View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484_low_15 (Length: 447)
Name: NF1484_low_15
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 34626566 - 34626133
Alignment:
| Q |
16 |
taaatgtgataacaaattattattaattacaccttgtgtagtaaagagactcttaaacacaagctagaccaattatatttggattcgatcgaagacagtt |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34626566 |
taaatgtgataacaaattatta---attacaccttgtgtagtaaagagactcttaaacacaagctagaccaattatatttggattcgatcgaagacagtt |
34626470 |
T |
|
| Q |
116 |
tttcaatacaaaattcacggataaacaaaggttgcctatgcatatggaaaaaggcgatgacggtacattcgagcgaaatctatgaaagaaattttaaaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34626469 |
tttcaatacaaaattcacggataaacaaaggttgcctatgcatatggaaaaaggggatgacggtacattcgagagaaatctatgaaagaaattttaaaac |
34626370 |
T |
|
| Q |
216 |
atttgtttaaatgtatggatagattcaatagaataaaattttaattattaagcaccaataaaaggtacctgctttataggattcgactgaccctgtgaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34626369 |
atttgtttaaatgtatggatagattcgatagaataaaattttaattattaagcaccaataaaaggtacctgctttataggattcgactgaccctgtgaaa |
34626270 |
T |
|
| Q |
316 |
gcaaagttg-------------ttgcctttgcgttgcaatgtttgtctaagtctaaccttagtacccttagatttcttggatggtcgaagtgacaaaatt |
402 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
34626269 |
gcaaagttgttgcaatgatttgttgcctttgcgttgcaatgtttgtctaagtctaaccttagtacccttagatttcttggatggtggaattgacaaaatt |
34626170 |
T |
|
| Q |
403 |
gtcatcagaaatggctcgcatggccttcaattctctg |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34626169 |
gtcatcagaaatggctcgcatggccttcaattctctg |
34626133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University