446051 gccggcctattaggcttaacagtctttttttgaagcctaagcttagcctatttaactaaacaggctttctaaaaagcctaagcctaggtctatctactaa 38445952  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||||||||| ||||||||||| |||| |||  ||||||| ||||||||||||||||    
T  38445951 acagtccaggccaggccaggccaaaacaggccaggccgtaggcccctgtaggccggcctggcctattcccaacccta 38445875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 29768699 - 29768875
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||| |||||| || |||||||||||||| || ||||||||||||||||| |||| | |||||||||||    
T  29768699 gccggcctattaggcttaacagtctttttttgaagtctaagcctggcctatttaactaaataggctttccaaaaagcctaagcctaggcctatctactaa 29768798  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    | |||||||||||| |||| |||||||||| ||||||||||| ||||||||  ||||||| ||||||||||||||||    
T  29768799 atagtccaggccaggccaggccaaaacaggccaggccgtaggcccctataggccggcctggcctattcccaacccta 29768875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 2994751 - 2994575
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||| ||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||| ||||||    
T  2994751 gccggcctattaggcttaacaatctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatgtactaa 2994652  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||| |||| |||| |||||||||  ||||||||||| |||| |||  ||||||| ||||||||||||||||    
T  2994651 acagtccagaccaggccaggccaaaacagaccaggccgtaggcccctgtaggccggcctggcctattcccaacccta 2994575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 6431928 - 6432104
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||        ||||||||||||  ||||||||||||||||| ||||| ||||| | ||| |||| | |||||||||||    
T  6431928 gccggcctattaggcttaacagtctttttttaaagcctaagcttagcctatttaactaaacaggctttctaaaaaacataagcctaagcctatctactaa 6432027  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||||||||| ||||||||||| |||| |||  ||||||| |||||||||| |||||    
T  6432028 acagtccaggccaggccaggccaaaacaggccaggccgtaggcccctgtaggccggcctggcctattcccatcccta 6432104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 26259996 - 26259825
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       ||||||||||| |||||||||||||||||||| ||||| ||||||||||| | || | |||||||||||    
T  26259996 gccggcctattaggcttaacagtctttttttgaagcctaagcctgacctatttaactaaacaggctttctaaaaagcctaagcttaagcctatctactaa 26259897  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||| ||||     |||| |||||||||| ||||||||||| |||| |||  ||||||||||||||||||||||||    
T  26259896 acagttcagg-----ccaggccaaaacaggccaggccgtaggcccctgtaggccggcctgacctattcccaacccta 26259825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 6283803 - 6283948
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||| |||| | |||||||||||||||  |||||||| ||||  ||||| |||     
T  6283803 gaagcctaagcctgacctatttaactaaacagactttttaaaaagcctaagcctaagcctatctactaaacaggtcaggccaggccaggtcaaaataggc 6283902  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| ||| || ||||| ||||||||||||||||    
T  6283903 caggccgtaggcccctgtaggtcagcctggcctattcccaacccta 6283948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 178
Target Start/End: Complemental strand, 17740244 - 17740104
Alignment:
Q  38 taagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtcaggcc 137  Q
    ||||| ||||||||| |||||||||  ||||| ||||||||||| |||| |  ||| |||||| ||| |||||||||||||| |||||||||||||||||    
T  17740244 taagcctgacctattcaactaaacaagctttctaaaaagcctaagcctaggcttatgtactaatcaggccaggccagaccaggccaaaacaggtcaggcc 17740145  T
Q  138 gtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||||| |||| ||   |||||||||||||||||||||||||    
T  17740144 gtaggcccctgtatgccggcctgacctattcccaaccctac 17740104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 29044509 - 29044638
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||| ||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  29044509 gccggcctattaggcttaacactctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 29044608  T
Q  101 acagtccaggccagaccagaccaaaacagg 130  Q
    |||||||||||||| |||| ||||||||||    
T  29044609 acagtccaggccaggccaggccaaaacagg 29044638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 44092520 - 44092407
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| | |||||||||||    
T  44092520 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacagactttctaaaaagcctaagcctaggcctatctactaa 44092421  T
Q  101 acagtccaggccag 114  Q
    ||||||||||||||    
T  44092420 acagtccaggccag 44092407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 2611687 - 2611797
Alignment:
Q  2 ccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaa 101  Q
    ||||||||||| |||||||||||       ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||    
T  2611687 ccgacctattaagcttaacagtctttttttgaagcctaaacttgacctatttaactaaacagactttctaaaaagcctaagcctaggcctatctactaaa 2611786  T
Q  102 cagtccaggcc 112  Q
    |||||||||||    
T  2611787 cagtccaggcc 2611797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 42077312 - 42077434
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||| ||| ||||||||||||||||  ||||||||||||||||| |||| | |||||||||||    
T  42077312 gccggcctattaggcttaacagtctttttttgaagcctaagtttggcctatttaactaaacaagctttccaaaaagcctaagcctaggcctatctactaa 42077411  T
Q  101 acagtccaggccagaccagacca 123  Q
    |||||||||||||| ||||||||    
T  42077412 acagtccaggccaggccagacca 42077434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 45434949 - 45435067
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  45434949 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 45435048  T
Q  101 acagtccaggccagaccag 119  Q
    ||||||||| |||| ||||    
T  45435049 acagtccagtccaggccag 45435067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 7299265 - 7299400
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||| |||| ||||||||||||||          |||| ||| ||||||||||     
T  7299265 gaagcctaagcctgacctatttaactaaacagactttttaaaaagcctaagcctaagtctatctactaaa----------cagatcaggccaaaacaggc 7299354  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| |||  |  |||||||||||||||||||||    
T  7299355 caggccgtaggcccctgtaggccaacctgacctattcccaacccta 7299400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 25879452 - 25879345
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||  ||||| ||||||||||| ||||   |||||| |||||||||    
T  25879452 cctattaggcttaacagtcttttattgaagcctaagcttgacctatttaactaaacaagctttctaaaaagcctaagcctaaacctatctcctaaacagt 25879353  T
Q  106 ccaggcca 113  Q
    ||||||||    
T  25879352 ccaggcca 25879345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 2182432 - 2182324
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttc-caaaaagcctaaacctatgtctatctactaaacag 104  Q
    ||||||||||||||| |||       |||||||||||||| |||||||||||||||||||||||  ||||||||||| |||| | |||||||||||||||    
T  2182432 cctattaggcttaacggtctttttttgaagcctaagcttggcctatttaactaaacagactttctaaaaaagcctaagcctaggcctatctactaaacag 2182333  T
Q  105 tccaggcca 113  Q
    |||| ||||    
T  2182332 tccatgcca 2182324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 13028807 - 13028728
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| ||||||||| |||| |  ||||||| |||||| |||| ||||||||  ||||||| ||||||||||||||||    
T  13028807 taaacaggccaggccaggccaggcttaaacaggccaggccataggcccctataggccggcctggcctattcccaacccta 13028728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 35959787 - 35959850
Alignment:
Q  48 ctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggc 111  Q
    |||||||||||||||| ||||  ||||||||||| |||| | ||||||||||||||| ||||||    
T  35959787 ctatttaactaaacaggctttttaaaaagcctaagcctaagcctatctactaaacagaccaggc 35959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 40738192 - 40738334
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||  |||| |  ||| ||||||    
T  40738192 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaagccaggcttaaataggtca 40738290  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||  |||||||| |||||||| ||||||||||||||||    
T  40738291 ggccatagacccctataggtcggcctggcctattcccaacccta 40738334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 42517327 - 42517393
Alignment:
Q  44 tgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccagg 110  Q
    ||||||||||||||||||| |||||| ||||| ||||| | || |||||||||||||| || |||||    
T  42517327 tgacctatttaactaaacatactttctaaaaaacctaagcataggtctatctactaaataggccagg 42517393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 5936531 - 5936389
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| |||||||  ||||||||||| |||| | || | || ||||||| || | |||| |||| |  ||||| | ||    
T  5936531 agcctaagcctgacctatttacttaaatagactttttaaaaagcctaagccta-gcctttttaataaacaggcccgaccaggccaggcttaaacaagcca 5936433  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| ||||||||  || |||| ||||||||||||||||    
T  5936432 ggccataggcccctataggccgacctggcctattcccaacccta 5936389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 39231349 - 39231402
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||| |||||||| |||| |||||| ||||||||    
T  39231349 aaacaggtcaggccataggcccctgtagatcggtctgatctattctcaacccta 39231402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 45261238 - 45261096
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||| |||||||||||||  |||| ||| |||  ||||||||||| |||| || | | || ||||||| | ||||||| |||| |  ||||||  ||    
T  45261238 agcctaaacttgacctatttacttaaatagattttttaaaaagcctaagccta-gtatttttaataaacaggctaggccaggccaggcttaaacagacca 45261140  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||  |||| |||| |||||||||||||| ||||||||||    
T  45261139 ggccatagacccctgtaga-cggcctgacctatttccaaccctac 45261096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 41631293 - 41631121
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||    
