View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_12 (Length: 500)
Name: NF1484_low_12
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Original strand, 11592422 - 11592897
Alignment:
| Q |
17 |
acaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataaccctagacaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592422 |
acaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataaccctagacaa |
11592521 |
T |
|
| Q |
117 |
aacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactctctccatt |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11592522 |
aacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactctctccatt |
11592621 |
T |
|
| Q |
217 |
gataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttccctttttctaatg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
11592622 |
gataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgcctttttctaatg |
11592721 |
T |
|
| Q |
317 |
acccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaac |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592722 |
acccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaac |
11592821 |
T |
|
| Q |
417 |
ttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcctttgct |
492 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11592822 |
ttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcctttgct |
11592897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 11645697 - 11645222
Alignment:
| Q |
17 |
acaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataaccctagacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645697 |
acaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataaccctagacaa |
11645598 |
T |
|
| Q |
117 |
aacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactctctccatt |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11645597 |
aacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactctctccatt |
11645498 |
T |
|
| Q |
217 |
gataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttccctttttctaatg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
11645497 |
gataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgcctttttctaatg |
11645398 |
T |
|
| Q |
317 |
acccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645397 |
acccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaac |
11645298 |
T |
|
| Q |
417 |
ttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcctttgct |
492 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
11645297 |
ttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcctttgct |
11645222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 151 - 492
Target Start/End: Complemental strand, 37181056 - 37180716
Alignment:
| Q |
151 |
attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc |
249 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
37181056 |
attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat |
37180957 |
T |
|
| Q |
250 |
gcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttc-cctttttctaatgacccttttgtgtattcttgaacattatcataa |
348 |
Q |
| |
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| ||||||||||| | ||||||||||||| || ||||||||||| | ||| |||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
37180956 |
gtctcggtcacgtt---accaacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataa |
37180860 |
T |
|
| Q |
349 |
acatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaa |
448 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
37180859 |
acatcattagctttatcataaactttctctttaacattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgcataaacaa |
37180760 |
T |
|
| Q |
449 |
tatctctcttcttatcaattgtttctgaagctttatcctttgct |
492 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
37180759 |
tatctctcttcttatcaattgtttatgaggctttatcctttgct |
37180716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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