View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_high_79 (Length: 224)

Name: NF1484_high_79
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_high_79
NF1484_high_79
[»] chr1 (37 HSPs)
chr1 (7-224)||(29261290-29261507)
chr1 (126-224)||(6557910-6558009)
chr1 (142-224)||(36072380-36072462)
chr1 (126-224)||(44469990-44470089)
chr1 (158-224)||(50113334-50113401)
chr1 (126-208)||(8460093-8460174)
chr1 (67-207)||(46973139-46973279)
chr1 (106-205)||(6562160-6562259)
chr1 (106-209)||(13178127-13178230)
chr1 (67-200)||(41804037-41804171)
chr1 (131-209)||(44336249-44336327)
chr1 (159-224)||(46886367-46886432)
chr1 (67-207)||(36076555-36076695)
chr1 (69-205)||(49927512-49927649)
chr1 (127-204)||(52802126-52802203)
chr1 (128-208)||(22345258-22345337)
chr1 (69-204)||(46141719-46141855)
chr1 (126-224)||(23359328-23359427)
chr1 (154-208)||(19054246-19054300)
chr1 (106-204)||(51289960-51290058)
chr1 (66-204)||(26633464-26633600)
chr1 (106-211)||(48751403-48751508)
chr1 (121-205)||(15047272-15047356)
chr1 (126-205)||(2425684-2425763)
chr1 (166-224)||(3944009-3944068)
chr1 (166-224)||(3993822-3993881)
chr1 (106-205)||(11183161-11183260)
chr1 (166-224)||(15051327-15051386)
chr1 (137-207)||(7981136-7981206)
chr1 (159-205)||(13636121-13636167)
chr1 (125-211)||(46043500-46043586)
chr1 (67-207)||(13173771-13173911)
chr1 (159-204)||(13633897-13633942)
chr1 (159-204)||(16270025-16270070)
chr1 (159-224)||(38689959-38690024)
chr1 (154-211)||(46217311-46217368)
chr1 (159-211)||(45943719-45943771)
[»] chr7 (18 HSPs)
chr7 (67-224)||(10705183-10705341)
chr7 (79-208)||(47060875-47061003)
chr7 (87-204)||(46863344-46863461)
chr7 (67-205)||(9494805-9494944)
chr7 (69-205)||(30355238-30355375)
chr7 (96-182)||(21185584-21185670)
chr7 (166-224)||(45767840-45767899)
chr7 (159-205)||(9367723-9367769)
chr7 (155-205)||(15070379-15070429)
chr7 (154-204)||(48590339-48590389)
chr7 (168-224)||(29592580-29592637)
chr7 (132-201)||(37345074-37345143)
chr7 (156-205)||(41047802-41047851)
chr7 (106-175)||(45361624-45361693)
chr7 (100-204)||(10225843-10225947)
chr7 (121-193)||(40140729-40140801)
chr7 (126-205)||(47776327-47776406)
chr7 (126-202)||(48314668-48314744)
[»] scaffold0201 (1 HSPs)
scaffold0201 (126-220)||(22398-22493)
[»] chr5 (23 HSPs)
chr5 (106-205)||(18307229-18307328)
chr5 (128-224)||(34122521-34122618)
chr5 (126-224)||(28388498-28388597)
chr5 (67-207)||(18538332-18538473)
chr5 (106-211)||(17966879-17966984)
chr5 (154-207)||(25497534-25497587)
chr5 (106-207)||(33993255-33993356)
chr5 (69-204)||(3603148-3603284)
chr5 (106-205)||(41798793-41798892)
chr5 (100-205)||(3600305-3600411)
chr5 (83-205)||(38968047-38968169)
chr5 (180-224)||(7017561-7017606)
chr5 (166-205)||(8577009-8577048)
chr5 (166-224)||(25890029-25890088)
chr5 (106-205)||(25897078-25897177)
chr5 (126-205)||(33995147-33995226)
chr5 (126-205)||(34123934-34124013)
chr5 (159-205)||(19037469-19037515)
chr5 (155-205)||(19041116-19041166)
chr5 (128-205)||(542789-542866)
chr5 (105-205)||(8702197-8702297)
chr5 (166-213)||(30708863-30708911)
chr5 (106-198)||(39743154-39743246)
[»] chr3 (40 HSPs)
chr3 (77-207)||(28611097-28611227)
chr3 (67-208)||(29918337-29918479)
chr3 (67-208)||(29967490-29967632)
chr3 (126-224)||(2743393-2743492)
chr3 (126-224)||(4002484-4002583)
chr3 (67-208)||(29929361-29929503)
chr3 (67-208)||(29978515-29978657)
chr3 (100-197)||(46344906-46345003)
chr3 (126-224)||(36812831-36812931)
chr3 (106-205)||(41802973-41803072)
chr3 (79-202)||(48888689-48888811)
chr3 (106-205)||(51402397-51402496)
chr3 (125-204)||(19440250-19440329)
chr3 (105-204)||(43571685-43571784)
chr3 (127-201)||(46989543-46989617)
chr3 (159-224)||(48246440-48246506)
chr3 (106-208)||(52567738-52567840)
chr3 (87-204)||(41579724-41579841)
chr3 (125-205)||(34691619-34691699)
chr3 (159-203)||(42760210-42760254)
chr3 (158-221)||(47070495-47070559)
chr3 (126-205)||(9429848-9429927)
chr3 (166-224)||(30943224-30943283)
chr3 (158-205)||(44227139-44227186)
chr3 (126-209)||(48250864-48250947)
chr3 (166-205)||(49144455-49144494)
chr3 (159-205)||(2647698-2647744)
chr3 (126-200)||(7247864-7247938)
chr3 (154-208)||(14043894-14043948)
chr3 (126-213)||(16851121-16851206)
chr3 (159-205)||(34049108-34049154)
chr3 (155-205)||(35743581-35743631)
chr3 (159-205)||(43476220-43476266)
chr3 (159-205)||(54389823-54389869)
chr3 (159-224)||(6489357-6489422)
chr3 (133-206)||(30256001-30256074)
chr3 (192-224)||(66935-66967)
chr3 (166-213)||(2647764-2647812)
chr3 (125-205)||(13747718-13747797)
chr3 (126-210)||(19341588-19341672)
[»] chr2 (33 HSPs)
chr2 (67-200)||(2917618-2917752)
chr2 (67-207)||(45475375-45475516)
chr2 (66-208)||(19187219-19187362)
chr2 (83-208)||(41008924-41009048)
chr2 (83-207)||(34921756-34921879)
chr2 (116-224)||(41004514-41004621)
chr2 (126-224)||(3795332-3795431)
chr2 (87-205)||(35490636-35490754)
chr2 (156-205)||(30493384-30493433)
chr2 (96-204)||(35493341-35493449)
chr2 (166-224)||(7267423-7267482)
chr2 (106-205)||(25184829-25184927)
chr2 (106-224)||(82242-82359)
chr2 (159-224)||(5351711-5351777)
chr2 (83-205)||(24512119-24512241)
chr2 (159-205)||(32956342-32956388)
chr2 (126-175)||(12905544-12905593)
chr2 (136-224)||(24754003-24754092)
chr2 (106-185)||(1101071-1101150)
chr2 (128-207)||(12908426-12908505)
chr2 (106-205)||(27276373-27276472)
chr2 (126-209)||(34639309-34639392)
chr2 (159-205)||(17424160-17424206)
chr2 (187-224)||(24601695-24601733)
chr2 (187-224)||(24612381-24612419)
chr2 (155-205)||(31974246-31974296)
chr2 (159-205)||(43982227-43982273)
chr2 (106-204)||(45137433-45137531)
chr2 (163-204)||(2648149-2648190)
chr2 (67-171)||(45479827-45479932)
chr2 (192-224)||(12905584-12905616)
chr2 (128-224)||(28342520-28342616)
chr2 (125-205)||(33222610-33222690)
[»] scaffold0494 (2 HSPs)
scaffold0494 (106-205)||(806-905)
scaffold0494 (164-205)||(890-931)
[»] chr8 (20 HSPs)
chr8 (70-208)||(41855306-41855445)
chr8 (69-205)||(18441440-18441577)
chr8 (81-207)||(18205736-18205862)
chr8 (106-205)||(1114718-1114817)
chr8 (113-204)||(42605234-42605325)
chr8 (133-205)||(26451482-26451554)
chr8 (126-202)||(38872932-38873008)
chr8 (127-221)||(35962303-35962398)
chr8 (128-205)||(42602457-42602534)
chr8 (99-207)||(22577633-22577741)
chr8 (166-224)||(8419439-8419498)
chr8 (166-224)||(32375686-32375745)
chr8 (159-221)||(34366939-34367002)
chr8 (159-205)||(22550864-22550910)
chr8 (154-204)||(32383205-32383255)
chr8 (154-204)||(32437160-32437210)
chr8 (126-211)||(21406262-21406347)
chr8 (126-211)||(21800754-21800839)
chr8 (131-204)||(38330516-38330589)
chr8 (166-207)||(41274627-41274668)
[»] chr6 (22 HSPs)
chr6 (126-224)||(23958885-23958984)
chr6 (166-224)||(13382664-13382723)
chr6 (126-205)||(13388707-13388786)
chr6 (126-205)||(13401481-13401560)
chr6 (166-224)||(18351622-18351681)
chr6 (126-205)||(31768748-31768827)
chr6 (109-207)||(16192747-16192845)
chr6 (158-221)||(11840232-11840296)
chr6 (170-209)||(26712179-26712218)
chr6 (166-205)||(27616750-27616789)
chr6 (106-224)||(2051004-2051121)
chr6 (159-205)||(6204855-6204901)
chr6 (159-205)||(11691822-11691868)
chr6 (106-208)||(18606020-18606121)
chr6 (159-205)||(22305136-22305182)
chr6 (155-205)||(26712072-26712122)
chr6 (159-205)||(29076322-29076368)
chr6 (159-205)||(29109855-29109901)
chr6 (159-205)||(29111295-29111341)
chr6 (159-205)||(31771740-31771786)
chr6 (86-175)||(23986010-23986099)
chr6 (125-202)||(32643523-32643600)
[»] chr4 (27 HSPs)
chr4 (126-224)||(15995717-15995816)
chr4 (126-224)||(19069182-19069281)
chr4 (106-205)||(9889969-9890068)
chr4 (67-185)||(21472503-21472622)
chr4 (100-204)||(955761-955865)
chr4 (67-205)||(44561329-44561468)
chr4 (67-204)||(29700302-29700440)
chr4 (108-205)||(41023363-41023460)
chr4 (126-205)||(15999798-15999877)
chr4 (133-204)||(34151616-34151687)
chr4 (159-205)||(55407792-55407838)
chr4 (128-205)||(1041932-1042009)
chr4 (131-211)||(17342142-17342222)
chr4 (100-208)||(21470872-21470980)
chr4 (166-213)||(40354640-40354688)
chr4 (166-205)||(21018069-21018108)
chr4 (166-224)||(49563875-49563934)
chr4 (159-221)||(51492099-51492162)
chr4 (159-205)||(6178109-6178155)
chr4 (154-204)||(11494566-11494616)
chr4 (159-205)||(21022887-21022933)
chr4 (159-205)||(26932612-26932658)
chr4 (159-205)||(49094112-49094158)
chr4 (116-205)||(4979916-4980005)
chr4 (192-224)||(3449718-3449750)
chr4 (155-211)||(9473654-9473710)
chr4 (166-202)||(26792246-26792282)
[»] scaffold0513 (1 HSPs)
scaffold0513 (125-224)||(8193-8293)
[»] scaffold0116 (1 HSPs)
scaffold0116 (126-224)||(15934-16033)
[»] scaffold0341 (1 HSPs)
scaffold0341 (106-205)||(17350-17449)
[»] scaffold0219 (1 HSPs)
scaffold0219 (131-224)||(20091-20185)
[»] scaffold0618 (1 HSPs)
scaffold0618 (126-197)||(3880-3951)
[»] scaffold0361 (1 HSPs)
scaffold0361 (106-205)||(4399-4498)
[»] scaffold0199 (1 HSPs)
scaffold0199 (159-205)||(12387-12433)
[»] scaffold0360 (1 HSPs)
scaffold0360 (106-207)||(7301-7402)
[»] scaffold0019 (1 HSPs)
scaffold0019 (156-205)||(127526-127575)
[»] scaffold0012 (1 HSPs)
scaffold0012 (158-211)||(232825-232878)
[»] scaffold1379 (1 HSPs)
scaffold1379 (77-205)||(433-561)
[»] scaffold0184 (1 HSPs)
scaffold0184 (177-209)||(18288-18320)
[»] scaffold0147 (1 HSPs)
scaffold0147 (192-224)||(499-531)
[»] scaffold0078 (1 HSPs)
scaffold0078 (177-209)||(54524-54556)
[»] scaffold0011 (1 HSPs)
scaffold0011 (165-205)||(236233-236273)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 29261290 - 29261507
Alignment:
Q  7 ccaactacatggtgtcagggcaagtaaagataaagatcagattcatcataatatagaacaaaaattgttgtt-acatatttcataagaccgagacacaga 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||  ||||||||| | ||  ||||||    
T  29261290 ccaactacatggtgtcagggcaagtaaagataaagattagattcatcataatatagaacgaaaattgttgttgacacgtttcataaggc-gatgcacaga 29261388  T
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| | ||||||||||||||||   ||| ||||||||||||||||| | |||||||| |||||||| ||| ||||||||||| ||||    
T  29261389 agtaaaatacgtttttgcctcctcggcagttaactgtagagaaattgtaaaatcggctgcaattaactgccgaagaaaacctcagtagttaactgtcgag 29261488  T
Q  206 aaaactgattatgcagaca 224  Q
    |||||| |||||| |||||    
T  29261489 aaaactaattatggagaca 29261507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 6557910 - 6558009
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag-aaaactgattatgcagaca 224  Q
    ||||||||||||||| ||||| ||||  ||| ||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||    
T  6557910 cctcggcagttaactgccgaggaatttgaaattcggctgcagttaactgccgaggaaaatctcggtagttaactgccgagaaaaactgattatgcagaca 6558009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 36072380 - 36072462
Alignment:
Q  142 ccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaactgattatgcagaca 224  Q
    ||||| ||||| ||||||||||| |||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||    
T  36072380 ccgagaaattgaaaaatcggctgcagttaactgccgaggaaaacctcggtagttaactgccgaaaaaactgattatgcagaca 36072462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 44470089 - 44469990
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||||||||||||| ||||| ||||  |||  |||||| |||||||||| || ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  44470089 cctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcgggagttaactgccgaggaaaactgattatgcagaca 44469990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 50113334 - 50113401
Alignment:
Q  158 tcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag-aaaactgattatgcagaca 224  Q
    |||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||||||    