T  41631293 cctattaggcttaacagtctttttttgaagcctaagcttgatctatttaactaaacagactttccaaaaagcttaagcctaggcctatctactaaacagt 41631194  T
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    | ||| |||| ||| |||||||||||||||||||||| |||| ||||||||||||  ||||||||||||||||    
T  41631193 caaggtcagatcaggccaaaacaggtcaggccgtaggcccctgtagatcggcctggtctattcccaaccctac 41631121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 21806905 - 21807077
Alignment:
Q  7 ctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtc 106  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||     
T  21806905 ctattaggcttaacagtctttttttgaagcctaagcttgacctatttaactaaacagactttctaaaaagcctaagcctaggcctatctactaaacagtt 21807004  T
Q  107 caggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    |||| ||| |||| |||||||||| ||||||||||| |||| |||  || |||||| ||||||||||||||||    
T  21807005 caggtcaggccaggccaaaacaggccaggccgtaggcccctgtaggccgacctgacttattcccaaccctacc 21807077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 10228269 - 10228450
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||| ||       |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| | |||||||||||    
T  10228269 gccggcctattaggcttaacaatctttttttgaagcctaagcttggcctatttaactaaacagactttctaaaaagcctaagcctaggcctatctactaa 10228368  T
Q  101 acagt-----ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||     |||||||||||||| |||||||||||||||||||||| |||| |||  ||||||| ||||||||||||||||    
T  10228369 acagtccatgccaggccagaccaggccaaaacaggtcaggccgtaggcccctgtaggccggcctggcctattcccaacccta 10228450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 178
Target Start/End: Complemental strand, 12419061 - 12418921
Alignment:
Q  38 taagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtcaggcc 137  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||||| |||| |||||||| | ||| ||    
T  12419061 taagcttggcctatttaactaaacagactttctaaaaagcctaagcctaggcctatctactaaacagtccaggccaggccaggccaaaacatgccagacc 12418962  T
Q  138 gtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||||| |||| |||  |||||||||||||||||||| ||||    
T  12418961 gtaggcccctgtaggccggcctgacctattcccaacactac 12418921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 5667489 - 5667662
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       ||||||||||| || ||||||||||||||||  ||||| ||||||||||| |||| | |||||||||||    
T  5667489 gccggcctattaggcttaacagtctttttttgaagcctaagcctggcctatttaactaaacatgctttctaaaaagcctaagcctaagcctatctactaa 5667588  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||||||||||     |||| |||||||||| ||||||||||| |||| |||  ||||||||||||||||||||||||||    
T  5667589 acagtccagg-----ccaggccaaaacaggccaggccgtaggcccctgtaggccggcctgacctattcccaaccctacc 5667662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 178
Target Start/End: Complemental strand, 46191367 - 46191222
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||   ||||| ||||||||||||||| ||| |||| ||||||||||||    
T  46191367 aagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctagacctatcaactaaacagtccaggtcaggccaggccaaaacaggtc 46191268  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |   ||||||||||| |||  ||||||| |||||||||||||||||    
T  46191267 aaatcgtaggtccctgtaggccggcctggcctattcccaaccctac 46191222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 43595880 - 43595745
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||    
T  43595880 cctattaggcttaacagtctttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctaagcctatctactaaacagt 43595781  T
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtag 141  Q
    ||||||||| |||   ||||||||| ||||||||||    
T  43595780 ccaggccaggccaagtcaaaacaggccaggccgtag 43595745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 23670833 - 23670694
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||     ||||||||| ||||||||||     
T  23670833 gaagcctaagcttgacctatttaactaaacagactttctaaaaagcctaagcctaggcctatctactaaacagt-----ccagaccaggccaaaacaggc 23670739  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| |||  | ||||| ||||||||||||||||    
T  23670738 caggccgtaggcccctgtag-gccgcctggcctattcccaacccta 23670694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 45470069 - 45469900
Alignment:
Q  8 tattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtcc 107  Q
    |||||||||||||||||       |||||||||| ||| ||||||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||    
T  45470069 tattaggcttaacagtctttttttgaagcctaagtttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaaacagtcc 45469970  T
Q  108 aggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||| ||| |||||| |||||| | ||||||||||| |||| |||  |||||||  ||||||||| |||||    
T  45469969 aggtcaggccagactaaaacatgccaggccgtaggcccctgtaggccggcctggtctattcccatcccta 45469900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 27595349 - 27595178
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||| |||||||  || |||| |||||||||||||    
T  27595349 gccggcctattaggcttaacagtctttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagctgaagcctaggtctatctactaa 27595250  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||      ||| |||||||||| ||||||||||| |||| |||  ||||||| |||||||||| |||||    
T  27595249 acagtccagg-----tcaggccaaaacaggccaggccgtaggcccctgtaggccggcctggcctattcccatcccta 27595178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 48829553 - 48829729
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| ||||||||||||||||||        |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  48829553 gccggcctattaggcttaacagtatttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 48829652  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||| || |||||  ||| |||||||||  |||| |||||| |||| |||  | ||||| ||||||||||||||||    
T  48829653 acagtgcaagccaggtcaggccaaaacagaccaggtcgtaggcccctgtaggccagcctggcctattcccaacccta 48829729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 15757362 - 15757244
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||| ||||||||||||||       |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| | |||||||||||    
T  15757362 gccggcctactaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttccaaaaagcctaagcctaggcctatctactaa 15757263  T
Q  101 acagtccaggccagaccag 119  Q
    |||||||||||||| ||||    
T  15757262 acagtccaggccaggccag 15757244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 13391463 - 13391581
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| |||||||||||||| || ||||| ||||||||||| |||| | |||||||||||    
T  13391463 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaataggctttctaaaaagcctaagcctaggcctatctactaa 13391562  T
Q  101 acagtccaggccagaccag 119  Q
    |||||||||||||| ||||    
T  13391563 acagtccaggccaggccag 13391581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 44848400 - 44848541
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       ||||| |||||||| ||||||||||||||||| ||||| |||||||||||  ||| | |||||||||||    
T  44848400 gccggcctattaggcttaacagtctttttttgaagcttaagcttggcctatttaactaaacaggctttctaaaaagcctaagtctaggcctatctactaa 44848499  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtagg 142  Q
    ||| |||| ||||| | || |||||||||| |||||||||||    
T  44848500 acaatccaagccaggctaggccaaaacaggccaggccgtagg 44848541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 2196461 - 2196568
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       |||||||||| ||| ||||||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||    
T  2196461 cctattaggcttaacagtctttttttgaagcctaagtttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaaacagt 2196560  T
Q  106 ccaggcca 113  Q
    ||||||||    
T  2196561 ccaggcca 2196568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 41902537 - 41902451
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctat 87  Q
    |||| |||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  41902537 gccggcctattaggcttaacagtctttttttgaagcctaagtttgacctatttaactaaacagactttctaaaaagcctaaacctat 41902451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32585226 - 32585335
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||| ||       |||||||||||||| ||||||||||||||||| ||| |||||||| |||| |||| | |||||||||||    
T  32585226 gccggcctattaggcttaacaatctttttttgaagcctaagcttggcctatttaactaaacaggcttcccaaaaagtctaagcctaggcctatctactaa 32585325  T
Q  101 acagtccagg 110  Q
    |||| |||||    
T  32585326 acagcccagg 32585335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 21441676 - 21441565
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||        |||||||||  || |||||||||||||| || ||||||||||||||||| |||| | |||||||||||    
T  21441676 gccggcctattaggcttaacagtctttttttaaagcctaagtctggcctatttaactaaataggctttccaaaaagcctaagcctaggcctatctactaa 21441577  T
Q  101 acagtccaggcc 112  Q
    |||| |||||||    
T  21441576 acaggccaggcc 21441565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 8485585 - 8485506
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||  |||||||||||||||  ||||||| |||||| |||| |||| |||  ||||||||||||||||||||||||    
T  8485585 taaacagatcaggccagaccagacttaaacaggccaggccataggcccctgtaggccggcctgacctattcccaacccta 8485506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 31377806 - 31377884
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggc 111  Q
    |||| |||||| |||||||||||||||||||| ||||  ||||||||||| |||| | ||||||||||||||| ||||||    
T  31377806 gaagtctaagcctgacctatttaactaaacaggctttttaaaaagcctaagccta-gcctatctactaaacaggccaggc 31377884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 48214448 - 48214590
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| ||||   || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  48214448 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagcctaac-ctttttaataaacagaccaggccaggccaggcttaaacaggcca 48214546  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| ||||||||  ||||||| ||||||||||||||||    
