View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_11 (Length: 502)
Name: NF1484_low_11
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 221 - 493
Target Start/End: Complemental strand, 38482779 - 38482507
Alignment:
| Q |
221 |
atcagcccatataatacttctacgagtcaaggcatgacaaagtttattgaaaagaaaatagagttttcaattttatcattttcaatcacttctaattcgc |
320 |
Q |
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| T |
38482779 |
atcagcccatataatacttctatgagtcaaggcatgacaaagtttattgaaaagaaaataaagttttcaattttatcattttcaatcacttctaattcgc |
38482680 |
T |
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| Q |
321 |
ccatgcagtctttctaggagccaagatatggaaaagtttattgaatagataatcatataatttagaggtgacaa--atatcatacatagtaattatataa |
418 |
Q |
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| T |
38482679 |
ccatgcaatctttctaggagccaagatatggaaaagtttattgaatagataatcatataatttagaggtgacaaatatatcatacatagtaattatataa |
38482580 |
T |
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| Q |
419 |
agaattttacacatatacattgtgaaacaattataatcattagatcaacataaaccacaagtgaaaaatgatgat |
493 |
Q |
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| T |
38482579 |
agaattttacacatat--attgtgaaacaattataatcattagatcaacataaaccacaagtgaaaaatggtgat |
38482507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 38482991 - 38482845
Alignment:
| Q |
9 |
gggtagattatactaataaaagaagtcatgatttctaaatgtaaatgactttctctaccaacaaaatgttcttctctaagtatatatatacagagaaaac |
108 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38482991 |
gggtagaatttactaataaaagaagtcatgatttctaaatgtaaatgactttctctaccaacaaaatgttcttctctaagtatatatatacagacaaaac |
38482892 |
T |
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| Q |
109 |
aacataggtaggaatgacaaaactaattgcatttttaaaataaccta |
155 |
Q |
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| T |
38482891 |
aacataggtagagatgacaaaactaattgcatttttaaaataaccta |
38482845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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