T  50113334 tcggctgtagttaattgccgaggaaaatctcggtagttaactgccgagaaaaactgattatgcagaca 50113401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 8460174 - 8460093
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
    |||||| ||||||| |||||| |||| | |||||||||| ||||||||||  | |||||||||||||||||||||||||||||    
T  8460174 cctcggtagttaacaaccgaggaatt-tgaaatcggctgcagttaactgccaaggaaaatctcggtagttaactgccgagaaa 8460093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 46973139 - 46973279
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| ||||||| || | |||||||| |||||||||| | |||| |  ||| ||||||||||| ||||| ||||  |||| ||||||     
T  46973139 aaaattgttgttgacacatttcattaggctgagacacacaagtaaaatacgattttgcccccttggcagttaactgccgaggaattcaaaaaccggctgc 46973238  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    |||||||||| || ||||| |||  |||||||||||||||||    
T  46973239 agttaactgccgaggaaaacctc-atagttaactgccgagaa 46973279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 6562259 - 6562160
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | ||||||  ||||||||||||||| ||||| ||||  |||  |||||| |||||||||| || ||||  ||||||||||||||||||||    
T  6562259 agtaaaatacgattttaccccctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaaatcctcggtagttaactgccgag 6562160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 13178230 - 13178127
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| || ||||||||||||||| | ||| ||||  |||| | |||| |||||||||| || ||||| ||||  ||||||||||||||    
T  13178230 agtaaaatacgtttttgctccctcggcagttaactgctgagaaatttaaaaaccagctgcagttaactgctgaggaaaacctcgagagttaactgccgag 13178131  T
Q  206 aaaa 209  Q
    ||||    
T  13178130 aaaa 13178127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 41804171 - 41804037
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||| ||||| | ||| |||| |||||||||| | |||| |  | ||||||||||||| ||||| ||||  |||| || |||     
T  41804171 aaaattgttgttgacacattttataaggctgaggcacacaagtaaaatacgcttttgccccttcggcagttaactgccgaggaattcaaaaaccgactgc 41804072  T
Q  166 agttaactgcagaagaaaatctcggtagttaactg 200  Q
    |||||||||| || ||||| |||||||||||||||    
T  41804071 agttaactgccgaggaaaacctcggtagttaactg 41804037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 44336249 - 44336327
Alignment:
Q  131 gcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaa 209  Q
    ||||||||||  |||| ||||  ||| ||||||| |||||||||| || ||||| ||||||||||||||||||||||||    
T  44336249 gcagttaactgtcgaggaattagaaattcggctgcagttaactgccgaggaaaacctcggtagttaactgccgagaaaa 44336327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 46886432 - 46886367
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag-aaaactgattatgcagaca 224  Q
    ||||||||||||| ||| || ||||| |||||||||||||||||||| |||||||||||||||||||    
T  46886432 cggctgtagttaagtgccgaggaaaa-ctcggtagttaactgccgaggaaaactgattatgcagaca 46886367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 36076695 - 36076555
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    ||||||| |||| ||| |||||||||| | |||| ||| |||||||||| ||||| ||  | |||| ||||||| |||||| ||||  |||| ||||||     
T  36076695 aaaattgctgttgacacatttcataaggctgagaaacacaagtaaaatacgtttt-accccttcggtagttaaccaccgaggaattcaaaaaccggctgc 36076597  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    |||||||||| || ||||| |||| |||| ||||||||||||    
T  36076596 agttaactgccgaggaaaacctcgctagtaaactgccgagaa 36076555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 49927649 - 49927512
Alignment:
Q  69 aattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtag 167  Q
    |||||||||| ||| |||||||| | |||||| |||  ||||||||| ||||||    ||||||||||||||| ||||  ||||  |||| ||||| |||    
T  49927649 aattgttgttgacacatttcatatggccgagaaacacgagtaaaatacgtttttgtcccctcggcagttaactgccgaagaatttaaaaaccggctatag 49927550  T
Q  168 ttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||| ||  |||| ||||||||||||||| ||||    
T  49927549 ttaactgccgagaaaaacctcggtagttaactgtcgag 49927512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 52802126 - 52802203
Alignment:
Q  127 ctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||||||||||||| ||||| ||||  |||  |||||| |||||||||| || ||||| |||||||||||||||||||    
T  52802126 ctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcggtagttaactgccga 52802203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 22345258 - 22345337
Alignment:
Q  128 tcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
    ||||||||||||| ||||| |||| | ||| |||||| |||||||||| ||| |||  |||||||||||||||||||||||    
T  22345258 tcggcagttaactgccgaggaatt-tgaaaccggctgcagttaactgccgaaaaaatcctcggtagttaactgccgagaaa 22345337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 46141719 - 46141855
Alignment:
Q  69 aattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtag 167  Q
    |||||||||| ||||||| |||||| | |||  ||| |||||||||| | |||| |   |||||||||||||| ||||| ||||  | || |||||| ||    
T  46141719 aattgttgttgacatattgcataaggctgaggtacacaagtaaaatacgattttgccctctcggcagttaactgccgaggaattcaataaccggctgcag 46141818  T
Q  168 ttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||||||| || |||||  ||||||||||||||||||    
T  46141819 ttaactgccgaggaaaacatcggtagttaactgccga 46141855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 23359427 - 23359328
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||||||||||| | ||||| ||||  |||  |||||| |||||||| | || ||||| ||||||||| ||||||||| ||||||||||||| ||||||    
T  23359427 cctcggcagttaattgccgaggaatttgaaatccggctgcagttaactaccgaggaaaacctcggtagtaaactgccgaggaaaactgattatacagaca 23359328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 19054300 - 19054246
Alignment:
Q  154 aaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
    ||||||||||| ||||||||||  | ||||| |||||||||||||||||||||||    
T  19054300 aaaatcggctgcagttaactgccaaggaaaacctcggtagttaactgccgagaaa 19054246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 51290058 - 51289960
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    ||||||||| | ||||||  ||||||||||||||||| ||| ||||  |||  ||| || |||||||||| || ||||| ||||||||||| |||||||    
T  51290058 agtaaaataagattttaccccctcggcagttaactactgaggaattaaaaatccggttgcagttaactgccgaggaaaacctcggtagttagctgccga 51289960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 26633464 - 26633600
Alignment:
Q  66 aaaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctg 164  Q
    ||||||||||||| ||| ||||||||||   ||| |||| |||||||||| | |||| |  ||||||   |||||||||||  ||||  |||| ||| ||    
T  26633464 aaaaattgttgttgacacatttcataaggttgaggcacacaagtaaaatacgcttttgccccctcgg---ttaactaccgaagaattcaaaaaccggttg 26633560  T
Q  165 tagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
     |||||||||| || ||||| |||||||||||||||||||    
T  26633561 cagttaactgccgaggaaaacctcggtagttaactgccga 26633600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 48751508 - 48751403
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | ||||||  |||||||| | |||| ||||| ||||  |||  |||||| |||||| ||| || ||||| ||||||||||||||||||||    
T  48751508 agtaaaatacgattttaccccctcggcactgaactgccgaggaattaaaaatccggctgcagttaattgccgaggaaaacctcggtagttaactgccgag 48751409  T
Q  206 aaaact 211  Q
     |||||    
T  48751408 gaaact 48751403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 15047272 - 15047356
Alignment:
Q  121 tacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||| ||||||||||||||| ||||| ||||  |||  |||||| |||||||||| || |||   ||||||||||||||||||||    
T  15047272 tactccctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaattcctcggtagttaactgccgag 15047356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 2425763 - 2425684
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||||||| ||||    ||| |||  |||||| |||||||||| || || |||||||||||||||||||||||    
T  2425763 cctcggcagttaactgccgaagttttggaaatccggctgcagttaactgctgaggagaatctcggtagttaactgccgag 2425684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 3944009 - 3944068
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||||||| || ||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  3944009 agttaactgccgaggaaaacctcggtagttaactgccgaggaaatttgattatgcagaca 3944068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 3993881 - 3993822
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||||||| || ||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  3993881 agttaactgccgaggaaaacctcggtagttaactgccgaggaaatttgattatgcagaca 3993822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 11183161 - 11183260
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| || ||| | ||||||||| | ||| ||||  |||  |||||| |||||||||| || ||||| ||||||||||||||| ||||    
T  11183161 agtaaaatacgtttttgctcccttgacagttaactgctgaggaattaaaaatccggctgcagttaactgccgaggaaaacctcggtagttaactgtcgag 11183260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 15051386 - 15051327
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgcc-gagaaaactgattatgcagaca 224  Q
    |||||||||| || ||||| ||||||||||||||||| | |||| |||||||||||||||    
T  15051386 agttaactgccgaggaaaacctcggtagttaactgccggcgaaatctgattatgcagaca 15051327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 7981206 - 7981136
Alignment:
Q  137 aactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    |||| ||||| ||||  ||||||||||| | |||||||| || ||||| ||||||||||||| ||||||||    
T  7981206 aactgccgagaaattaaaaaatcggctgcaattaactgccgaggaaaacctcggtagttaaccgccgagaa 7981136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 13636167 - 13636121
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  13636167 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 13636121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 46043500 - 46043586
Alignment:
Q  125 tcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaact 211  Q
    ||||| |||||||||||||||| ||||   |||| ||||| | |||||| | || |||||  ||||||||||||||||||| |||||    
T  46043500 tcctctgcagttaactaccgaggaattcataaattggctgcaattaactaccgaggaaaacttcggtagttaactgccgaggaaact 46043586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 13173771 - 13173911
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||||||||| | ||| |||| ||||||||||   |||| |  ||||||||||||||| | | | ||||  |||| ||||||     
T  13173771 aaaattgttgttgacacatttcataaggctgaggcacacaagtaaaatactattttgccccctcggcagttaactgctggg-aattcaaaaaccggctgc 13173869  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    ||||||| || || ||||| || || ||||||||||||||||    
T  13173870 agttaacagccgaggaaaaccttggcagttaactgccgagaa 13173911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 13633897 - 13633942
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||| |||||||||||| || ||||| |||||||||||||||||||    
T  13633897 cggcggtagttaactgccgaggaaaacctcggtagttaactgccga 13633942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 16270070 - 16270025
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||||| |||||||||| |||||||| ||||| |||||||||||||    
T  16270070 cggctgcagttaactgccgaagaaaacctcggcagttaactgccga 16270025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 38689959 - 38690024
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaactgattatgcagaca 224  Q
    |||||| ||||||||||  | ||||| |||||||||||||||||||| |||   ||||||||||||    
T  38689959 cggctgcagttaactgccaaggaaaacctcggtagttaactgccgaggaaaacaattatgcagaca 38690024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 46217368 - 46217311
Alignment:
Q  154 aaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaact 211  Q
    ||||||||||| |||||||| | || |||||  ||||||||||||||||||| |||||    