T  48214547 ggccataggcccctataggccggcctggcctattcccaacccta 48214590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 184
Target Start/End: Original strand, 11410903 - 11411052
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  11410903 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 11411001  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctaccaccaa 184  Q
    |||| |||| |||| |||  ||||||| |||||||||||||||||| ||||    
T  11411002 ggccataggcccctgtaggccggcctggcctattcccaaccctacctccaa 11411052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 44409762 - 44409637
Alignment:
Q  47 cctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccc 146  Q
    ||||||||||||||||  ||||| ||||||||||| |||| |  | |||||||||     |||| ||| |||| ||||||||||||||| |||||  ||     
T  44409762 cctatttaactaaacatgctttctaaaaagcctaagcctaggcttgtctactaaa-----caggacaggccaggccaaaacaggtcaggtcgtagaccct 44409668  T
Q  147 tatagatcggcctgacctattcccaacccta 177  Q
    | ||||||||| || ||||||||||||||||    
T  44409667 tgtagatcggcatggcctattcccaacccta 44409637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 1411261 - 1411119
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||| ||| |||| |  ||||||| ||    
T  1411261 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggtcaggccaggcttaaacaggcca 1411163  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  1411162 ggccataggcccctgtaggccggcctggcctattcccaacccta 1411119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 14775947 - 14775805
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  14775947 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 14775849  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  14775848 ggccataggcccctgtaggccggcctggcctattcccaacccta 14775805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 15226400 - 15226258
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  15226400 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 15226302  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  15226301 ggccataggcccctgtaggccggcctggcctattcccaacccta 15226258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 15942851 - 15942709
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||| ||| ||    
T  15942851 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaataggcca 15942753  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| ||||||||  ||||||| ||||||||||||||||    
T  15942752 ggccataggcccctataggccggcctggcctattcccaacccta 15942709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 34520998 - 34520856
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  34520998 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 34520900  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  34520899 ggccataggcccctgtaggccggcctggcctattcccaacccta 34520856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 35709558 - 35709508
Alignment:
Q  127 caggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||||||||||||| |||| ||  ||||||||||||||||||||    
T  35709558 caggtcaggccgtaggtccctgtagaccgatctgacctattcccaacccta 35709508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 43341625 - 43341760
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||| | |||||||||||||||||| ||||| |||||| |||| |||| |  | ||||||||| ||          |||||||||||||||||    
T  43341625 gaagcctaagcctaacctatttaactaaacaggctttctaaaaaggctaagcctaggcttgtctactaaatag----------accagaccaaaacaggt 43341714  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||||| |||| ||   ||||||  ||||||||||||||||    
T  43341715 caggtcgtaggcccctgtaagccggcctagcctattcccaacccta 43341760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 2732672 - 2732819
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagacca-----aaaca 128  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |||     |||||    
T  2732672 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggccaggcttaaaca 2732770  T
Q  129 ggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    || |||||| |||| |||| |||  ||||||| ||||||||||||||||    
T  2732771 ggccaggccataggcccctgtaggccggcctggcctattcccaacccta 2732819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 3357322 - 3357464
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||  |||| |  ||||||| ||    
T  3357322 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccatgccaggcttaaacaggcca 3357420  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  || |||| ||||||||||||||||    
T  3357421 ggccataggcccctgtaggccgacctggcctattcccaacccta 3357464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 41399472 - 41399330
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || |||||||  |||||||| |||| |  ||||||| ||    
T  41399472 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggtcaggccaggccaggcttaaacaggcca 41399374  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  41399373 ggccataggcccctgtaggccggcctggcctattcccaacccta 41399330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 41892508 - 41892650
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||  || ||||||||  |||| || ||||  ||||||||||| |||| |||| | || ||||||| |||||||||||||| |  ||||||| ||    
T  41892508 agcctaagtctggcctatttacttaaataggctttttaaaaagcctaagccta-gtctttttaataaacaggccaggccagaccaggcttaaacaggcca 41892606  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  | ||||| |||||| |||||||||    
T  41892607 ggccataggcccctgtaggccagcctggcctatttccaacccta 41892650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 4068318 - 4068371
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||| |||  ||||||| ||||||||||||||||    
T  4068318 aaacaggtcaggccataggcccctgtaggccggcctggcctattcccaacccta 4068371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 18533052 - 18532972
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||||||| ||||||| | ||||||  ||| ||| ||| || |||| |||| |||  |||||||||||||||||||||||||    
T  18533052 taaacaggccaggcctggccagacttaaataggccagaccataggcccctgtaggccggcctgacctattcccaaccctac 18532972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 34002398 - 34002338
Alignment:
Q  117 cagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| | |||| |||| |||||| |||||||| ||||| || ||||||||||||||||    
T  34002398 cagaccatagcaggccaggtcgtaggcccctataggtcggcatggcctattcccaacccta 34002338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 34002473 - 34002401
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacag 104  Q
    ||||||||||| |||||||||||||||||||  ||||  | ||||||||| | | || || ||||||||||||    
T  34002473 gaagcctaagcctgacctatttaactaaacatgctttttataaagcctaagcatgtgcctctctactaaacag 34002401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 36113525 - 36113701
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||    
T  36113525 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggtctatctactaa 36113624  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||||||||| ||||||||||| |||| |||  ||||||| ||||||||||||||||    
T  36113625 acagtccaggccaggccaggccaaaacaggccaggccgtaggcccctgtaggccggcctggcctattcccaacccta 36113701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 27054210 - 27054034
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| |||||| |||||||||| |||| | |||||||||||    
T  27054210 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttcctaaaagcctaagcctaggcctatctactaa 27054111  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||||||||| ||||||||||| |||| |||  ||||||| ||||||||||||||||    
T  27054110 acagtccaggccaggccaggccaaaacaggccaggccgtaggcccctgtaggccggcctggcctattcccaacccta 27054034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 18295589 - 18295765
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||||  ||| |||| | |||||||||||    
T  18295589 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaaggttaagcctaggcctatctactaa 18295688  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    | |||||||||||| |||| |||||||||| |||| ||||||||||| ||| |||||||| ||||||||||||||||    
T  18295689 atagtccaggccaggccaggccaaaacaggccaggtcgtaggtccctgtaggtcggcctggcctattcccaacccta 18295765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 18158796 - 18158967
Alignment:
Q  7 ctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtc 106  Q
    ||||||||||||||||||       ||||||||||| || ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||||||||    
T  18158796 ctattaggcttaacagtctttttttgaagcctaagcctggcctatttaactaaacaggctttctaaaaagcctaagcctaagcctatctactaaacagtc 18158895  T
Q  107 caggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||||||| |||| ||||||||||  |||||||||| |||| |||  ||||||| |||||||||||||||||    
T  18158896 caggccaggccaggccaaaacaggctaggccgtaggcccctgtaggccggcctggcctattcccaaccctac 18158967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 15677889 - 15677713
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  15677889 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 15677790  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||  ||  ||| |||||||||| |||||| |||| |||| |||  ||||||| ||||||||||||||||    
T  15677789 acagtccaggttaggtcaggccaaaacaggccaggccctaggcccctgtaggccggcctggcctattcccaacccta 15677713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 11877867 - 11878038
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       ||||||||| |||||| ||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||||    
T  11877867 cctattaggcttaacagtctttttttgaagcctaaacttgacatatttaactaaacaggctttctaaaaagcctaagcctaggtctatctactaaacagt 11877966  T
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||| |||||  ||| |||||||||| ||| ||||||| |||| |||| || || | ||||||||||||||||    
