View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_13 (Length: 457)
Name: NF1484_low_13
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Original strand, 53233426 - 53233861
Alignment:
| Q |
8 |
agatgaagaattggaaccactgcttccgttcatattttgttgctgaacaaatatacccgatccactgaaaaatgctgcattgtggggattatcactgttg |
107 |
Q |
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| T |
53233426 |
agatgaagaattggaaccactgcttccgttcatattttgttgctgaacaaatatacctgatccactgaaaaatgctgcattgtggggattatcactgttg |
53233525 |
T |
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| Q |
108 |
gtatttgaaggtgcatgagcagaaaaatccatgttgaatggtgtggtagtagtagtaacagcactaggattattatggaagccgagaatattggaccaat |
207 |
Q |
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| T |
53233526 |
gtatttgaaggtacatgagcagaaaaatccatgttgaatggtatggtagtggtagtaacagcactaggattattatggaagccgagaatattggaccaat |
53233625 |
T |
|
| Q |
208 |
aatcggtagaagggtcttgtttaataggtaaggcgaagcttaaagttgttgctgacgaagttgaagatggatgatctatttcgtcggattgaattggttc |
307 |
Q |
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| T |
53233626 |
aatcggtagaagggtcttgtttaataggtaaggcgaagcttaaagttgttgctgacgaagttgaagatggatgatctatttcgtcggattgaattggttc |
53233725 |
T |
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| Q |
308 |
attgattttggtttctgaaacacaatctgtggaatttttattgttcttgtttgataaacctcctatgggaagagaactatttgcaatactctttacgtcg |
407 |
Q |
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| T |
53233726 |
attgattttggtttctgatacacaatctgtggaatttttattgttcttgtttgataaacctcctatgggaagagaacaatttgcaatactctttacgtcg |
53233825 |
T |
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| Q |
408 |
taccgactcatgtcaaaatttgttactgcatttagt |
443 |
Q |
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| T |
53233826 |
taccgactcatgtcaaaatttgttactgcatttagt |
53233861 |
T |
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