T  46217368 aaaatcggctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaact 46217311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 45943771 - 45943719
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaact 211  Q
    ||||||||||||||| | || |||||  ||||||||||||||||||| |||||    
T  45943771 cggctgtagttaactaccgaggaaaacttcggtagttaactgccgaggaaact 45943719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 10705183 - 10705341
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    ||||||||| || |||||||||||||| |  || |||| ||||||||||  ||||| |  ||| ||||||||||| ||||| ||||  |||||||||||     
T  10705183 aaaattgttattgacatatttcataaggctaaggcacacaagtaaaatacatttttccccccttggcagttaactgccgagaaattaaaaaatcggctgc 10705282  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaaaactgattatgcagaca 224  Q
    |||||||||| ||  |||| || || |||||||||||||||||||||||||||||||||    
T  10705283 agttaactgccgagaaaaaccttgggagttaactgccgagaaaactgattatgcagaca 10705341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 47060875 - 47061003
Alignment:
Q  79 acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcaga 178  Q
    |||||||||||||| | ||| || | |||||||||| |||||| |  |||||||||||||||  |||| ||||  |||||||||||||||||||||| ||    
T  47060875 acatatttcataaggctgaggcatacaagtaaaatacgtttttgccccctcggcagttaactgtcgaggaattc-aaaatcggctgtagttaactgccga 47060973  T
Q  179 agaaaatctcggtagttaactgccgagaaa 208  Q
     ||||| |||||||||||||||||||||||    
T  47060974 ggaaaacctcggtagttaactgccgagaaa 47061003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 46863461 - 46863344
Alignment:
Q  87 cataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatc 186  Q
    |||||| | |||||||| |||||||||| |||||| |  | ||||||||||||| ||||| ||||| |||| |||||| ||||||||||  | |||||||    
T  46863461 cataaggctgagacacacaagtaaaatacgtttttgccccatcggcagttaactgccgagaaattgaaaaaccggctgcagttaactgcgaacgaaaatc 46863362  T
Q  187 tcggtagttaactgccga 204  Q
    || |||||||||||||||    
T  46863361 tctgtagttaactgccga 46863344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 9494944 - 9494805
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||||||||| | ||| |||| |||||||||| || | | |  ||||||||||||||| ||||| ||||  |||| ||||||     
T  9494944 aaaattgttgttgacacatttcataaggctgaggcacacaagtaaaataggtatatgccccctcggcagttaactgccgaggaattaaaaaaccggctgc 9494845  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||| || ||||| ||||| ||||||||| ||||    
T  9494844 agttaactgccgaggaaaacctcgggagttaactgtcgag 9494805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 30355375 - 30355238
Alignment:
Q  69 aattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtag 167  Q
    |||||||||| ||| |||||||| ||| |||| |||  ||||||||| | |||| |  ||||||||||||| | | ||  ||||  ||||||||||| ||    
T  30355375 aattgttgttgacacatttcatatgactgagaaacacgagtaaaatacgcttttgccccctcggcagttaattgctgaagaattcaaaaatcggctgcag 30355276  T
Q  168 ttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||| || ||||| ||||||||||||||||||||    
T  30355275 ttaactgccgaggaaaacctcggtagttaactgccgag 30355238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 21185584 - 21185670
Alignment:
Q  96 gagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaa 182  Q
    |||||||| |||||||||| | |||| | |||||||||||||||| ||||  ||||  | || ||||||||||||||||| ||||||    
T  21185584 gagacacataagtaaaatacgattttgcctcctcggcagttaactgccgaagaattcaataaccggctgtagttaactgccgaagaa 21185670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 45767899 - 45767840
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||||||| || ||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  45767899 agttaactgccgaggaaaacctcggtagttaactgccgaggaaatttgattatgcagaca 45767840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 9367769 - 9367723
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  9367769 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 9367723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 15070379 - 15070429
Alignment:
Q  155 aaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||| | |||||||||| || ||||| ||||||||||||||||||||    
T  15070379 aaatcggcggcagttaactgccgaggaaaacctcggtagttaactgccgag 15070429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 48590389 - 48590339
Alignment:
Q  154 aaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    ||||||||||| |||||||| | || ||||||||||| |||||||||||||    
T  48590389 aaaatcggctgcagttaactaccgaggaaaatctcggcagttaactgccga 48590339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 29592580 - 29592637
Alignment:
Q  168 ttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||||| || |||||  |||||||||||||| ||| ||||||||||||||||||||    
T  29592580 ttaactgccgatgaaaacttcggtagttaactgtcgaagaaaactgattatgcagaca 29592637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 37345074 - 37345143
Alignment:
Q  132 cagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgc 201  Q
    ||||||||||||||| ||   | |||||||| | |||||||||| || ||||||||||| ||||||||||    
T  37345074 cagttaactaccgaggaaaaatgaaatcggcggcagttaactgccgaggaaaatctcgggagttaactgc 37345143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 41047802 - 41047851
Alignment:
Q  156 aatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| ||||||||||||| || |||||  |||||||||||||||||||    
T  41047802 aatcgggtgtagttaactgccgaggaaaacttcggtagttaactgccgag 41047851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 45361624 - 45361693
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgc 175  Q
    |||||||||||||||| || |||||||||||||||  |||| ||||  |||  |||||| ||||||||||    
T  45361624 agtaaaatatgtttttgctccctcggcagttaactgacgaggaattaaaaatccggctgcagttaactgc 45361693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 10225947 - 10225843
Alignment:
Q  100 cacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaact 199  Q
    |||| ||||||||||||||||| | |||||| |||||||||  |||  |||   ||||| | ||| |||||||| | || ||||||||||| ||||||||    
T  10225947 cacataagtaaaatatgtttttgcctcctcgacagttaactgtcgatgaatgcaaaaattgactgaagttaactaccgaggaaaatctcggcagttaact 10225848  T
Q  200 gccga 204  Q
     ||||    
T  10225847 accga 10225843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 40140729 - 40140801
Alignment:
Q  121 tacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtag 193  Q
    ||||||||| |||||||||| ||||| ||   |||||||||||  |||||||||| || ||||| ||||||||    
T  40140729 tacttcctctgcagttaactgccgaggaaaaataaaatcggctccagttaactgccgaggaaaacctcggtag 40140801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 47776327 - 47776406
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatc-ggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||| ||||||||| ||||| ||||  |||||| ||||| |||||||||| || ||||| ||||||| ||||||||||||    
T  47776327 cctcgacagttaactgccgagaaatta-aaaatctggctgcagttaactgccgaggaaaacctcggtaattaactgccgag 47776406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 48314668 - 48314744
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgcc 202  Q
    ||||||||||||||| ||||| ||||  | || |||||| |||||||| | || ||||| ||||||| |||||||||    
T  48314668 cctcggcagttaactgccgaggaattcaataaccggctgcagttaactaccgacgaaaacctcggtacttaactgcc 48314744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 22398 - 22493
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgca 220  Q
    ||||||||||||||| ||||| ||||  ||| ||||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  22398 cctcggcagttaactgccgaggaatttgaaattcggctgcagttaactgctgaggaaaatctcggtagttaactgccgaggaaaactgattatgca 22493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 18307229 - 18307328
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| || | |||||||||||||  |||| ||||  |||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  18307229 agtaaaatacgtttttgctccttcggcagttaactgtcgaggaattaaaaaatcggctgtagttaactgccgaggaaaacctcggtagttaactgccgag 18307328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 34122521 - 34122618
Alignment:
Q  128 tcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||||||||||| ||||| ||||  |||  |||||| |||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  34122521 tcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaaaagctcggtagttaactgccgaggaaaactgattatgcagaca 34122618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 28388597 - 28388498
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccg-agaaaactgattatgcagaca 224  Q
    |||||||||||| || ||||| ||||  |||  | |||| |||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||    
T  28388597 cctcggcagttagctgccgaggaatttgaaatccagctgcagttaactgccgaggaaaacctcggtagttaactgccgaagaaaactgattatgcagaca 28388498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 18538473 - 18538332
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| ||||||| || | ||| |||| |||||||||| | |||| |  ||||||||||||| |  |||| ||||  |||| ||||||     
T  18538473 aaaattgttgttgacacatttcattaggctgaggcacacaagtaaaatacgattttgccccctcggcagttaattgtcgaggaattcaaaaaccggctgc 18538374  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    |||||||||| || |||||  |||||||||||||||||||||    
T  18538373 agttaactgccgaggaaaacttcggtagttaactgccgagaa 18538332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 17966984 - 17966879
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | ||||||  ||||||||||||||| ||||| ||||  |||  || ||| |||||||| | || |||||||||||||||||||||| |||    
T  17966984 agtaaaatacgattttaccccctcggcagttaactgccgagaaattaaaaatccgactgcagttaactaccgaggaaaatctcggtagttaactgctgag 17966885  T
Q  206 aaaact 211  Q
     |||||    
T  17966884 gaaact 17966879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 25497534 - 25497587
Alignment:
Q  154 aaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||    
T  25497534 aaaattggctgcagttaactgccgaggaaaatctcggtagttaactgccgagaa 25497587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 33993255 - 33993356
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| |  |||||| |||||||| ||||  ||||  |||| ||||||||||||||||| |   |||| ||||||||||||||||||||    
T  33993255 agtaaaatacgtttttgccccctcggaagttaactgccgaaaaattcaaaaaccggctgtagttaactgccgtgaaaaacctcggtagttaactgccgag 33993354  T
Q  206 aa 207  Q
    ||    
T  33993355 aa 33993356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 3603284 - 3603148
Alignment:
Q  69 aattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtag 167  Q
    |||||||||| ||| ||| |||||| | ||| |||| |||||||||| |||||| || ||||| ||||||||| ||||  ||||  | ||  ||||| ||    
T  3603284 aattgttgttgacacattgcataaggctgaggcacataagtaaaatacgtttttgctccctcgacagttaactgccgaagaattcaataactggctgcag 3603185  T
Q  168 ttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||||| | || ||||| |||||||||||||||||||    
T  3603184 ttaacttccgaggaaaacctcggtagttaactgccga 3603148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 41798793 - 41798892
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||| |||| |  ||||||||||||||| | ||  ||||  |||  |||||| |||||||||| |||||||| ||||||||||| ||||||||    
T  41798793 agtaaaatatgattttgccccctcggcagttaactgctgaagaatttgaaatccggctgcagttaactgccgaagaaaacctcggtagttatctgccgag 41798892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 3600305 - 3600411
Alignment:
Q  100 cacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaa-aatcggctgtagttaactgcagaagaaaatctcggtagttaac 198  Q
    |||| ||||||||||||||||| |  ||||||||||||||| |||| ||||| ||| || | |||| ||||||||||  | ||||| |||| ||||||||    
T  3600305 cacacaagtaaaatatgtttttgccccctcggcagttaactgccgaataattataataaccagctgcagttaactgccaaggaaaacctcgatagttaac 3600404  T
Q  199 tgccgag 205  Q
     ||||||    