T  11877967 ccaagccaggtcaggccaaaacaggccagaccgtaggcccctgtagaccgaccaggcctattcccaacccta 11878038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 15397975 - 15398110
Alignment:
Q  7 ctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtc 106  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||    
T  15397975 ctattaggcttaacagtctttttttgaagcctaagcttgacctatttaactaaacagactttctaaaaagcctaagcctaagcctatctactaaacagtc 15398074  T
Q  107 caggccagaccagaccaaaacaggtcaggccgtagg 142  Q
    ||||||||  ||| |||||||| | |||||||||||    
T  15398075 caggccaggtcaggccaaaacaagccaggccgtagg 15398110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 14949207 - 14949062
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||| |||||||||||||||||||| ||||  ||||||||||| |||| ||||||||||||||||| ||||||||| |||| ||||||||||     
T  14949207 gaagcctaagcctgacctatttaactaaacagcctttttaaaaagcctaagcctaagtctatctactaaacaggccaggccaggccaggccaaaacaggc 14949108  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||||| |||| |||  | ||||| ||||||||||||||||    
T  14949107 cagggcgtaggcccctgtaggccagcctggcctattcccaacccta 14949062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 10018204 - 10018348
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||| || ||||||||||||||||| ||||  ||||||||||| |||| | ||||||||||||||| |||||| || |||| |||||||||||    
T  10018204 gaagcctaagcctggcctatttaactaaacaggctttttaaaaagcctaagccta-gcctatctactaaacaggccaggctaggccaggccaaaacaggt 10018302  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||| ||||||| |||| |||  | ||||| ||||||||||||||||    
T  10018303 cagaccgtaggcccctgtaggccagcctggcctattcccaacccta 10018348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 17869759 - 17869593
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       ||||||||||| || |||||||||||||| || ||||||||||||||||| |||| | |||||||||||    
T  17869759 gccggcctattaggcttaacagtctttttttgaagcctaagcctggcctatttaactaaataggctttccaaaaagcctaagcctaggcctatctactaa 17869660  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||||          |||||||||| ||||||||||| ||||||||  ||||||| ||||||||||||||||    
T  17869659 acaggccagg----------ccaaaacaggccaggccgtaggcccctataggccggcctggcctattcccaacccta 17869593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 38255109 - 38255288
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||| ||       |||||||||  ||||||||||||||||||||  ||||| |||||||||||  ||||| ||||||||||||||||    
T  38255109 cctattaggcttaacaatctttttttgaagcctaaatttgacctatttaactaaacaagctttctaaaaagcctaagtctatgcctatctactaaacagt 38255208  T
Q  106 ccaggccag----------accagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccc 175  Q
    |||||||||          | |||  ||||||||| ||||||||||  |||| |||||||||||||||||||||||||||    
T  38255209 ccaggccaggtcaagccaaaacaggtcaaaacaggccaggccgtagacccctgtagatcggcctgacctattcccaaccc 38255288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 31624559 - 31624721
Alignment:
Q  8 tattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtcc 107  Q
    |||||||||||||||||       |||| |||||||   ||||||||||||||||| ||||| ||||||||||| |||| | |||||||| |||||||      
T  31624559 tattaggcttaacagtctttttttgaagtctaagctctgcctatttaactaaacaggctttctaaaaagcctaagcctacgcctatctacaaaacagt-- 31624656  T
Q  108 aggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccc 175  Q
       |||||||||||||||| |||| |||||||||  |||| |||  ||||||||||||||||||||||    
T  31624657 ---ccagaccagaccaaaataggttaggccgtagacccctgtaggccggcctgacctattcccaaccc 31624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 13916453 - 13916372
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggcca 113  Q
    ||||||||||  |||||||||||||||||||||||||  ||||| ||||| |||| ||||||||||||||||| ||||||||    
T  13916453 gaagcctaagtctgacctatttaactaaacagactttttaaaaaacctaagcctaagtctatctactaaacagaccaggcca 13916372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 9163798 - 9163940
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| ||||  ||| | || ||||||| ||||||||| |||| |  ||||||| ||    
T  9163798 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagcctaa-tctttttaataaacaggccaggccaggccaggcttaaacaggcca 9163896  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| ||||||||  ||||||| ||||||||||||||||    
T  9163897 ggccataggcccctataggccggcctggcctattcccaacccta 9163940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 28209929 - 28209873
Alignment:
Q  121 ccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||||||||| | |||| ||||  |||||||||||||||||||||||    
T  28209929 ccaaaacaggtcaggccgtaagcccctgtagactggcctgacctattcccaacccta 28209873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 491611 - 491753
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  491611 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 491709  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  491710 ggccataggcccctgtaggccggcctggcctattcccaacccta 491753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 40084396 - 40084508
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       ||||||||||| || ||||||||||| ||||  ||||  |||||||||||      | |||||||||||    
T  40084396 gccggcctattaggcttaacagtctttttttgaagcctaagcctggcctatttaactgaacatgctttttaaaaagcctaa------gcctatctactaa 40084489  T
Q  101 acagtccaggccagaccag 119  Q
    |||||||||||||| ||||    
T  40084490 acagtccaggccaggccag 40084508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 10932039 - 10932118
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| |||||||||||||| |  |||||||||||||| |||| |||| |||  || |||  ||||||||||||||||    
T  10932039 taaacaggccaggccagaccaggcttaaacaggtcaggccataggcccctgtaggccgacctagcctattcccaacccta 10932118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 24427202 - 24427131
Alignment:
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |  ||||||| ||||||||||| |||| |||  ||||||  ||||||||||||||||    
T  24427202 ccaggccagaccaggcttaaacaggccaggccgtaggcccctgtaggccggcctagcctattcccaacccta 24427131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 3880802 - 3880748
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctat 87  Q
    |||||||||| |||||||||||||||||||  ||||  ||||||||||| |||||    
T  3880802 aagcctaagcctgacctatttaactaaacatgctttttaaaaagcctaagcctat 3880748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 4101628 - 4101682
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||||||| |||||| |||| |||| ||| |||||||| |||||||||||||||||    
T  4101628 aaacaggccaggccataggcccctgtaggtcggcctggcctattcccaaccctac 4101682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 6643819 - 6643766
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| |||||| |||| |||| |||  ||||||||||||||||||||||||    
T  6643819 aaacaggccaggccataggcccctgtaggccggcctgacctattcccaacccta 6643766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 12298552 - 12298723
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| | ||||||||||||||||    
T  12298552 cctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacagactttctaaaaaacctaagcctaggcctatctactaaacagt 12298651  T
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||| || ||||||||||||||| ||||||||||| |||| |||  ||||||||||||||||||||||||    
T  12298652 ccaggctaggccagaccaaaacaggccaggccgtaggcccctgtaggccggcctgacctattcccaacccta 12298723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 15850221 - 15850397
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| | |||||||||||    
T  15850221 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttccaaaaagcctaagcctaggcctatctactaa 15850320  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||||||||| ||| ||||||| |||| ||| |||||||| ||||||||||| ||||    
T  15850321 acagtccaggccaggccaggccaaaacaggccagaccgtaggcccctgtaggtcggcctggcctattcccaatccta 15850397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 18343002 - 18343147
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||     
T  18343002 gaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaaacagtccaggccagaccaggccaaaacaggc 18343101  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| |||  || |||||||||||||||||||||    
T  18343102 caggccgtaggcccctgtaggccgacctgacctattcccaacccta 18343147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 39920045 - 39920189
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||||| |||| | ||||||||||||||||||| |||||  ||| |||||||||| |    
T  39920045 aagcctaagcttggcctatttaactaaacaggcttttcaaaaagcctaagcctaggcctatctactaaacagtccaagccaggtcaggccaaaacaggcc 39920144  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||| |||| ||| |||||||| ||||||||||||||||    
T  39920145 aggccgtaggcccctgtaggtcggcctggcctattcccaacccta 39920189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 27090535 - 27090359
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| | |||||||||||    
T  27090535 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttccaaaaagcctaagcctaggcctatctactaa 27090436  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||| ||  |||| |||||||||  |||||| |||| |||| |||   || ||| ||||||||||||||||    
T  27090435 acagtccaggtcaagccaggccaaaacagaccaggccataggcccctgtaggctggtctggcctattcccaacccta 27090359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 47367222 - 47367047
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||| ||||       |||||||||||||| ||||||||||||||||  ||||| ||||||||||| |||| | |||||||||||    
T  47367222 gccggcctattaggcttaatagtctttttttgaagcctaagcttggcctatttaactaaacatgctttctaaaaagcctaagcctaggcctatctactaa 47367123  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccct 176  Q
    |||||||||||||| |||| ||||||||||||||| |||| | |||| |||  ||||||| |||||| ||| ||||    
