View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_high_81 (Length: 205)
Name: NF1484_high_81
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_high_81 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 24309689 - 24309862
Alignment:
| Q |
17 |
gtaacaattcttattatagcataaaaatatcaattattactattannnnnnnnactatgcttattatattatggagattaaacaatagaatggttaaaaa |
116 |
Q |
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| T |
24309689 |
gtaacaattcttattatagcataaaaatatcaattattactattattttttttactatgcttattatattctggagattaaacaatagaatggttaaaaa |
24309788 |
T |
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| Q |
117 |
taatattggggttaagaaaggcaaatttcaaaaattcttcgttattttccaagtcatctaaataattttcagcc |
190 |
Q |
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| T |
24309789 |
taatattggggttaagaaaggcaaatttcaaaaattctttgttattttccaagtcatttaaataattttcagcc |
24309862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 24313788 - 24313672
Alignment:
| Q |
74 |
tgcttattatattatggagattaaacaatagaatggttaaaaataatattggggttaagaaaggcaaatttcaaaaattcttcgttattttccaagtcat |
173 |
Q |
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| T |
24313788 |
tgcttattctgttttggagattaaatatcagaacggttaaaattaatgttgggattatgtaaggcaaatttaagaaattctatattattttccaagccat |
24313689 |
T |
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| Q |
174 |
ctaaataattttcagcc |
190 |
Q |
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| T |
24313688 |
ctaaatgattttcagcc |
24313672 |
T |
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