T  3600405 agccgag 3600411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 38968047 - 38968169
Alignment:
Q  83 atttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaa 182  Q
    |||||||||| | || | ||| |||||||||| ||||||  | | |||| |||||||||||||| |||   |||  |||||| |||||||||| || |||    
T  38968047 atttcataaggctgaaaaacataagtaaaatacgtttttgatccttcggtagttaactaccgaggaataaaaaatccggctgcagttaactgccgaggaa 38968146  T
Q  183 aatctcggtagttaactgccgag 205  Q
    || |||| |||||||||||||||    
T  38968147 aacctcgatagttaactgccgag 38968169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 7017561 - 7017606
Alignment:
Q  180 gaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  7017561 gaaaacctcggtagttaactgccgaggaaaactgattatgcagaca 7017606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 8577009 - 8577048
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  8577009 agttaactgccgaagaaaacctcggtagttaactgccgag 8577048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 25890029 - 25890088
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgag-aaaactgattatgcagaca 224  Q
    |||||||| | || ||||| ||||||||| |||||||||| |||||||||||||||||||    
T  25890029 agttaactaccgaggaaaacctcggtagtaaactgccgaggaaaactgattatgcagaca 25890088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 25897177 - 25897078
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||  ||||||  | ||||||||||||||||||| ||||  ||   |||||| ||||||||||  | ||||  ||||||||||||||||||||    
T  25897177 agtaaaatattattttaccccttcggcagttaactaccgaggaatttgaactccggctgcagttaactgcccaggaaatcctcggtagttaactgccgag 25897078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 33995226 - 33995147
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||| ||||||||| ||||| ||||  |||||||| || | |||||||| || ||||| ||||| ||||||||||||||    
T  33995226 cctcgacagttaactgccgagaaattcaaaaatcggatgcaattaactgccgaggaaaacctcgggagttaactgccgag 33995147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 34124013 - 34123934
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||||||||  |||| ||||  |||  |||||| ||||||||||  | ||||| ||||||||||||||||||||    
T  34124013 cctcggcagttaactgtcgagaaatttgaaatccggctgcagttaactgccaaggaaaacctcggtagttaactgccgag 34123934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 19037515 - 19037469
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  19037515 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 19037469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 19041166 - 19041116
Alignment:
Q  155 aaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||| | ||||| |||| |||||||| ||||||||||||||||||||    
T  19041166 aaatcggcggcagttagctgccgaagaaaacctcggtagttaactgccgag 19041116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 542866 - 542789
Alignment:
Q  128 tcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||||||  |||| ||||  |||  |||||| || ||||||| || |||| |||||||||||||||||||||    
T  542866 tcggcagttaactgtcgaggaattagaaatccggctgcagctaactgccgaggaaactctcggtagttaactgccgag 542789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 8702297 - 8702197
Alignment:
Q  105 aagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcgg-ctgtagttaactgcagaagaaaatctcggtagttaactgccg 203  Q
    |||||||||| | |||| || ||||| ||||||||| ||||| ||||  |||||| | ||| |||||||||| || ||||| ||||||||||||||| ||    
T  8702297 aagtaaaatacgattttgctccctcgacagttaactgccgaggaatta-aaaatctgactgcagttaactgctgaggaaaacctcggtagttaactgacg 8702199  T
Q  204 ag 205  Q
    ||    
T  8702198 ag 8702197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 30708911 - 30708863
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactga 213  Q
    |||||||||| |||||||| |||| |||||||||||||| |||||||||    
T  30708911 agttaactgccgaagaaaacctcgatagttaactgccgaggaaaactga 30708863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 39743246 - 39743154
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaac 198  Q
    ||||||||||| |||| |  ||||| ||||||||| ||||| ||||  ||| ||| ||| |||||||||| || ||||| ||||| |||||||    
T  39743246 agtaaaatatgattttgccccctcgacagttaactgccgaggaatttgaaattcgactgcagttaactgccgaggaaaacctcggcagttaac 39743154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 28611227 - 28611097
Alignment:
Q  77 ttacatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgca 176  Q
    ||||| |||||||||| | |||||||| |||||||||||  |||| |  ||||||||||||||| ||||| ||||  |||| |||||| ||||||||||     
T  28611227 ttacacatttcataaggctgagacacacaagtaaaatataattttgccccctcggcagttaactgccgagaaattcaaaaaccggctgcagttaactgcc 28611128  T
Q  177 gaagaaaatctcggtagttaactgccgagaa 207  Q
    || |||||   ||||||||||||||||||||    
T  28611127 gaggaaaacaacggtagttaactgccgagaa 28611097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 29918479 - 29918337
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| |||||||||||||| | ||| |||| |||||||||| | ||||    |||||||| |||||| |||| |||||  |||| ||||||     
T  29918479 aaaattgttgttgacatatttcataaggctgaggcacataagtaaaatacgattttggcccctcggcaattaactgccgaataattcgaaaaccggctgc 29918380  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
    |||||||||| || ||||| |||| ||||||||||||||||||    
T  29918379 agttaactgccgaggaaaacctcgttagttaactgccgagaaa 29918337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 29967632 - 29967490
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| |||||||||||||| | ||| |||| |||||||||| | ||||    |||||||| |||||| |||| |||||  |||| ||||||     
T  29967632 aaaattgttgttgacatatttcataaggctgaggcacataagtaaaatacgattttggcccctcggcaattaactgccgaataattcgaaaaccggctgc 29967533  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
    |||||||||| || ||||| |||| ||||||||||||||||||    
T  29967532 agttaactgccgaggaaaacctcgttagttaactgccgagaaa 29967490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 2743393 - 2743492
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||||||||||||| ||||| ||||  |||  |||||| |||||||||| || ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  2743393 cctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcgggagttaactgccgaggaaaactgattatgcagaca 2743492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 4002583 - 4002484
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||||||||||||||| ||| ||||  |||  |||||| |||||||||| || ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  4002583 cctcggcagttaactactgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcgggagttaactgccgaggaaaactgattatgcagaca 4002484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 29929361 - 29929503
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||| ||||| | ||| |||| |||||||||||| |||| || ||||| |||||||||   ||| ||||  |||| ||||||     
T  29929361 aaaattgttgttgacacattttataaggctgaggcacacaagtaaaatatgattttgctccctcgacagttaactgttgaggaattcaaaaaccggctgc 29929460  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
    | |||||||| || ||||| |||| ||||||||||||||||||    
T  29929461 aattaactgccgaggaaaacctcgatagttaactgccgagaaa 29929503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 29978515 - 29978657
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||| ||||| | ||| |||| |||||||||||| |||| || ||||| |||||||||   ||| ||||  |||| ||||||     
T  29978515 aaaattgttgttgacacattttataaggctgaggcacacaagtaaaatatgattttgctccctcgacagttaactgttgaggaattcaaaaaccggctgc 29978614  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
    | |||||||| || ||||| |||| ||||||||||||||||||    
T  29978615 aattaactgccgaggaaaacctcgatagttaactgccgagaaa 29978657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 46344906 - 46345003
Alignment:
Q  100 cacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaa 197  Q
    |||| ||||||||||| ||||| |  |||||||||||||||  |||| ||||  ||||||||||| |||||||||| || ||||| ||||||||||||    
T  46344906 cacacaagtaaaatatttttttgccccctcggcagttaactgtcgaggaattcaaaaatcggctgcagttaactgccgaggaaaacctcggtagttaa 46345003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 36812831 - 36812931
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaat-cggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagac 223  Q
    |||||||||||| |||||||| ||||  ||||| |||||| |||||||| | || ||||| ||||||||| ||||||||| ||||||||||| |||||||    
T  36812831 cctcggcagttagctaccgaggaatttgaaaatccggctgcagttaactaccgaggaaaacctcggtagtaaactgccgaggaaaactgattgtgcagac 36812930  T
Q  224 a 224  Q
    |    
T  36812931 a 36812931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 41802973 - 41803072
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| |   |||||||||||||| ||||  ||||  |||| |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  41802973 agtaaaatacgtttttgcccactcggcagttaactgccgaagaatttaaaaaccggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 41803072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 48888689 - 48888811
Alignment:
Q  79 acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcaga 178  Q
    |||||||||||||||| ||| |||| |||||||||| ||   | |  |||||||||||| || ||||| ||||  |||  |||||| |||||||||| ||    
T  48888689 acatatttcataagactgaggcacacaagtaaaatacgtaaatgccccctcggcagtta-ctgccgaggaattaaaaatccggctgcagttaactgccga 48888787  T
Q  179 agaaaatctcggtagttaactgcc 202  Q
     |||||||||||||||||||||||    
T  48888788 ggaaaatctcggtagttaactgcc 48888811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 51402496 - 51402397
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| ||||||| |||||||| | | || |||||  |||||||  ||||||||||||  || ||||| ||||||||||||||||||||    
T  51402496 agtaaaatacgtttttgcttcctcagcagttaattgcagaataattcaaaaatcgattgtagttaactgtcgaggaaaacctcggtagttaactgccgag 51402397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 19440250 - 19440329
Alignment:
Q  125 tcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||||||||||||||| ||||  ||||   ||| |||||| |||||||||| || ||||| |||||||||||||||||||    
T  19440250 tcctcggcagttaactgccgaagaattcataaaccggctgcagttaactgccgaggaaaacctcggtagttaactgccga 19440329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 43571784 - 43571685
Alignment:
Q  105 aagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    ||||||||||||||||| |  ||||||||||||||| | ||| ||||  ||| ||||||| ||||||||||  | |||||||| | |||| |||||||||    
T  43571784 aagtaaaatatgtttttgccccctcggcagttaactgctgaggaattcaaaagtcggctgcagttaactgccaatgaaaatcttgatagtaaactgccga 43571685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 46989543 - 46989617
Alignment:
Q  127 ctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgc 201  Q
    |||||||||||||||||||| ||||  ||   |||||| |||||||||| || ||||| ||||||||||||||||    
T  46989543 ctcggcagttaactaccgagaaatttgaattccggctgcagttaactgccgaggaaaacctcggtagttaactgc 46989617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 48246440 - 48246506
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||| |||||||||  || ||||| ||||||||||||||||||| |||||||| |||||||||||    
T  48246440 cggctgcagttaactgtcgaggaaaacctcggtagttaactgccgaggaaaactgtttatgcagaca 48246506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 52567738 - 52567840
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | |||| | | |||||||||||||| |||| |||||  ||||||||||| | |||||||| ||  ||||  | |||||||||||||||||    
T  52567738 agtaaaatacgattttgccttctcggcagttaactgccgaataattcaaaaatcggctgcacttaactgccgagaaaaacttaggtagttaactgccgag 52567837  T
Q  206 aaa 208  Q
    |||    
T  52567838 aaa 52567840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 41579841 - 41579724
Alignment:
Q  87 cataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatc 186  Q