T  47367122 acagtccaggccaggccaggccaaaacaggtcagggcgtaagcccctgtaggccggcctggcctatttccatccct 47367047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 17386022 - 17385845
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||| ||| ||| ||||||||||||| ||||| |||||| |||| |||| | |||||||||||    
T  17386022 gccggcctattaggcttaacagtctttttttgaagcctaagtttggcctgtttaactaaacaggctttctaaaaagtctaagcctaggcctatctactaa 17385923  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||||||||||||| |||  |||||||||| ||||||||||| |||| |||  ||||||  ||||||| |||||||||    
T  17385922 acagtccaggccaggccaagccaaaacaggccaggccgtaggcccctgtaggccggcctcgcctattcacaaccctac 17385845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 37535989 - 37535846
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    |||||||||| || ||||||||||||||||| ||||  ||||||||||| |||| | ||||||||||||||| ||||||||| |||| |||||||||| |    
T  37535989 aagcctaagcctggcctatttaactaaacaggctttttaaaaagcctaagccta-gcctatctactaaacaggccaggccaggccaggccaaaacaggcc 37535891  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||| |||| |||  | ||||| ||||||||||||||||    
T  37535890 aggccgtaggcccctgtaggccagcctggcctattcccaacccta 37535846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 42649716 - 42649572
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    |||||||||  ||||||||||||| |||||| ||||| |||||| |||| |||  | ||||| ||||||||| |||||||||  ||| ||||||||||||    
T  42649716 aagcctaagactgacctatttaaccaaacaggctttctaaaaagtctaagccttggcctatcaactaaacaggccaggccaggtcaggccaaaacaggtc 42649617  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||| |||| |||  ||||||| ||||||||||||||||    
T  42649616 aggccgtaggcccctgtaggccggcctggcctattcccaacccta 42649572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5499673 - 5499560
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||| ||       |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| | || ||||||||    
T  5499673 gccggcctattaggcttaacaatctttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctaggcctgtctactaa 5499574  T
Q  101 acagtccaggccag 114  Q
    ||||||||||||||    
T  5499573 acagtccaggccag 5499560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 23556187 - 23556322
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||| | || | ||||||||||||||| |||||          |||||||||||    
T  23556187 gaagcctaagcctgacctatttaactaaacagactttttaaaaagcctaagcataagcctatctactaaacaggccagg----------ccaaaacaggt 23556276  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| |||  | ||||||||||||||||||||||    
T  23556277 caggccgtaggcccctgtaggccagcctgacctattcccaacccta 23556322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 44913039 - 44913129
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagacc 122  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||||| ||||   ||||||||||||||||||||||||| |||||||    
T  44913039 gaagcctaagcttgacctatttaactaaacaagctttctaaaaagcctaagcctagacctatctactaaacagtccaggccaggccagacc 44913129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 38671845 - 38671727
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       ||||||||| |||| ||||||||||||||||| ||||| ||||||||||  |||| | |||||||||||    
T  38671845 gccggcctattaggcttaacagtctttttttgaagcctaaacttggcctatttaactaaacaggctttctaaaaagcctaggcctaggcctatctactaa 38671746  T
Q  101 acagtccaggccagaccag 119  Q
    |||||||||||||| ||||    
T  38671745 acagtccaggccaggccag 38671727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 6305456 - 6305600
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    ||||||||||||| |||||||||| |||||| ||||| ||||||||||| |||  | ||||| |  |||||| ||| ||||| |||| |||||||||| |    
T  6305456 aagcctaagcttggcctatttaaccaaacaggctttctaaaaagcctaagccttggcctatcaataaaacagaccaagccaggccaggccaaaacaggcc 6305555  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||| |||||| |||| |||  ||||||| ||||||||||||||||    
T  6305556 aggtcgtaggcccctgtaggccggcctggcctattcccaacccta 6305600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16452787 - 16452899
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       || ||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  16452787 gccggcctattaggcttaacagtctttttttgaggcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 16452886  T
Q  101 acagtccaggcca 113  Q
    |||| ||||||||    
T  16452887 acaggccaggcca 16452899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16461939 - 16462051
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       || ||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  16461939 gccggcctattaggcttaacagtctttttttgaggcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 16462038  T
Q  101 acagtccaggcca 113  Q
    |||| ||||||||    
T  16462039 acaggccaggcca 16462051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 5616937 - 5617015
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggc 111  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||||||    
T  5616937 aagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaaacagtccaggc 5617015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 15321581 - 15321499
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccag 114  Q
    |||| |||||| |||||||||||||||||||||||||  ||||||||||| |||| ||||||||||||||||| |||||||||    
T  15321581 gaagtctaagcctgacctatttaactaaacagactttttaaaaagcctaagcctaagtctatctactaaacaggccaggccag 15321499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 19507468 - 19507636
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||        ||| ||||||||| ||||||||||||||||| ||||| ||||| ||||| |||| | |||||||||||    
T  19507468 gccggcctattaggcttaacagtctttttttaaagtctaagcttggcctatttaactaaacaggctttctaaaaaacctaagcctaggcctatctactaa 19507567  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||||||||||          |||||||||| ||||||||||| |||| |||  | ||||| ||||||||||||||||||    
T  19507568 acagtccagg----------ccaaaacaggccaggccgtaggcccctgtaggccagcctggcctattcccaaccctacc 19507636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 5506579 - 5506458
Alignment:
Q  7 ctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtc 106  Q
    ||||||||||||||||||       ||||||||| |||| ||||||||||||||||||||||| |||||| |||| |||| | ||||||||||||||| |    
T  5506579 ctattaggcttaacagtctttttttgaagcctaaacttggcctatttaactaaacagactttctaaaaagtctaagcctaggcctatctactaaacaggc 5506480  T
Q  107 caggccagaccagaccaaaaca 128  Q
    ||||  || |||| ||||||||    
T  5506479 caggttaggccaggccaaaaca 5506458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 26257800 - 26257922
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||| ||       |||||||||||||| | ||||||||||||||| ||||| ||||||||||| | || | |||||||||||    
T  26257800 gccggcctattaggcttaacaatctttttttgaagcctaagcttggcatatttaactaaacaggctttctaaaaagcctaagcttaggcctatctactaa 26257899  T
Q  101 acagtccaggccagaccagacca 123  Q
    |||| |||||||| | |||||||    
T  26257900 acaggccaggccaaaacagacca 26257922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13077705 - 13077818
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||| ||| ||||  |||||||||||  |||   |||||||||||    
T  13077705 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaatcaggctttgtaaaaagcctaagtctagacctatctactaa 13077804  T
Q  101 acagtccaggccag 114  Q
    ||||||||||||||    
T  13077805 acagtccaggccag 13077818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 44779230 - 44779126
Alignment:
Q  73 aaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaa 172  Q
    ||||||||| |||| | ||||||||||||||||||||||||| |||  |||||||||  ||| ||||||| |||| ||| |||| ||| |||||||||||    
T  44779230 aaagcctaagcctaggcctatctactaaacagtccaggccaggccatgccaaaacagaccagaccgtaggcccctgtaggtcggtctggcctattcccaa 44779131  T
Q  173 cccta 177  Q
    |||||    
T  44779130 cccta 44779126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 13253628 - 13253778
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  |||||||||||||||| | || | || ||||||| ||||||||| |||| |  ||||||||||    
T  13253628 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaaaccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggtca 13253726  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctaccaccaac 185  Q
    |||| |||  |||| |||  || ||||||||||||||||||||||| |||||    
T  13253727 ggccatagacccctgtaggccgacctgacctattcccaaccctacctccaac 13253778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 42384600 - 42384707
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       ||||| |||||||||||||||||||||||||  ||||| |||||||||||      | |||||||||||    
T  42384600 gccggcctattaggcttaacagtctttttttgaagcttaagcttgacctatttaactaaacatgctttctaaaaagcctaa------gcctatctactaa 42384693  T
Q  101 acagtccaggccag 114  Q
    ||||||||||||||    
T  42384694 acagtccaggccag 42384707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 39860204 - 39860062
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  39860204 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 39860106  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  39860105 ggccataggcccctgtaggccggcctggcctattcccaacccta 39860062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 29522778 - 29522668
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| ||||||||||||||| |||       ||||||||| |||  |||||||||||||| || ||||| |||||||||||||||| | ||||||| |||    
T  29522778 gccggcctattaggcttaacggtctttttttgaagcctaaactttgcctatttaactaaataggctttctaaaaagcctaaacctaggcctatcta-taa 29522680  T
Q  101 acagtccaggcc 112  Q
    |||| |||||||    
T  29522679 acaggccaggcc 29522668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 34049686 - 34049608
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccagg 110  Q
    ||||||||||| |||||||||||||| ||||| ||||  ||||||||||| |||| | ||||||||||| ||| |||||    
