View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_8 (Length: 529)
Name: NF1484_high_8
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 5678518 - 5678002
Alignment:
| Q |
1 |
tctgctagtgacttgtctgtgaagaagcaagagcttctatctagtgccatgaaaagaacaagtgactggtatannnnnnn--atgtttatgtatatatat |
98 |
Q |
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| T |
5678518 |
tctgctagtgacttgtctgtgaagaagcaagagcttctatctagtgccatgaaaagaacaagtgactggtatatttttttttatgtttatgtatatatat |
5678419 |
T |
|
| Q |
99 |
gtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaatgagttgtattgcttaattatagg |
198 |
Q |
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| T |
5678418 |
gtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaatgagttgtattgcttaattatagg |
5678319 |
T |
|
| Q |
199 |
attttttctcaggagattccaagtgatgtcaatgtccaaattggagaatcttcctttactttacataaggtagtggctctttgctgcatagatataatat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5678318 |
attttttctcaggagattccaagtgatgtcaatgtccaaattggtgaatcttcctttactttacataaggtagtgactctttgctgcatagatataatat |
5678219 |
T |
|
| Q |
299 |
atatcaaacttatttgctttgaatcattcaagtgaagagtaatgatttcttaatcttgtaagatgtcacttgtcaatcaattgttaatgtttatttgtta |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678218 |
atatcaaacttatttgctttgaatcattcaagtgaagagtaatgatttcttaatcttgtaagatgtcacttgtcaatcaattgttaatgtttatttgtta |
5678119 |
T |
|
| Q |
399 |
caaaacatgtcatgnnnnnnnctttctgtctcaatatataacttgaatttgaaagcaagatgttacatatgtttttatgactgattaaaagtgcaaaaaa |
498 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678118 |
caaaacatgtcatgtttttttctttctgtctcaatatataacttgaatttgaaagcaagatgttacatatgtttttatgactgattaaaagtgcaaaaaa |
5678019 |
T |
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| Q |
499 |
gctttatatgacagtgt |
515 |
Q |
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|||||||||||||||| |
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| T |
5678018 |
actttatatgacagtgt |
5678002 |
T |
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