    |||||| | ||| |||| |||||||||| | |||| |  ||||||||||||| | | ||| ||||  | || |||||| |||||||||| || ||||| |    
T  41579841 cataaggctgaggcacataagtaaaatacgatttttccccctcggcagttaattgctgaggaattcaataaccggctgcagttaactgccgaggaaaacc 41579742  T
Q  187 tcggtagttaactgccga 204  Q
    ||||||||||||||||||    
T  41579741 tcggtagttaactgccga 41579724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 34691619 - 34691699
Alignment:
Q  125 tcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||||||||| ||||| || |  |||  |||||| |||||||||  || ||||| ||||||||||||||||||||    
T  34691619 tcctcggcagttaactgccgaggaaataaaaatccggctgcagttaactgtcgaggaaaacctcggtagttaactgccgag 34691699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 42760254 - 42760210
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccg 203  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||    
T  42760254 cggctgtagttaactgccgaggaaaacctcggtagttaactgccg 42760210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 47070495 - 47070559
Alignment:
Q  158 tcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaa-ctgattatgcag 221  Q
    |||||||||||||||| | || |||||  || |||||||||||||||||||| ||||||||||||    
T  47070495 tcggctgtagttaacttccgaggaaaacatccgtagttaactgccgagaaaatctgattatgcag 47070559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 9429927 - 9429848
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||||||| ||||| ||||  ||| | ||||| |||||| | | || ||||| ||||||||||||||||||||    
T  9429927 cctcggcagttaactgccgaggaatttgaaatttggctgcagttaagtaccgaggaaaacctcggtagttaactgccgag 9429848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 30943224 - 30943283
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||||||| || ||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  30943224 agttaactgccgaggaaaacctcggtagttaactgccgaggaaatttgattatgcagaca 30943283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 44227139 - 44227186
Alignment:
Q  158 tcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||| |||||||||| || ||||| ||||||||||||||||||||    
T  44227139 tcggctggagttaactgccgaggaaaacctcggtagttaactgccgag 44227186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 48250947 - 48250864
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaa 209  Q
    ||||||||||||||| | ||| ||||  ||   |||||| |||||||||| || ||||| ||||| ||||||||||||||||||    
T  48250947 cctcggcagttaactgctgaggaatttgaattccggctgcagttaactgccgaggaaaacctcgggagttaactgccgagaaaa 48250864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 49144494 - 49144455
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  49144494 agttaactgccgaagaaaacctcggtagttaactgccgag 49144455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 2647744 - 2647698
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  2647744 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 2647698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 7247938 - 7247864
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactg 200  Q
    ||||||||||||||| ||||| ||||  | || |||||| |||||||||  || ||||| |||||||||||||||    
T  7247938 cctcggcagttaactgccgaggaattcaataaccggctgcagttaactgacgaggaaaacctcggtagttaactg 7247864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 14043948 - 14043894
Alignment:
Q  154 aaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
    ||||||||||| |||||||||| || |||||  |||| |||||||||||||||||    
T  14043948 aaaatcggctgcagttaactgccgaggaaaacttcggcagttaactgccgagaaa 14043894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 16851121 - 16851206
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactga 213  Q
    ||||||||||||||| ||||   ||| | ||||||||||||||||||||| || |||||  |||||||| |||| |||| |||||||||    
T  16851121 cctcggcagttaactgccga---attatgaaatcggctgtagttaactgccgaggaaaacttcggtagtaaactaccgaggaaaactga 16851206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 34049108 - 34049154
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  34049108 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 34049154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 35743631 - 35743581
Alignment:
Q  155 aaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||| | |||||||||| || ||||| ||||||||||||||||||||    
T  35743631 aaatcggcggcagttaactgccgaggaaaacctcggtagttaactgccgag 35743581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 43476220 - 43476266
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  43476220 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 43476266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 54389823 - 54389869
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  54389823 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 54389869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 6489357 - 6489422
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaactgattatgcagaca 224  Q
    |||||| |||||||||| || ||||  |||||||||||||||||||| |||   ||||||||||||    
T  6489357 cggctgcagttaactgccgaggaaatcctcggtagttaactgccgaggaaaacaattatgcagaca 6489422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 30256074 - 30256001
Alignment:
Q  133 agttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgaga 206  Q
    |||||||| ||||| ||||  |||| |||||| |||||||||| || ||||| |||| ||||||||||| ||||    
T  30256074 agttaactgccgaggaattaaaaaaccggctgcagttaactgccgaggaaaacctcgatagttaactgctgaga 30256001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 66935 - 66967
Alignment:
Q  192 agttaactgccgagaaaactgattatgcagaca 224  Q
    |||||||| ||||||||||||||||||||||||    
T  66935 agttaactaccgagaaaactgattatgcagaca 66967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 2647764 - 2647812
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactga 213  Q
    |||||||||| |||||||| |||||| |||||||||||| |||||||||    
T  2647764 agttaactgccgaagaaaacctcggtggttaactgccgaggaaaactga 2647812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 13747797 - 13747718
Alignment:
Q  125 tcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||||||||| ||||  ||||  |||  |||||| |||||||||| || ||||| ||| ||||||||||||||||    
T  13747797 tcctcggcagttaactgccgatgaatttgaaatccggctgcagttaactgctgaggaaaacctc-gtagttaactgccgag 13747718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 19341672 - 19341588
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaac 210  Q
    ||||||||||||||| ||||| ||||  |||  |||||| |||||||| | || |||||  |||| |||||||||||||| ||||    
T  19341672 cctcggcagttaactgccgaggaattagaaatccggctgcagttaactaccgaggaaaacttcggcagttaactgccgaggaaac 19341588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 2917618 - 2917752
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||||||||| | ||| |||| |||||||||| |||||| |  ||||||||||||||| ||||| ||||| |||| |||||      
T  2917618 aaaattgttgttgacacatttcataaggctgaggcacaaaagtaaaatacgtttttgccccctcggcagttaactgccgagaaattgaaaaaccggctac 2917717  T
Q  166 agttaactgcagaagaaaatctcggtagttaactg 200  Q
    |||||||||| || ||||| ||| |||||||||||    
T  2917718 agttaactgccgaggaaaacctcagtagttaactg 2917752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 45475375 - 45475516
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    ||||||| |||| ||| |||||||||| | |||||||| |||||||||| | |||| |  ||||||||||||||| ||||| ||||  |||| |||||      
T  45475375 aaaattgatgttgacacatttcataaggctgagacacacaagtaaaatacgattttgccccctcggcagttaactgccgagaaattcaaaaaccggctac 45475474  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    |||||||||| || ||||| |||||||||||||| |||||||    
T  45475475 agttaactgccgaggaaaacctcggtagttaacttccgagaa 45475516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 19187362 - 19187219
Alignment:
Q  66 aaaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctg 164  Q
    ||||||||||||| | | || ||||||| | |||||||| |||||||||| |||||| |  ||||||||||||||| ||||| ||||  |||  | | ||    
T  19187362 aaaaattgttgttcagacatatcataaggctgagacacacaagtaaaatacgtttttgccccctcggcagttaactgccgagaaattcaaaatccagttg 19187263  T
Q  165 tagttaactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
     ||||| |||| || ||||| |||||||||||||||||||||||    
T  19187262 cagttacctgccgaggaaaacctcggtagttaactgccgagaaa 19187219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 41009048 - 41008924
Alignment:
Q  83 atttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaa 182  Q
    |||| ||||||||||||||||  |||||  || |||||| | |||||||||||||||| ||||| |||| |  || |||||| | |||||||| || |||    
T  41009048 atttgataagaccgagacacacgagtaatttacgtttttgcctcctcggcagttaactgccgaggaatt-tgtaaccggctgcatttaactgccgaggaa 41008950  T
Q  183 aatctcggtagttaactgccgagaaa 208  Q
    ||  ||||||||||||||||||||||    
T  41008949 aacttcggtagttaactgccgagaaa 41008924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 34921879 - 34921756
Alignment:
Q  83 atttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaa 182  Q
    |||||||||| | |||| |||  ||||||||| |||||| |  || ||| |||||||| ||||| ||||  |||| |||||| |||||||||| || |||    
T  34921879 atttcataaggcagagaaacacgagtaaaatacgtttttgccccc-cggtagttaactgccgagaaattcaaaaaccggctgcagttaactgctgaggaa 34921781  T
Q  183 aatctcggtagttaactgccgagaa 207  Q
    || ||||||||||||||||||||||    
T  34921780 aacctcggtagttaactgccgagaa 34921756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 41004514 - 41004621
Alignment:
Q  116 gtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaactgatt 215  Q
    |||||| |||||||||||||||||| ||||| |||| |  || |||||| |||||||||| ||| ||||  ||||||||||||||||||| |||   |||    
T  41004514 gtttttgcttcctcggcagttaactgccgaggaatt-tgtaaccggctgcagttaactgccgaaaaaaacttcggtagttaactgccgaggaaaaatatt 41004612  T
Q  216 atgcagaca 224  Q
    |||||||||    
T  41004613 atgcagaca 41004621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 3795332 - 3795431
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||||||||||||  |||| ||||  |||  |||||| |||||||||| || ||||| || || ||||||||||||| ||||||||||||||||||||    
T  3795332 cctcggcagttaactgtcgaggaatttgaaatccggctgcagttaactgccgaggaaaaccttggaagttaactgccgaggaaaactgattatgcagaca 3795431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 35490636 - 35490754
Alignment:
Q  87 cataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatc 186  Q
    |||||| | ||||||||  |||||||||  ||||| | |||||| | ||||||| ||||  ||||  |||| |||||| |||||||||| |||||||| |    
T  35490636 cataaggctgagacacacgagtaaaatacatttttgcctcctcgacggttaactgccgaagaattcaaaaaccggctgcagttaactgctgaagaaaacc 35490735  T
Q  187 tcggtagttaactgccgag 205  Q
    | |||||||||||||||||    
T  35490736 ttggtagttaactgccgag 35490754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 30493384 - 30493433
Alignment:
Q  156 aatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||||    
T  30493384 aatcggcggtagttaactgccgaggaaaatctcggtagttaactgccgag 30493433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 35493449 - 35493341
Alignment:
Q  96 gagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagtt 195  Q
    ||||||||  ||||||||| | |||| |  |||||| |||||||| ||||| ||||  |||| | |||| |||||||||| || |||||| |||||||||    
T  35493449 gagacacacgagtaaaatacgcttttgccccctcggtagttaactgccgaggaattcaaaaaccagctgcagttaactgccgaggaaaatatcggtagtt 35493350  T
Q  196 aactgccga 204  Q
    |||||||||    
T  35493349 aactgccga 35493341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 7267482 - 7267423
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||||||||  | ||||||||||||||||||||||||| |||| |||||||||||||||    
T  7267482 agttaactgccaaggaaaatctcggtagttaactgccgaggaaatctgattatgcagaca 7267423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 25184927 - 25184829