T  34049686 gaagcctaagcctgacctatttaactcaacaggctttttaaaaagcctaagcctaagcctatctactaagcagaccagg 34049608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 52223110 - 52223254
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  52223110 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 52223208  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||||    
T  52223209 ggccataggcccctgtaggccggcctggcctattcccaaccctacc 52223254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 46847143 - 46847286
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || |||||||  ||||||||||||| |  ||||||| ||    
T  46847143 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggtcaggccagaccaggcttaaacaggcca 46847241  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||| |||| |||  ||||||| |||||||||||||||||    
T  46847242 ggccataggcccctgtaggccggcctggcctattcccaaccctac 46847286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 17806193 - 17806335
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  17806193 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 17806291  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  17806292 ggccataggcccctgtaggccggcctggcctattcccaacccta 17806335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 33785649 - 33785728
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| ||||||||| |||| |  ||||||| |||||| |||| ||||||||  ||||||| ||||||||||||||||    
T  33785649 taaacaggccaggccaggccaggcttaaacaggccaggccataggcccctataggccggcctggcctattcccaacccta 33785728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 45372471 - 45372392
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||  ||||||||||||| |  |||||||||||||| |||  |||| ||| |||||||| ||||||||||||||||    
T  45372471 taaacaggtcaggccagaccaggcttaaacaggtcaggccatagccccctgtaggtcggcctggcctattcccaacccta 45372392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 50096781 - 50096639
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| |||||||  ||||||||||| |||| | || | || ||||||| ||||||||   ||| |  ||||||| ||    
T  50096781 agcctaagcctgacctatttacttaaatagactttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaagtcaggcttaaacaggcca 50096683  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  50096682 ggccataggcccctgtaggccggcctggcctattcccaacccta 50096639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 10312434 - 10312569
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||  || |||||||||||||||| |||||  ||||||||||| |||| | |||| ||||||||||  ||||          ||||||||||     
T  10312434 gaagcctaagtctggcctatttaactaaacaaactttttaaaaagcctaagcctaagcctatatactaaacaggtcagg----------ccaaaacaggc 10312523  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| |||  | ||||| ||||||||||||||||    
T  10312524 caggccgtaggcccctgtaggccagcctggcctattcccaacccta 10312569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 8417612 - 8417754
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| |||||||||  ||| |  ||||||| ||    
T  8417612 agcctaagcctgccctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggtcaggcttaaacaggcca 8417710  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  8417711 ggccataggcccctgtaggccggcctggcctattcccaacccta 8417754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 18353517 - 18353572
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||||||| |||||| |||| |||| |||  ||||||||||||||||||||||||||    
T  18353517 aaacaggccaggccataggcccctgtaggccggcctgacctattcccaaccctacc 18353572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 19708641 - 19708586
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||||||| |||||| |||| ||||||||  ||||||| ||||||||||||||||||    
T  19708641 aaacaggccaggccataggcccctataggccggcctggcctattcccaaccctacc 19708586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 2989036 - 2989148
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  |||||||||||||||| | || | || |||||||  |||||||||||||||  |||||||| |    
T  2989036 agcctaagcatggcctatttacttaaataggctttttaaaaagcctaaaccta-gcctttttaataaacaggtcaggccagaccagacttaaacaggtta 2989134  T
Q  134 ggccgtaggtccct 147  Q
    |||| |||| ||||    
T  2989135 ggccataggcccct 2989148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 18700879 - 18700805
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagccta 80  Q
    |||||||||||||||| ||       |||||||||||||  ||||||||||||||||| ||| | ||||||||||    
T  18700879 cctattaggcttaacaatctttttttgaagcctaagctttgcctatttaactaaacaggcttcctaaaaagccta 18700805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 32238965 - 32238912
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| || ||| |||| |||| |||| ||||||||||||||||||||||||    
T  32238965 aaacaggccaagccataggcccctgtagaccggcctgacctattcccaacccta 32238912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 31955318 - 31955270
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaa 81  Q
    |||||||||| ||||||||||||||||| || ||||  |||||||||||    
T  31955318 aagcctaagcctgacctatttaactaaatagtctttttaaaaagcctaa 31955270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 50636889 - 50636711
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    ||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| |||||| |||| | || | |||||||||||    
T  50636889 gccgacctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacagactttctaaaaagtctaagcttaggcctatctactaa 50636790  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||||| ||||||||  ||| |||||||||||||||||||||| |||| |||  |||| |||||||||||||||||||||    
T  50636789 acagttcaggccaggtcaggccaaaacaggtcaggccgtaggcccctgtaggccggcttgacctattcccaaccctacc 50636711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 17981008 - 17980832
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||| ||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||| ||||||    
T  17981008 gccggcctattaggcttaacaatctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatgtactaa 17980909  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||| |||| |||| |||||||||  ||||||||||| |||| |||  ||||||| ||||||||||||||||    
T  17980908 acagtccagaccaggccaggccaaaacagaccaggccgtaggcccctgtaggccggcctggcctattcccaacccta 17980832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 3095192 - 3095046
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||| || ||||  ||  |||||||||| |    
T  3095192 aagcctaagcttgacctatttaactaaacaggctttccaaaaagcctaagcctaggcctatctactaaacagtctagaccaggtcaagccaaaacaggcc 3095093  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||||| |||| |||| |||  ||||||| ||||||||||||||||||    
T  3095092 aggccataggcccctgtaggccggcctggcctattcccaaccctacc 3095046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 36489135 - 36489306
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| ||||||||||||| |||||       ||||||||| |||| ||||||||||||||||||||||| ||||||||||  |||||      |||||||    
T  36489135 gccggcctattaggcttagcagtctttttttgaagcctaaacttggcctatttaactaaacagactttctaaaaagcctaggcctat------ctactaa 36489228  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||||||||||||||||||| ||||||||||||||| |||||| |||| |||  ||||||| |||||||||||||||||    
T  36489229 acagtccaggccagaccaggccaaaacaggtcagggcgtaggcccctgtagggcggcctggcctattcccaaccctac 36489306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 12582541 - 12582687
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    |||||||||||||| ||||||||| |||||||  |||| ||||  ||||| |||| | ||||||||||||||||||||||||| |||| ||||||||||     
T  12582541 gaagcctaagcttggcctatttaattaaacagggtttctaaaactcctaagcctaggcctatctactaaacagtccaggccaggccaggccaaaacaggc 12582640  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||||||||||| |||| |||  ||||||| |||||||||||||||||    
T  12582641 caggccgtaggcccctgtaggccggcctggcctattcccaaccctac 12582687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 48659764 - 48659908
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    ||||||||| |||||||||||||| |||||||||||| |||||| ||||  ||  | ||||| ||||||||| ||||| |||| ||||||||||||||||    
T  48659764 aagcctaagattgacctatttaaccaaacagactttctaaaaagtctaagtcttggcctatcaactaaacaggccaggtcagatcagaccaaaacaggtc 48659863  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||| |||| |||  || |||||||||||||||||||||    
T  48659864 aggccgtaggcccctgtaggccgacctgacctattcccaacccta 48659908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 49389843 - 49390020
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||| ||| ||||||||||||||||| ||||| ||||| ||||| |||| | |||||||||||    
T  49389843 gccggcctattaggcttaacagtctttttttgaagcctaagtttggcctatttaactaaacaggctttctaaaaaacctaagcctaggcctatctactaa 49389942  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatc-ggcctgacctattcccaacccta 177  Q
    ||||||||| |||| |||| |||||||||| ||||||||||| |||| | |  | |||||| ||||||||||||||||    
T  49389943 acagtccagaccaggccaggccaaaacaggccaggccgtaggcccctgtcggcctggcctggcctattcccaacccta 49390020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 31843254 - 31843382
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||    
T  31843254 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacagactttctaaaaagcctaagcctatgcctatttactaa 31843353  T
Q  101 acagtccaggccagaccagaccaaaacag 129  Q
    |||||||||| |||| ||| |||||||||    
T  31843354 acagtccaggtcagatcaggccaaaacag 31843382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 45783623 - 45783508
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  45783623 gccggcctattaggcttaacagtctttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 45783524  T
Q  101 acagtccaggccagac 116  Q
    |||||||||| |||||    
T  45783523 acagtccaggtcagac 45783508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 42431469 - 42431356
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||| ||       |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||   |||||||||||    
