View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_10 (Length: 515)
Name: NF1484_low_10
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 39264755 - 39264263
Alignment:
| Q |
18 |
gtcataaatctgattattgtctatttgcagttctcactgttggttttcttagaacaatagagaacaaaaaatgtgtcgaggtgtgtagccggagttgagg |
117 |
Q |
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| T |
39264755 |
gtcataaatctgattattgtctatttgcagttctcactgttggttttcttagcacaatatagaacaaaaaatgtgtcgaggtgtgtagccggagttgagg |
39264656 |
T |
|
| Q |
118 |
gaaagaagaagggttcaacattcaccatcatggacattgttctctgtttataagtttctttaagagaggattaaggttggtaaggcttctggtatcgtta |
217 |
Q |
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| T |
39264655 |
gaaagaagaagggttcaacattcaccatcatgggcattgttctctgtttataagtttctttaagagaggattaaggttggtaaggcttctggtatcgtta |
39264556 |
T |
|
| Q |
218 |
ccctgtgacatatccaagatcttggttgcctttgacagtaacaattacatgatatatttgaaatatttgacagtatagttaatgaaacacaatgtnnnnn |
317 |
Q |
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| T |
39264555 |
ccctgtgacatatccaagatcttggttgtctttgacagtaacaattacatgatatatttgaaatatttgacagtatagttaatgaaacacaatgtaaaaa |
39264456 |
T |
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| Q |
318 |
nngatagaagtatctttgagttgaggtacgtaacattgtcgagaat------gagggagaggaagaggaataagagtaattctatgatcaacataatgta |
411 |
Q |
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| T |
39264455 |
aagatagaagtatctttgagttgaggtacgtaacattgtcaagaatgagggagagggagagggagaggaataagagtaattctatgatcaacataatgta |
39264356 |
T |
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| Q |
412 |
acaatttcaaagttttattttgtaaaaatttatttgtattcttaccctaaaacaaatcttaaggtcttattttcactcatatttatagttcat |
504 |
Q |
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| T |
39264355 |
acaatttcaaagttttattttgtaaaaatttatttgtattcttaccctaaaacaaatcttaaggtcttattttcactcatatttatagttcat |
39264263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 264 - 504
Target Start/End: Complemental strand, 11628262 - 11628029
Alignment:
| Q |
264 |
acatgatatatttgaaatatttgacagtatagttaatgaaacacaatgtnnnnnnngatagaagtatctttgagttgaggtacgtaacattgtcgagaat |
363 |
Q |
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| T |
11628262 |
acatgatatatttaaaatatttgacaaagtacttgaagaaacacaatgtaaacaaagatagaagtatctttgagctgaggtatttaacattgtcgagaat |
11628163 |
T |
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| Q |
364 |
gagggagaggaagaggaataagagtaattctatgatcaacataatgtaacaatttcaaagttttattttgtaaaaatttatttgtattcttaccctaaaa |
463 |
Q |
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| T |
11628162 |
gagggagaggaa------taagagtaattctatgatcaacata-tgtataaatttcaaagttttattttgtacaaatttgtttgtattcttacccaaaat |
11628070 |
T |
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| Q |
464 |
caaatcttaaggtcttattttcactcatatttatagttcat |
504 |
Q |
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| T |
11628069 |
caaatcttaaggtcttattttcactcatttttatagttcat |
11628029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 5566478 - 5566566
Alignment:
| Q |
71 |
acaatagagaacaaaaaatgtgtcgaggtg-tgtagccggagttgagggaaagaagaagggttcaacattcaccatcatggacattgtt |
158 |
Q |
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|||| |||||| |||||||| ||||||||| ||||||| ||| | || |||||||||| ||| ||||| |||||||||||||||||||| |
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| T |
5566478 |
acaaaagagaagaaaaaatgggtcgaggtggtgtagcccgagataagtgaaagaagaaaggtgcaacaatcaccatcatggacattgtt |
5566566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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