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| |  |||| ||||||||||  |||| |||| | ||| |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  25184927 agtaaaatacgtttttgccccctcagcagttaactgtcgaggaatt-tgaaaccggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 25184829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 82359 - 82242
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| ||||||  |||||||| ||||||||  ||||||||| | ||| |||||| |||||||||  || ||||| ||| |||||||||||| |||    
T  82359 agtaaaatacgtttttgtttcctcggtagttaactgtcgagtaatt-tgaaaccggctgcagttaactgtcgaggaaaacctccgtagttaactgctgag 82261  T
Q  206 aaaactgattatgcagaca 224  Q
     |||   ||||||||||||    
T  82260 gaaaacaattatgcagaca 82242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 5351777 - 5351711
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||| |||||||||||| || ||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  5351777 cggcggtagttaactgccgaggaaaacctcggtagttaactgccgaggaaatttgattatgcagaca 5351711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 24512119 - 24512241
Alignment:
Q  83 atttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaa 182  Q
    |||||||| | | |||| ||| |||||||||| ||||||||  ||||| |||||||||   ||| ||||  |||| | |||| |||||| ||| ||| ||    
T  24512119 atttcatatggctgagaaacacaagtaaaatacgtttttaccccctcgacagttaactgttgaggaattaaaaaaccagctgcagttaattgccgaaaaa 24512218  T
Q  183 aatctcggtagttaactgccgag 205  Q
    || ||||||||||||||||||||    
T  24512219 aacctcggtagttaactgccgag 24512241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 32956388 - 32956342
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||    
T  32956388 cggctgtagttaactgccgaggaaaatctcggtagtcaactgccgag 32956342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 12905544 - 12905593
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgc 175  Q
    ||||||||||||||| ||||| ||||| ||||||||||| ||||||||||    
T  12905544 cctcggcagttaactgccgagaaattgaaaaatcggctgcagttaactgc 12905593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 24754092 - 24754003
Alignment:
Q  136 taactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag-aaaactgattatgcagaca 224  Q
    ||||| ||||| ||||  ||| ||||||| |||||||| | || ||||| ||||||| | |||||||||| |||||||||||||||||||    
T  24754092 taactgccgaggaatttgaaattcggctgcagttaactaccgaggaaaacctcggtaataaactgccgaggaaaactgattatgcagaca 24754003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 1101150 - 1101071
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaat 185  Q
    ||||||||||| |||| || ||||||||||||||| ||||  ||||  |||  ||||||||||||||||| || ||||||    
T  1101150 agtaaaatatgattttgctccctcggcagttaactgccgatgaatttgaaatccggctgtagttaactgccgaggaaaat 1101071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 12908505 - 12908426
Alignment:
Q  128 tcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    |||||||||||||  |||| ||||  ||||| ||||| |||||||||| || ||||| || | |||||||||||||||||    
T  12908505 tcggcagttaactgtcgagaaattcaaaaattggctgcagttaactgccgaggaaaaccttgatagttaactgccgagaa 12908426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 27276472 - 27276373
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | ||||||  ||||||||||||||| | ||| ||||  |||  |||||| |||||||||| || ||||| ||||| |||||| |||||||    
T  27276472 agtaaaatacgattttaccccctcggcagttaactgctgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcgggagttaattgccgag 27276373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 34639392 - 34639309
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaa 209  Q
    ||||||||| ||||| ||||| ||||  |||  |||||| |||||||||| || |||||  |||| ||||||||||||||||||    
T  34639392 cctcggcaggtaactgccgagaaattaaaaatccggctgcagttaactgctgaggaaaacatcgggagttaactgccgagaaaa 34639309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 17424160 - 17424206
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  17424160 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 17424206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 24601695 - 24601733
Alignment:
Q  187 tcggtagttaactgccgag-aaaactgattatgcagaca 224  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  24601695 tcggtagttaactgccgaggaaaactgattatgcagaca 24601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 24612419 - 24612381
Alignment:
Q  187 tcggtagttaactgccgag-aaaactgattatgcagaca 224  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  24612419 tcggtagttaactgccgaggaaaactgattatgcagaca 24612381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 31974296 - 31974246
Alignment:
Q  155 aaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||| |||||||| | || ||||||||||| ||||||||||||||    
T  31974296 aaatcggctgcagttaactaccgaggaaaatctcggcagttaactgccgag 31974246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 43982227 - 43982273
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  43982227 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 43982273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 45137531 - 45137433
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    ||||||||| | |||| | |||| ||||||||| | ||||| ||||  ||| ||||||| |||||||||| || |||||  ||| ||||||||||||||    
T  45137531 agtaaaatacgattttgcctccttggcagttaattgccgaggaattaaaaattcggctgcagttaactgccgatgaaaacttcgatagttaactgccga 45137433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 2648149 - 2648190
Alignment:
Q  163 tgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    ||||||||||||| || |||||||||||||||||| ||||||    
T  2648149 tgtagttaactgccgaggaaaatctcggtagttaattgccga 2648190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 45479932 - 45479827
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||||||||| |  ||| |||  ||||||||| | |||| ||  |||||||||||||| ||||| ||||  ||||||| ||||    
T  45479932 aaaattgttgttgacacatttcataaggctcagaaacatgagtaaaatacgattttgctctctcggcagttaactgccgagaaattaaaaaatcgactgt 45479833  T
Q  166 agttaa 171  Q
    ||||||    
T  45479832 agttaa 45479827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 12905584 - 12905616
Alignment:
Q  192 agttaactgccgagaaaactgattatgcagaca 224  Q
    ||||||||||||||||||||| |||||||||||    
T  12905584 agttaactgccgagaaaactggttatgcagaca 12905616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 28342520 - 28342616
Alignment:
Q  128 tcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaactgattatgcagaca 224  Q
    |||||||||||||  |||  ||||  |||| |||||| | |||||||| || |||| ||| ||||||||||||||||| |||   ||||||||||||    
T  28342520 tcggcagttaactgtcgaagaattcaaaaaccggctgcaattaactgccgaggaaattcttggtagttaactgccgaggaaaacaattatgcagaca 28342616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 33222610 - 33222690
Alignment:
Q  125 tcctcggcagttaactaccgagtaattgtaaa--atcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||||||||||||||  |||| ||||  | |||||| |||||||||| || |||||  |||| ||||||||||||||    
T  33222610 tcctcggcagttaactaccga--aattttaaagaaccggctgcagttaactgccgaggaaaacttcggcagttaactgccgag 33222690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 806 - 905
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | ||||||  ||||||||||||||| || || ||||  ||| |||||||||||||||||| || ||||| ||||||||||||||||||||    
T  806 agtaaaatacgattttaccccctcggcagttaactgcctaggaatttgaaattcggctgtagttaactgccgaggaaaacctcggtagttaactgccgag 905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 890 - 931
Alignment:
Q  164 gtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||||| || ||||| ||||||||||||||||||||    
T  890 gtagttaactgccgaggaaaacctcggtagttaactgccgag 931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 41855306 - 41855445
Alignment:
Q  70 attgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagt 168  Q
    ||||||||| ||| |||||||| | | |||| |||  ||||||||| |||||| | ||||||||||||||||  |||  ||||  ||||||||||| |||    
T  41855306 attgttgttgacacatttcatatggctgagaaacatgagtaaaatacgtttttgcctcctcggcagttaactgtcgaagaattcaaaaatcggctgcagt 41855405  T
Q  169 taactgcagaagaaaatctcggtagttaactgccgagaaa 208  Q
    ||||||| || ||||| |||||||||||||| ||||||||    
T  41855406 taactgccgaggaaaacctcggtagttaactaccgagaaa 41855445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 18441577 - 18441440
Alignment:
Q  69 aattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtag 167  Q
    |||||||||| ||| |||||||||| | |||||||| |||||||||| |||||| |  ||||||||||||||| ||||| ||||  | || ||  |||||    
T  18441577 aattgttgttgacacatttcataaggctgagacacacaagtaaaatacgtttttgccccctcggcagttaactgccgagaaattcaataaccgattgtag 18441478  T
Q  168 ttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||| ||  |||| ||||| ||||||||||||||    
T  18441477 ttaactgccgagaaaaacctcggcagttaactgccgag 18441440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 18205736 - 18205862
Alignment:
Q  81 atatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaag 180  Q
    |||||| ||||| | |||| |||  ||||||||| ||||||||  ||||||| ||||||| ||||  ||||  |||| |||||| ||||||||||  | |    
T  18205736 atattttataaggctgagaaacacgagtaaaatacgtttttaccacctcggcggttaactgccgaagaattcaaaaaccggctgcagttaactgccaagg 18205835  T
Q  181 aaaatctcggtagttaactgccgagaa 207  Q
    |||| ||||||||||||||||||||||    
T  18205836 aaaacctcggtagttaactgccgagaa 18205862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 1114718 - 1114817
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | ||||||  ||||||||||||||| ||||| ||||  |||  |||||| |||||||||| || ||||  ||||||||||||||||||||    
T  1114718 agtaaaatacgattttaccccctcggcagttaactgccgagaaatttgaaatccggctgcagttaactgccgaggaaatcctcggtagttaactgccgag 1114817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 42605325 - 42605234
Alignment:
Q  113 tatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||||||||||  |||||||||||||||  |||  ||||  ||||||||||| |||||||||| || |||||  ||||||||||||||||||    
T  42605325 tatgtttttaccccctcggcagttaactgtcgaagaattcaaaaatcggctgcagttaactgccgatgaaaacatcggtagttaactgccga 42605234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 26451482 - 26451554
Alignment:
Q  133 agttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||| | ||| ||||  ||| |||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26451482 agttaactgctgaggaattagaaattcggctgtagttaactgccgaggaaaacctcggtagttaactgccgag 26451554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 38873008 - 38872932
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgcc 202  Q
    ||||| ||||||||||||||| ||||  |||| |||||| |||||||||| || ||||| ||||||| |||||||||    
T  38873008 cctcgtcagttaactaccgaggaatttaaaaaccggctgcagttaactgccgaggaaaacctcggtaattaactgcc 38872932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 35962303 - 35962398
Alignment:
Q  127 ctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcag 221  Q
    ||||||||||||||  |||| ||||  |||  |||||  |||||||||| || ||||| ||||| ||||||||||||| |||||||||||||||||    
T  35962303 ctcggcagttaactgtcgaggaatttgaaatccggctacagttaactgccgaggaaaacctcgggagttaactgccgaggaaaactgattatgcag 35962398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 42602457 - 42602534
Alignment:
Q  128 tcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||||| ||||  ||||  |||| ||| || |||||||||| || ||||| ||||||||||||||||||||    
T  42602457 tcggcagttaactgccgaagaattcaaaaaccggatgcagttaactgccgaggaaaacctcggtagttaactgccgag 42602534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 22577633 - 22577741
Alignment:
Q  99 acacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaac 198  Q
    ||||| || ||||||| ||||||  | ||||||||||||| | | ||| ||||  ||||| || || |||||||||  || ||||| |||||||||||||    