T  42431469 gccggcctattaggcttaacaatctttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctagacctatctactaa 42431370  T
Q  101 acagtccaggccag 114  Q
    ||||||||||||||    
T  42431369 acagtccaggccag 42431356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 29590181 - 29590065
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||   |||||||||||    
T  29590181 gccggcctattaggcttaacagtctttttttgaaggctaagcttggcctatttaactaaacagactttctaaaaagcctaagcctagacctatctactaa 29590082  T
Q  101 acagtccaggccagacc 117  Q
    ||||||||| |||||||    
T  29590081 acagtccagaccagacc 29590065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 33240054 - 33240161
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       |||||||||||||| ||||||||||||||||  ||||| ||||||||||| |||| | ||||||||||||||||    
T  33240054 cctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacatgctttctaaaaagcctaagcctaggcctatctactaaacagt 33240153  T
Q  106 ccaggcca 113  Q
    ||||||||    
T  33240154 ccaggcca 33240161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 20392593 - 20392460
Alignment:
Q  44 tgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtcaggccgtaggt 143  Q
    ||||||||||||| |||||  ||||| ||||||||||| |||  | ||||| ||||||||| |||| |||||||||  ||||||||| ||||||||||      
T  20392593 tgacctatttaaccaaacatgctttctaaaaagcctaagccttgggctatcaactaaacaggccagaccagaccaggtcaaaacaggccaggccgtagac 20392494  T
Q  144 ccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||  |||| || ||||||||||||||||    
T  20392493 ccctgtaggccggcttggcctattcccaacccta 20392460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 10010610 - 10010468
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    |||||||||||| ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||||||||||  ||||||| ||    
T  10010610 agcctaagcttggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccagaccagacttaaacaggcca 10010512  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  10010511 ggccataggcccctgtaggccggcctggcctattcccaacccta 10010468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 41487829 - 41487972
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| |||||||  ||||||||||| ||||   || | || ||||||| ||||||||| ||||||  ||||||| ||    
T  41487829 agcctaagcctgacctatttacttaaatagactttttaaaaagcctaagcctaac-ctttttaataaacaggccaggccaggccagacttaaacaggcca 41487927  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||| |||| |||  ||||||| |||||||||||||||||    
T  41487928 ggccataggcccctgtaggccggcctggcctattcccaaccctac 41487972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22270126 - 22270027
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| ||||||||||||||||| |       ||||||||||| |||||||||||||||| || |||||| ||||||||||| |||| | |||||||||||    
T  22270126 gccggcctattaggcttaacaggcttttctggaagcctaagcctgacctatttaactaatcatactttctaaaaagcctaagcctaggcctatctactaa 22270027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 38307815 - 38307673
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| |||||||||||||| |  ||||||| ||    
T  38307815 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccagaccaggcttaaacaggcca 38307717  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  38307716 ggccataggcccctgtaggccggcctggcctattcccaacccta 38307673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 4422508 - 4422593
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagacc 117  Q
    ||||| ||||| |||||||||||||||||||   |||  ||||||||||| |||| |||||| |||||||||  ||||||||||||    
T  4422508 gaagcttaagcctgacctatttaactaaacaagttttttaaaaagcctaagcctaagtctatatactaaacaagccaggccagacc 4422593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 35041556 - 35041454
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    ||||||||||||| |||||||| |       ||||||||||| ||  ||||||||||||| |||||||  ||||||| |||||||| | |||||||||||    
T  35041556 gccgacctattagacttaacaggcttttctggaagcctaagcctggtctatttaactaaagagactttttaaaaagcataaacctaagcctatctactaa 35041457  T
Q  101 aca 103  Q
    |||    
T  35041456 aca 35041454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 11845122 - 11844979
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| ||||   || | || ||||||| |||||||||||||  |  ||||||| ||    
T  11845122 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagcctaac-ctttttaataaacaggccaggccagaccatgcttaaacaggcca 11845024  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||| ||||||||  ||||||| |||||||| ||||||||    
T  11845023 ggccataggcccctataggccggcctggcctattccaaaccctac 11844979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 40730180 - 40730037
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  40730180 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 40730082  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||| |||| |||  ||||||| |||||||||||||||||    
T  40730081 ggccataggcccctgtaggccggcctggcctattcccaaccctac 40730037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 37010749 - 37010607
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| |||| | || | || |||| || ||||||||| |||| |  ||||||| ||    
T  37010749 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaataggccaggccaggccaggcttaaacaggcca 37010651  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  37010650 ggccataggcccctgtaggccggcctggcctattcccaacccta 37010607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 47691960 - 47692102
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| |||||||||||||| |  ||||||| ||    
T  47691960 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccagaccaggcttaaacaggcca 47692058  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||  |||| |||  ||||||| ||||||||||||||||    
T  47692059 ggccatagacccctgtaggccggcctggcctattcccaacccta 47692102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 32212571 - 32212711
Alignment:
Q  36 cctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtcagg 135  Q
    ||||||| |||||||||||  |||| |||||||  ||||||||||| |||| | || | || ||||||| |||| |||| |||| |  |||||||||| |    
T  32212571 cctaagcctgacctatttacttaaatagactttttaaaaagcctaagccta-gcctttttaataaacaggccagaccaggccaggcttaaacaggtcaag 32212669  T
Q  136 ccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    || |||| |||| |||  ||||||| | ||||||||||||||    
T  32212670 ccataggcccctgtaggccggcctggcttattcccaacccta 32212711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 517979 - 518051
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacag 104  Q
    |||||||||  ||| ||||||||||||||||| ||||| |||||||| |  |||| | |||||||||||||||    
T  517979 gaagcctaaatttggcctatttaactaaacaggctttctaaaaagcccaggcctaggcctatctactaaacag 518051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 39787369 - 39787290
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||| ||| ||||||||||||  ||||||| ||| || |||| | || |||  ||||||||||||||||||||||||    
T  39787369 taaacaggccatgccagaccagacttaaacaggccagaccataggcctctgtaggccggcctgacctattcccaacccta 39787290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 518046 - 518099
Alignment:
Q  124 aaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||||||||||| | || |||  |||||||| |||||||||||||||    
T  518046 aaacaggtcaggccgtaggccactgtaggccggcctgaactattcccaacccta 518099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 48826381 - 48826524
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| |||||||||||||| |  ||||||| ||    
T  48826381 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccagaccaggcttaaacaggcca 48826479  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||  |||| | || |||  ||||||| ||||||||| |||||||    
T  48826480 ggctataggcctctgtaggccggcctggcctattccctaccctac 48826524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 32187050 - 32186873
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| |||||| |||| |||| | |||||||||||    
T  32187050 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagtctaagcctaggcctatctactaa 32186951  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||||||||||||  |||| |||||||||| ||||||||||| |||| |||  |||||||||||||||||||||||||    
T  32186950 acagtccaggccatgccaggccaaaacaggccaggccgtaggcccctgtaggccggcctgacctattcccaaccctac 32186873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 1101599 - 1101775
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||    
T  1101599 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaa 1101698  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||| |||||||||| ||||||||||| |||| |||  ||||||  ||||||||||||||||    
T  1101699 acagtccaggccaggccaggccaaaacaggccaggccgtaggcccctgtaggccggcctagcctattcccaacccta 1101775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 4229542 - 4229370
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    ||||||||||||||||||        |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||||| |    
T  4229542 cctattaggcttaacagtatttttttgaagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctaggcctatctactaaacaat 4229443  T
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||||| ||| |||| |||||||||| ||||||||||| || | |||  ||||||| |||||||||||||||||    
T  4229442 ccaggtcaggccaggccaaaacaggccaggccgtaggcccatgtaggccggcctggcctattcccaaccctac 4229370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 14500411 - 14500587
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||||||||||| ||||||||||||||||  ||||| ||||||||||| |||| | |||||||||||    
T  14500411 gccggcctattaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacatgctttctaaaaagcctaagcctaagcctatctactaa 14500510  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||||||||||||| |||  ||||||||||  |||||||||| ||||||||  ||  ||||||||||||||||||||    
