View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_78 (Length: 224)
Name: NF1484_high_78
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_78 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 27511724 - 27511935
Alignment:
| Q |
1 |
atggggtaaaggtaagactttgagatgagaccgggggaggagactgcgagagaagagggggcgatggggcgaaggaaagactttgagatgagattggcgg |
100 |
Q |
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| T |
27511724 |
atggggtaaaggtaagactttgagatgagaccgggggaggagactgtgagagaagagggggcgatggggcgaaggaaagactttgagatgagattggcgg |
27511823 |
T |
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| Q |
101 |
aggagacagtaagagaggaaagggtgatggagcgaaggagagaaaagacgatggggagaaggagagactttgagatgtgaccggcagacgggacggtaat |
200 |
Q |
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| T |
27511824 |
agaagacagtaagagaggaaagggcgatggagcgaaggagagaaaagacgatggggagaaggagagactttgagatgtgaccggcagacgggacggtaag |
27511923 |
T |
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| Q |
201 |
agaggagagtga |
212 |
Q |
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|||||||||||| |
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| T |
27511924 |
agaggagagtga |
27511935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 27512158 - 27512210
Alignment:
| Q |
132 |
gcgaaggagagaaaagacgatggggagaaggagagactttgagatgtgaccgg |
184 |
Q |
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| T |
27512158 |
gcgaaggagagaacaaacgatggggcgatggagagactttgagaggagaccgg |
27512210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 77422 - 77329
Alignment:
| Q |
13 |
taagactttgagatgagaccgggggaggagactgcgagagaagagggggcgatggggcgaaggaaagactttgagatgagattggcggaggaga |
106 |
Q |
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| T |
77422 |
taagactttgagatgagaccgggggaggagactgttatagaagagatggcaatggggtgaaggaaatactttgatatgagactggcggaagaga |
77329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 77323 - 77283
Alignment:
| Q |
127 |
atggagcgaaggagagaaaagacgatggggagaaggagaga |
167 |
Q |
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|||||||||| ||||||||| | |||||||||||||||||| |
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| T |
77323 |
atggagcgaaagagagaaaaaaggatggggagaaggagaga |
77283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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