T  22577633 acacacaaataaaatacgtttttgttccctcggcagttaattgctgaggaattcaaaaattggttgcagttaactgtcgaggaaaacctcggtagttaac 22577732  T
Q  199 tgccgagaa 207  Q
    |||||||||    
T  22577733 tgccgagaa 22577741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 8419439 - 8419498
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||||||| || ||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  8419439 agttaactgccgaggaaaacctcggtagttaactgccgaggaaatttgattatgcagaca 8419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 32375686 - 32375745
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||||||| || ||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  32375686 agttaactgccgaggaaaacctcggtagttaactgccgaggaaatttgattatgcagaca 32375745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 34366939 - 34367002
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcag 221  Q
    |||||| |||||||| | || ||||| ||||||||||||||||||| |||| ||||||||||||    
T  34366939 cggctgcagttaacttccgaggaaaacctcggtagttaactgccgatgaaatctgattatgcag 34367002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 22550910 - 22550864
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  22550910 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 22550864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 32383255 - 32383205
Alignment:
Q  154 aaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    ||||||||||| |||||||| | || ||||| |||||||||||||||||||    
T  32383255 aaaatcggctgcagttaactaccgaggaaaacctcggtagttaactgccga 32383205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 32437210 - 32437160
Alignment:
Q  154 aaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    ||||||||||| |||||||| | || ||||| |||||||||||||||||||    
T  32437210 aaaatcggctgcagttaactaccgaggaaaacctcggtagttaactgccga 32437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 21406262 - 21406347
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaact 211  Q
    |||| |||||||||| ||||| ||||   ||| |||||| |||||||| | || |||||  ||||||||||||||||||| |||||    
T  21406262 cctctgcagttaactgccgaggaattcataaaccggctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaact 21406347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 21800754 - 21800839
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaact 211  Q
    |||| |||||||||| ||||| ||||   ||| |||||| |||||||| | || |||||  ||||||||||||||||||| |||||    
T  21800754 cctctgcagttaactgccgaggaattcataaaccggctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaact 21800839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 38330516 - 38330589
Alignment:
Q  131 gcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||||||||||||||| || | ||||| |||||| |||||||| | || ||||| ||||| |||||||| ||||    
T  38330516 gcagttaactaccgaggaagtctaaaaccggctgcagttaactactgaggaaaacctcggcagttaactaccga 38330589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 41274627 - 41274668
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    |||||| ||| || ||||||||||||||||||||||||||||    
T  41274627 agttaattgccgaggaaaatctcggtagttaactgccgagaa 41274668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 23958885 - 23958984
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag-aaaactgattatgcagaca 224  Q
    ||||||||||||||| ||||| ||||  |||| |||||| |||||| ||| || ||||| |||||||||||||||||||| ||||||| |||||||||||    
T  23958885 cctcggcagttaactgccgagaaattccaaaaccggctgcagttaaatgccgaggaaaacctcggtagttaactgccgagaaaaactggttatgcagaca 23958984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 13382664 - 13382723
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    |||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  13382664 agttaactgccgaggaaaacctcggtagttaactgccgaggaaaactgattatgcagaca 13382723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 13388786 - 13388707
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||| ||||| ||||  ||| ||||||| |||||||||  || ||||| ||||||||||||||||||||    
T  13388786 cctcggtagttaactgccgagaaatttcaaattcggctgcagttaactgtcgaggaaaacctcggtagttaactgccgag 13388707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 13401481 - 13401560
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||||||| ||||| ||||  ||||||||||| ||||||||||  | |||||| | ||||||||||| |||||    
T  13401481 cctcggcagttaactgccgaggaattaaaaaatcggctgcagttaactgctaaggaaaatattggtagttaactaccgag 13401560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 18351681 - 18351622
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccg-agaaaactgattatgcagaca 224  Q
    |||||||||| || ||||| |||||||||||||||||| ||||| |||||||||||||||    
T  18351681 agttaactgccgaggaaaacctcggtagttaactgccgaagaaatctgattatgcagaca 18351622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 31768748 - 31768827
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||||||| ||||| ||||  |||  |||||| |||||| ||| || ||||| ||||||||||||||||||||    
T  31768748 cctcggcagttaactgccgaggaattaaaaatccggctgcagttaattgccgaggaaaacctcggtagttaactgccgag 31768827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 16192747 - 16192845
Alignment:
Q  109 aaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaa 207  Q
    |||||| |||||| |  |||||||||||||||  |||||||||  ||||||||||| |||||| ||  || ||||  ||||| ||||||||||||||||    
T  16192747 aaaatacgtttttgccccctcggcagttaactgtcgagtaatttaaaaatcggctgcagttaagtgtcgaggaaagcctcggcagttaactgccgagaa 16192845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 11840296 - 11840232
Alignment:
Q  158 tcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcag 221  Q
    ||||||| |||||||||  || ||||| ||||||||||||||||||| |||| ||||||||||||    
T  11840296 tcggctgcagttaactgtcgaggaaaacctcggtagttaactgccgaggaaatctgattatgcag 11840232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 26712218 - 26712179
Alignment:
Q  170 aactgcagaagaaaatctcggtagttaactgccgagaaaa 209  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  26712218 aactgccgaagaaaacctcggtagttaactgccgagaaaa 26712179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 27616750 - 27616789
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  27616750 agttaactgccgaagaaaacctcggtagttaactgccgag 27616789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 2051004 - 2051121
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| || | ||||||||||||| ||||  |||| | ||| ||| || |||||||||| || ||||| ||||||||||| |||| |||    
T  2051004 agtaaaatacgtttttgctccttcggcagttaactgccgatgaatt-tgaaaccggttgcagttaactgccgaggaaaacctcggtagttatctgcagag 2051102  T
Q  206 aaaactgattatgcagaca 224  Q
     |||   ||||||||||||    
T  2051103 gaaaacaattatgcagaca 2051121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 6204855 - 6204901
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  6204855 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 6204901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 11691822 - 11691868
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  11691822 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 11691868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 18606020 - 18606121
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| |||||| |  |||||| |||||||| || || |||| | | | |||||| |||||||||| || ||||| ||||||| ||||||||||||    
T  18606020 agtaaaatacgtttttgccccctcggtagttaactgcctaggaatt-tgacaccggctgcagttaactgccgaggaaaacctcggtacttaactgccgag 18606118  T
Q  206 aaa 208  Q
    |||    
T  18606119 aaa 18606121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 22305136 - 22305182
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  22305136 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 22305182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 26712072 - 26712122
Alignment:
Q  155 aaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||| | |||||||||| || ||||| ||||||||||||||||||||    
T  26712072 aaatcggcggcagttaactgccgaggaaaacctcggtagttaactgccgag 26712122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 29076368 - 29076322
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  29076368 cggctgcagttaactgctgaggaaaacctcggtagttaactgccgag 29076322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 29109901 - 29109855
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  29109901 cggctgcagttaactgctgaggaaaacctcggtagttaactgccgag 29109855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 29111341 - 29111295
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  29111341 cggctgcagttaactgctgaggaaaacctcggtagttaactgccgag 29111295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 31771786 - 31771740
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || |||||||||||||||||| |||||||    
T  31771786 cggctgcagttaactgccgaggaaaatctcggtagttaattgccgag 31771740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 23986099 - 23986010
Alignment:
Q  86 tcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgc 175  Q
    ||||||| | |||||||| |||||||||| |||||| |  ||| ||||||||||| ||||| ||||  |||| ||| || ||||||||||    
T  23986099 tcataaggctgagacacacaagtaaaatacgtttttgcccccttggcagttaactgccgagaaattcaaaaaccggttgcagttaactgc 23986010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 32643600 - 32643523
Alignment:
Q  125 tcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgcc 202  Q
    |||||||||||||||| || || ||||  |||  |||||| |||||||||  || ||||| |||||||||||||||||    
T  32643600 tcctcggcagttaactgccaaggaattaaaaatccggctgcagttaactgtcgaggaaaacctcggtagttaactgcc 32643523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 15995717 - 15995816
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||||||||||| | ||||| ||||  |||  |||||| |||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  15995717 cctcggcagttaaatgccgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaaaactgattatgcagaca 15995816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 19069182 - 19069281
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||||||||||| | ||||| ||||  |||  |||||| |||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  19069182 cctcggcagttaaatgccgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaaaactgattatgcagaca 19069281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 9889969 - 9890068
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | ||||||  ||||||||||||||| ||||| ||||  |||  |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  9889969 agtaaaatacgattttaccccctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 9890068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 21472622 - 21472503
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||||||||| | |||| |||  ||||||||| |||||| |  ||||||||||||||| ||||| ||||  |||||||||||     
T  21472622 aaaattgttgttgacacatttcataaggctgagaaacacgagtaaaatacgtttttgccgcctcggcagttaactgccgaggaattcaaaaatcggctgc 21472523  T
Q  166 agttaactgcagaagaaaat 185  Q
    |||||||||| || ||||||    
T  21472522 agttaactgccgaggaaaat 21472503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 955761 - 955865
Alignment:
Q  100 cacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaact 199  Q
    |||| |||||||||| |||||| | || | ||||||||||| | ||| ||||  ||||||||||| |||||||||| ||  |||| ||||||||||||||    
T  955761 cacacaagtaaaatacgtttttgcctctttggcagttaactgctgaggaattcaaaaatcggctgcagttaactgccgagaaaaacctcggtagttaact 955860  T
Q  200 gccga 204  Q
    |||||    
T  955861 gccga 955865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 44561468 - 44561329
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||||||||| | |||| |||  ||||||||| | |||| |   |||||  ||||||| |||||||| |  |||| ||||||     