T  14500511 acagtccaggccaggccatgccaaaacaggctaggccgtaggcccctataggccgatctgacctattcccaacccta 14500587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 4173938 - 4173761
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||||||||||||||||||       |||||| ||||||||||||||||||||||||  ||||| ||||||||||| |||| | |||||||||||    
T  4173938 gccggcctattaggcttaacagtctttttttgaagccaaagcttgacctatttaactaaacaagctttctaaaaagcctaagcctaggcctatctactaa 4173839  T
Q  101 acagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||| |||||||||| |||| ||||| |||| ||| ||||||| |||| |||  ||| ||| |||||||||||||||||    
T  4173838 acaatccaggccaggccaggccaaagcaggccagaccgtaggcccctgtaggccggtctggcctattcccaaccctac 4173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 1559013 - 1559131
Alignment:
Q  1 gccgacctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaa 100  Q
    |||| |||| ||||||||||||||       |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| | |||||||||||    
T  1559013 gccggcctactaggcttaacagtctttttttgaagcctaagcttggcctatttaactaaacaggctttccaaaaagcctaagcctaggcctatctactaa 1559112  T
Q  101 acagtccaggccagaccag 119  Q
    |||||||||||||| ||||    
T  1559113 acagtccaggccaggccag 1559131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 13041408 - 13041300
Alignment:
Q  6 cctattaggcttaacagtcnnnnnnngaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagt 105  Q
    |||||||||||||||||||       ||||||||||| || ||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||    
T  13041408 cctattaggcttaacagtctttttttgaagcctaagcctggcctatttaactaaacaggctttccaaaaagcctaagcctaggcctatctactaaacagt 13041309  T
Q  106 ccaggccag 114  Q
    |||||||||    
T  13041308 ccaggccag 13041300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 17156662 - 17156806
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    ||||||||||  || ||||||||||||||||||||||  ||||||||||| |||| | || ||||||||||||  ||||| || |||| ||||||||||     
T  17156662 gaagcctaagtctggcctatttaactaaacagactttttaaaaagcctaagccta-gcctgtctactaaacaggtcaggctaggccaggccaaaacaggc 17156760  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    ||||||||||| |||| |||  | ||||| ||||||||||||||||    
T  17156761 caggccgtaggcccctgtaggccagcctggcctattcccaacccta 17156806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 34858572 - 34858712
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||  ||| ||||   ||||||||||||||||||||     |||||||||||| | ||    
T  34858572 gaagcctaagcttggcctatttaactaaacaaactttctaaaaagtttaagcctagacctatctactaaacagtccag-----accagaccaaaatatgt 34858666  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |  |||||||| |||| |||  ||||||||||||||||||||||||    
T  34858667 cccgccgtaggcccctgtaggccggcctgacctattcccaacccta 34858712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 3257506 - 3257650
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  3257506 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 3257604  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    |||| |||| ||||||||  ||||||| ||||||||||||||||||    
T  3257605 ggccataggcccctataggccggcctggcctattcccaaccctacc 3257650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 32158417 - 32158492
Alignment:
Q  54 aactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacag 129  Q
    |||||||||||||||| || |||||||| | || | ||||||||||||||| |||| |||||||||||||||||||    
T  32158417 aactaaacagactttctaataagcctaagcttaggcctatctactaaacaggccagaccagaccagaccaaaacag 32158492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 3027027 - 3026885
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  3027027 agcctaagcctgacctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 3026929  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  3026928 ggccataggcccctgtaggccggcctggcctattcccaacccta 3026885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 13276945 - 13277087
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| |||||||||||||| |  ||||||| ||    
T  13276945 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccagaccaggcttaaacaggcca 13277043  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| |||| |||  ||||||| ||||||||||||||||    
T  13277044 ggccataggcccctgtaggccggcctggcctattcccaacccta 13277087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 178
Target Start/End: Complemental strand, 17607796 - 17607661
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtc 132  Q
    |||| ||||| ||||||||||||||||||||  ||| ||||||||||||  ||| || |||||||||||          ||| |||||||||||||||||    
T  17607796 aagcttaagcctgacctatttaactaaacaggtttttcaaaaagcctaagtctaagtttatctactaaa----------caggccagaccaaaacaggtc 17607707  T
Q  133 aggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||| |||||| |||| |||  | || |||||||||| |||||||||    
T  17607706 aggacgtaggcccctgtaggccagcatgacctattctcaaccctac 17607661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 478856 - 478775
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccag 114  Q
    |||||||||| ||||||||||||| |||||| ||||| ||||||||||| |||  | ||||| ||||||||| |||| ||||    
T  478856 aagcctaagcctgacctatttaaccaaacaggctttctaaaaagcctaagccttggcctatcaactaaacaggccagaccag 478775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 8437328 - 8437189
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||| | |||||||||||  |||| || ||||  ||||||||||||||||   || | || ||||||| ||||||||| ||||||  ||||||||||    
T  8437328 agcctaaacctgacctatttacttaaataggctttttaaaaagcctaaacctaac-ctttttaataaacaggccaggccaggccagacttaaacaggtca 8437230  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacc 174  Q
    |||| |||| |||| |||  || |||| |||||||||||||    
T  8437229 ggccataggcccctgtaggccgacctggcctattcccaacc 8437189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 28890647 - 28890504
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  28890647 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 28890549  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||| |||| |||| |||  ||||||| |||||||||||||||||    
T  28890548 ggccataggcccctgtaggccggcctggcctattcccaaccctac 28890504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 12296592 - 12296521
Alignment:
Q  106 ccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| ||||||||| |  ||||||| |||||| |||| |||| ||| ||| |||||||||||||||||||||    
T  12296592 ccagaccagaccaggcttaaacaggccaggccataggcccctgtaggtcgacctgacctattcccaacccta 12296521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 14610386 - 14610244
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| |||||||||||  |||| |||||||  |||||||||||||||| | || | || |||||||  |||| ||| |||| |  ||  ||| ||    
T  14610386 agcctaagcctgacctatttacttaaatagactttttaaaaagcctaaaccta-gcctttttaataaacaggtcagggcaggccaggcttaactaggcca 14610288  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| ||||||||| |||  ||||||  ||||||||||||||||    
T  14610287 ggccataggtccctgtaggccggcctagcctattcccaacccta 14610244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 3728728 - 3728648
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    |||||||  |||||||| ||||||  ||||||| |||||| |||  |||| |||  |||||||||||||||| ||||||||    
T  3728728 taaacaggacaggccaggccagacttaaacaggccaggccatagacccctgtaggccggcctgacctattccaaaccctac 3728648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 24012353 - 24012425
Alignment:
Q  107 caggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctacc 179  Q
    ||||||||||||| |  ||||||| ||| || |||| |||| |||  ||||||| ||||||||||||||||||    
T  24012353 caggccagaccaggcttaaacaggccagaccataggcccctgtaggccggcctggcctattcccaaccctacc 24012425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 9536 - 9681
Alignment:
Q  32 gaagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggt 131  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||| |||||||||||||||  ||| ||||||||||     
T  9536 gaagcctaagcttgacctatttaactaaacaggctttctaaaaagcctaagcctatgcctatctact-aacagtccaggccaggtcaggccaaaacaggc 9634  T
Q  132 caggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
     ||||||||| ||| | |||  |||||||||||||||||||||||||    
T  9635 taggccgtagatccttgtaggccggcctgacctattcccaaccctac 9681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 178
Target Start/End: Complemental strand, 1490 - 1340
Alignment:
Q  33 aagcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccaga-----ccaaaac 127  Q
    |||||||||  || |||||||||| |||||| ||||| ||||||||||| |||    ||||| ||||||||| ||||||||| ||||      |||||||    
T  1490 aagcctaagactggcctatttaaccaaacaggctttctaaaaagcctaagccttgacctatcaactaaacaggccaggccaggccaggtcaggccaaaac 1391  T
Q  128 aggtcaggccgtaggtccctatagatcggcctgacctattcccaaccctac 178  Q
    ||| ||||||||||| |||| |||  || ||||||||||||||||||||||    
T  1390 aggccaggccgtaggcccctgtaggccgacctgacctattcccaaccctac 1340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 41281 - 41423
Alignment:
Q  34 agcctaagcttgacctatttaactaaacagactttccaaaaagcctaaacctatgtctatctactaaacagtccaggccagaccagaccaaaacaggtca 133  Q
    ||||||||| || ||||||||  |||| || ||||  ||||||||||| |||| | || | || ||||||| ||||||||| |||| |  ||||||| ||    
T  41281 agcctaagcctggcctatttacttaaataggctttttaaaaagcctaagccta-gcctttttaataaacaggccaggccaggccaggcttaaacaggcca 41379  T
Q  134 ggccgtaggtccctatagatcggcctgacctattcccaacccta 177  Q
    |||| |||| ||||||||  ||||||| ||||||||||||||||    
T  41380 ggccataggcccctataggccggcctggcctattcccaacccta 41423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 70026 - 69951
Alignment:
Q  98 taaacagtccaggccagaccagaccaaaacaggtcaggccgtaggtccctatagatcggcctgacctattcccaac 173  Q
    ||||||| ||||||||| ||||||  ||||||| |||||| |||| |||| |||  ||||||| ||||||||||||    
T  70026 taaacaggccaggccaggccagacttaaacaggccaggccataggcccctgtaggccggcctggcctattcccaac 69951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University