T  44561468 aaaattgttgttgacacatttcataaggctgagaaacacgagtaaaatacgattttgccctctcggttgttaactgccgagtaaataaaaaaccggctgc 44561369  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||| | || ||||||||||||||||||||||||||    
T  44561368 agttaactaccgaggaaaatctcggtagttaactgccgag 44561329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 29700440 - 29700302
Alignment:
Q  67 aaaattgttgtt-acatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgt 165  Q
    |||||||||||| ||| |||||||||| | ||| |||| |||||||||| | ||||   |||||| ||||||||| | ||| ||||  | || ||||||     
T  29700440 aaaattgttgttgacacatttcataaggctgaggcacacaagtaaaatacgcttttgtctcctcgacagttaactgctgaggaattcaataaccggctgc 29700341  T
Q  166 agttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||||||||| || ||||| |||||||||||| ||||||    
T  29700340 agttaactgccgaggaaaacctcggtagttaattgccga 29700302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 41023363 - 41023460
Alignment:
Q  108 taaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||| | |||||| |||| ||||||||||| ||||| ||||  |||  |||||| |||||||||| || ||||  ||||||||||||||||||||    
T  41023363 taaaatacgattttacctccttggcagttaactgccgagaaatttgaaatccggctgcagttaactgctgaggaaatcctcggtagttaactgccgag 41023460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 15999877 - 15999798
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||||||| ||||| ||||  |||  |||||| | |||||||| || ||||| ||||||||||||||||||||    
T  15999877 cctcggcagttaactgccgagaaatttgaaatccggctgcaattaactgccgaggaaaacctcggtagttaactgccgag 15999798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 34151616 - 34151687
Alignment:
Q  133 agttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||||| | ||||||||||  ||||||||||| |||||||||| || ||||| ||||||||| |||||||||    
T  34151616 agttaaatgccgagtaattcaaaaatcggctgcagttaactgccgaggaaaacctcggtagtaaactgccga 34151687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 55407838 - 55407792
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||    
T  55407838 cggctgcagttaactgccgaggaaaatctcggtagttaactgccgag 55407792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 1041932 - 1042009
Alignment:
Q  128 tcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||||||| ||||| ||||  |||  || ||| |||||||||| ||  |||||||||||||||||||||||||    
T  1041932 tcggcagttaactgccgaggaattagaaatccgactgcagttaactgccgagaaaaatctcggtagttaactgccgag 1042009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 17342142 - 17342222
Alignment:
Q  131 gcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaact 211  Q
    |||||||||| ||||| ||||   |||||||||| |||||||| | ||  ||||  |||||||||||||||||||||||||    
T  17342142 gcagttaactgccgaggaattcataaatcggctgcagttaactaccgagaaaaacttcggtagttaactgccgagaaaact 17342222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 21470872 - 21470980
Alignment:
Q  100 cacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaact 199  Q
    |||| |||||||||| ||||||   | ||||||||||||||  ||||  |||  ||||  | ||| ||||||| ||||| ||||| ||||||||||||||    
T  21470872 cacacaagtaaaatacgtttttgtcttctcggcagttaactgtcgaggtattcaaaaactgactgcagttaaccgcagaggaaaacctcggtagttaact 21470971  T
Q  200 gccgagaaa 208  Q
    |||||||||    
T  21470972 gccgagaaa 21470980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 40354640 - 40354688
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgag-aaaactga 213  Q
    |||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  40354640 agttaactgccgaagaaaacctcggtagttaactgccgagcaaaactga 40354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 21018069 - 21018108
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  21018069 agttaactgccgaagaaaacctcggtagttaactgccgag 21018108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 49563875 - 49563934
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgccgagaaaa-ctgattatgcagaca 224  Q
    |||||||||| || ||||| ||||||||||||| ||||||||||  ||||||||||||||    
T  49563875 agttaactgccgaggaaaacctcggtagttaacggccgagaaaatttgattatgcagaca 49563934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 51492099 - 51492162
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcag 221  Q
    |||||| ||||||||||  | ||||| ||||||||||||||||||| |||| ||||||||||||    
T  51492099 cggctgcagttaactgcctaggaaaacctcggtagttaactgccgaggaaatctgattatgcag 51492162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 6178155 - 6178109
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  6178155 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 6178109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 11494566 - 11494616
Alignment:
Q  154 aaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga 204  Q
    |||| |||||| |||||||||| || ||||| |||||||||||||||||||    
T  11494566 aaaaccggctgcagttaactgccgaggaaaacctcggtagttaactgccga 11494616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 21022933 - 21022887
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  21022933 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 21022887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 26932612 - 26932658
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||| |||||||||||| || ||||| ||||||||||||||||||||    
T  26932612 cggcggtagttaactgccgaggaaaacctcggtagttaactgccgag 26932658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 49094112 - 49094158
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  49094112 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgag 49094158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 4980005 - 4979916
Alignment:
Q  116 gtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| || |||||||||||||||  |||  | ||  |||| |||||| |||||||||| || |||| | |||||||||||||||||||    
T  4980005 gtttttcctccctcggcagttaactgtcgacgatttcaaaaaccggctgcagttaactgctgaggaaattatcggtagttaactgccgag 4979916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 3449718 - 3449750
Alignment:
Q  192 agttaactgccgagaaaactgattatgcagaca 224  Q
    ||||||||||| |||||||||||||||||||||    
T  3449718 agttaactgccaagaaaactgattatgcagaca 3449750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 9473710 - 9473654
Alignment:
Q  155 aaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaact 211  Q
    |||||||||| |||||||| | || |||||| |||||||||||||||| || |||||    
T  9473710 aaatcggctgcagttaactaccgaggaaaatttcggtagttaactgccaaggaaact 9473654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 26792282 - 26792246
Alignment:
Q  166 agttaactgcagaagaaaatctcggtagttaactgcc 202  Q
    |||||||||| || |||||||||||||||||||||||    
T  26792282 agttaactgccgaggaaaatctcggtagttaactgcc 26792246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 8193 - 8293
Alignment:
Q  125 tcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagac 223  Q
    |||||||||||||||| || || ||||  |||  ||| || |||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||    
T  8193 tcctcggcagttaactgccaaggaatttgaaatccggatgcagttaactgctgaagaaaacctcggtagttaactgccaaggaaaactgattatgcagac 8292  T
Q  224 a 224  Q
    |    
T  8293 a 8293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 16033 - 15934
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccga-gaaaactgattatgcagaca 224  Q
    ||||||||||||||| ||||| ||||  |||  | |||| |||||||||| || ||||| |||||||||||||| |||| ||||||||||||||||||||    
T  16033 cctcggcagttaactgccgaggaatttgaaatccagctgcagttaactgccgaggaaaacctcggtagttaacttccgaggaaaactgattatgcagaca 15934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 17449 - 17350
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | ||||||  ||||||||||||||| ||||| ||||  |||  |||||| |||||||||| || ||||  ||||||||||||||||||||    
T  17449 agtaaaatacgattttaccccctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaaatcctcggtagttaactgccgag 17350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 20185 - 20091
Alignment:
Q  131 gcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag-aaaactgattatgcagaca 224  Q
    |||||||||| ||||| ||||  ||||||||||  |||||||||  || ||||  |||||||||| ||||||||| |||||||||||||||||||    
T  20185 gcagttaactgccgaggaattcaaaaatcggctacagttaactgtcgaggaaatcctcggtagtttactgccgaggaaaactgattatgcagaca 20091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 3880 - 3951
Alignment:
Q  126 cctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaa 197  Q
    |||||||||||||||  |||| ||||  ||||||||||| |||||||||| || ||||| ||||||||||||    
T  3880 cctcggcagttaactgtcgaggaattcaaaaatcggctgcagttaactgccgaggaaaacctcggtagttaa 3951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 4498 - 4399
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    ||||||||| | ||||||| ||||||||||||||| ||||| ||||  ||   |||||| |||||| | | || ||||  ||||||||||||||||||||    
T  4498 agtaaaatacgattttactccctcggcagttaactgccgaggaatttgaactccggctgcagttaaataccgaggaaatcctcggtagttaactgccgag 4399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 12433 - 12387
Alignment:
Q  159 cggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  12433 cggctgcagttaactgccgatgaaaacctcggtagttaactgccgag 12387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 7402 - 7301
Alignment:
Q  106 agtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||||||||| | |||| | ||||||| | | ||| ||||  |||| |||||| | | |||||| ||  |||| ||||||||||||||||||||    
T  7402 agtaaaatatgtttttgcctccttgacagttaattgctgaggaattcaaaaaccggctgcaatcaactgccgagaaaaacctcggtagttaactgccgag 7303  T
Q  206 aa 207  Q
    ||    
T  7302 aa 7301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 127526 - 127575
Alignment:
Q  156 aatcggctgtagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||| |||||||||||||||| |||||  |||| ||||||||||||||    
T  127526 aatcggttgtagttaactgcagaggaaaacttcggcagttaactgccgag 127575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 232878 - 232825
Alignment:
Q  158 tcggctgtagttaactgcagaagaaaatctcggtagttaactgccgagaaaact 211  Q
    ||||||| | |||||||| || ||||| |||||||||||||||||||| |||||    
T  232878 tcggctgcaattaactgccgaggaaaacctcggtagttaactgccgaggaaact 232825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 561 - 433
Alignment:
Q  77 ttacatatttcataagaccgagacacagaagtaaaatatgtttttacttcctcggcagttaactaccgagtaattgtaaaatcggctgtagttaactgca 176  Q
    ||||| |||| ||||||| |||| |||  ||||||||| | |||| || ||||||||||||||| ||||  ||||   ||  |||||| |||||||||      
T  561 ttacacatttgataagactgagaaacacgagtaaaatacgattttgctccctcggcagttaactgccgaagaattaataatccggctgcagttaactgtc 462  T
Q  177 gaagaaaatctcggtagttaactgccgag 205  Q
    || ||||| ||||| |||||||| |||||    
T  461 gaggaaaacctcgggagttaactaccgag 433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 18320 - 18288
Alignment:
Q  177 gaagaaaatctcggtagttaactgccgagaaaa 209  Q
    |||||||| ||||||||||||||||||||||||    
T  18320 gaagaaaacctcggtagttaactgccgagaaaa 18288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 499 - 531
Alignment:
Q  192 agttaactgccgagaaaactgattatgcagaca 224  Q
    ||||||||||| |||||||||||||||||||||    
T  499 agttaactgccaagaaaactgattatgcagaca 531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 54524 - 54556
Alignment:
Q  177 gaagaaaatctcggtagttaactgccgagaaaa 209  Q
    |||||||| ||||||||||||||||||||||||    
T  54524 gaagaaaacctcggtagttaactgccgagaaaa 54556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 236273 - 236233
Alignment:
Q  165 tagttaactgcagaagaaaatctcggtagttaactgccgag 205  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  236273 tagttaactgcagaggaaaacttcggtagttaactgccgag 236233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University